data_4J0T # _model_server_result.job_id GB4B8YD7Ttwnx7iB4pwdTQ _model_server_result.datetime_utc '2024-11-25 03:55:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j0t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4J0T # _exptl.entry_id 4J0T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4J0T _cell.length_a 102.221 _cell.length_b 102.221 _cell.length_c 170.658 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J0T _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 171 A CYS 216 1_555 A SG CYS 375 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? disulf ? disulf2 A SG CYS 233 A CYS 278 1_555 A SG CYS 398 A CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf3 A SG CYS 285 A CYS 330 1_555 A SG CYS 335 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc1 A O VAL 157 A VAL 202 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? metalc ? metalc2 A O LYS 158 A LYS 203 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.056 ? metalc ? metalc3 A O THR 160 A THR 205 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc4 A O HIS 197 A HIS 242 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc5 A O TYR 200 A TYR 245 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc6 B NA NA . A NA 501 1_555 F O HOH . A HOH 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc7 B NA NA . A NA 501 1_555 F O HOH . A HOH 744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.183 ? metalc ? metalc8 C NA NA . A NA 502 1_555 F O HOH . A HOH 767 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 133 n n S C1 DMS sing 134 n n S C2 DMS sing 135 n n C1 H11 DMS sing 136 n n C1 H12 DMS sing 137 n n C1 H13 DMS sing 138 n n C2 H21 DMS sing 139 n n C2 H22 DMS sing 140 n n C2 H23 DMS sing 141 n n # _atom_sites.entry_id 4J0T _atom_sites.fract_transf_matrix[1][1] 0.009783 _atom_sites.fract_transf_matrix[1][2] 0.005648 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011296 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 1 NA NA . C 2 NA A 1 502 1 NA NA . D 3 DMS A 1 503 1 DMS DMS . E 4 6T9 A 1 504 1 6T9 162 . F 5 HOH A 1 601 1 HOH HOH . F 5 HOH A 2 602 2 HOH HOH . F 5 HOH A 3 603 3 HOH HOH . F 5 HOH A 4 604 4 HOH HOH . F 5 HOH A 5 605 5 HOH HOH . F 5 HOH A 6 606 6 HOH HOH . F 5 HOH A 7 607 7 HOH HOH . F 5 HOH A 8 608 8 HOH HOH . F 5 HOH A 9 609 9 HOH HOH . F 5 HOH A 10 610 10 HOH HOH . F 5 HOH A 11 611 11 HOH HOH . F 5 HOH A 12 612 12 HOH HOH . F 5 HOH A 13 613 13 HOH HOH . F 5 HOH A 14 614 14 HOH HOH . F 5 HOH A 15 615 15 HOH HOH . F 5 HOH A 16 616 16 HOH HOH . F 5 HOH A 17 617 17 HOH HOH . F 5 HOH A 18 618 18 HOH HOH . F 5 HOH A 19 619 19 HOH HOH . F 5 HOH A 20 620 21 HOH HOH . F 5 HOH A 21 621 22 HOH HOH . F 5 HOH A 22 622 23 HOH HOH . F 5 HOH A 23 623 24 HOH HOH . F 5 HOH A 24 624 25 HOH HOH . F 5 HOH A 25 625 26 HOH HOH . F 5 HOH A 26 626 27 HOH HOH . F 5 HOH A 27 627 28 HOH HOH . F 5 HOH A 28 628 29 HOH HOH . F 5 HOH A 29 629 30 HOH HOH . F 5 HOH A 30 630 31 HOH HOH . F 5 HOH A 31 631 32 HOH HOH . F 5 HOH A 32 632 33 HOH HOH . F 5 HOH A 33 633 34 HOH HOH . F 5 HOH A 34 634 35 HOH HOH . F 5 HOH A 35 635 36 HOH HOH . F 5 HOH A 36 636 37 HOH HOH . F 5 HOH A 37 637 38 HOH HOH . F 5 HOH A 38 638 40 HOH HOH . F 5 HOH A 39 639 41 HOH HOH . F 5 HOH A 40 640 42 HOH HOH . F 5 HOH A 41 641 43 HOH HOH . F 5 HOH A 42 642 44 HOH HOH . F 5 HOH A 43 643 45 HOH HOH . F 5 HOH A 44 644 46 HOH HOH . F 5 HOH A 45 645 47 HOH HOH . F 5 HOH A 46 646 48 HOH HOH . F 5 HOH A 47 647 49 HOH HOH . F 5 HOH A 48 648 50 HOH HOH . F 5 HOH A 49 649 52 HOH HOH . F 5 HOH A 50 650 53 HOH HOH . F 5 HOH A 51 651 55 HOH HOH . F 5 HOH A 52 652 56 HOH HOH . F 5 HOH A 53 653 57 HOH HOH . F 5 HOH A 54 654 58 HOH HOH . F 5 HOH A 55 655 59 HOH HOH . F 5 HOH A 56 656 60 HOH HOH . F 5 HOH A 57 657 62 HOH HOH . F 5 HOH A 58 658 63 HOH HOH . F 5 HOH A 59 659 64 HOH HOH . F 5 HOH A 60 660 65 HOH HOH . F 5 HOH A 61 661 66 HOH HOH . F 5 HOH A 62 662 68 HOH HOH . F 5 HOH A 63 663 69 HOH HOH . F 5 HOH A 64 664 70 HOH HOH . F 5 HOH A 65 665 71 HOH HOH . F 5 HOH A 66 666 72 HOH HOH . F 5 HOH A 67 667 73 HOH HOH . F 5 HOH A 68 668 74 HOH HOH . F 5 HOH A 69 669 75 HOH HOH . F 5 HOH A 70 670 76 HOH HOH . F 5 HOH A 71 671 77 HOH HOH . F 5 HOH A 72 672 78 HOH HOH . F 5 HOH A 73 673 79 HOH HOH . F 5 HOH A 74 674 80 HOH HOH . F 5 HOH A 75 675 81 HOH HOH . F 5 HOH A 76 676 82 HOH HOH . F 5 HOH A 77 677 83 HOH HOH . F 5 HOH A 78 678 84 HOH HOH . F 5 HOH A 79 679 86 HOH HOH . F 5 HOH A 80 680 87 HOH HOH . F 5 HOH A 81 681 88 HOH HOH . F 5 HOH A 82 682 89 HOH HOH . F 5 HOH A 83 683 90 HOH HOH . F 5 HOH A 84 684 91 HOH HOH . F 5 HOH A 85 685 92 HOH HOH . F 5 HOH A 86 686 93 HOH HOH . F 5 HOH A 87 687 95 HOH HOH . F 5 HOH A 88 688 96 HOH HOH . F 5 HOH A 89 689 98 HOH HOH . F 5 HOH A 90 690 99 HOH HOH . F 5 HOH A 91 691 101 HOH HOH . F 5 HOH A 92 692 102 HOH HOH . F 5 HOH A 93 693 103 HOH HOH . F 5 HOH A 94 694 104 HOH HOH . F 5 HOH A 95 695 106 HOH HOH . F 5 HOH A 96 696 107 HOH HOH . F 5 HOH A 97 697 108 HOH HOH . F 5 HOH A 98 698 109 HOH HOH . F 5 HOH A 99 699 110 HOH HOH . F 5 HOH A 100 700 111 HOH HOH . F 5 HOH A 101 701 112 HOH HOH . F 5 HOH A 102 702 113 HOH HOH . F 5 HOH A 103 703 114 HOH HOH . F 5 HOH A 104 704 115 HOH HOH . F 5 HOH A 105 705 116 HOH HOH . F 5 HOH A 106 706 119 HOH HOH . F 5 HOH A 107 707 120 HOH HOH . F 5 HOH A 108 708 122 HOH HOH . F 5 HOH A 109 709 124 HOH HOH . F 5 HOH A 110 710 125 HOH HOH . F 5 HOH A 111 711 126 HOH HOH . F 5 HOH A 112 712 127 HOH HOH . F 5 HOH A 113 713 128 HOH HOH . F 5 HOH A 114 714 130 HOH HOH . F 5 HOH A 115 715 133 HOH HOH . F 5 HOH A 116 716 134 HOH HOH . F 5 HOH A 117 717 135 HOH HOH . F 5 HOH A 118 718 136 HOH HOH . F 5 HOH A 119 719 137 HOH HOH . F 5 HOH A 120 720 138 HOH HOH . F 5 HOH A 121 721 139 HOH HOH . F 5 HOH A 122 722 140 HOH HOH . F 5 HOH A 123 723 141 HOH HOH . F 5 HOH A 124 724 144 HOH HOH . F 5 HOH A 125 725 146 HOH HOH . F 5 HOH A 126 726 147 HOH HOH . F 5 HOH A 127 727 148 HOH HOH . F 5 HOH A 128 728 149 HOH HOH . F 5 HOH A 129 729 151 HOH HOH . F 5 HOH A 130 730 153 HOH HOH . F 5 HOH A 131 731 154 HOH HOH . F 5 HOH A 132 732 158 HOH HOH . F 5 HOH A 133 733 160 HOH HOH . F 5 HOH A 134 734 161 HOH HOH . F 5 HOH A 135 735 162 HOH HOH . F 5 HOH A 136 736 164 HOH HOH . F 5 HOH A 137 737 165 HOH HOH . F 5 HOH A 138 738 167 HOH HOH . F 5 HOH A 139 739 170 HOH HOH . F 5 HOH A 140 740 173 HOH HOH . F 5 HOH A 141 741 174 HOH HOH . F 5 HOH A 142 742 175 HOH HOH . F 5 HOH A 143 743 176 HOH HOH . F 5 HOH A 144 744 178 HOH HOH . F 5 HOH A 145 745 180 HOH HOH . F 5 HOH A 146 746 181 HOH HOH . F 5 HOH A 147 747 183 HOH HOH . F 5 HOH A 148 748 184 HOH HOH . F 5 HOH A 149 749 185 HOH HOH . F 5 HOH A 150 750 186 HOH HOH . F 5 HOH A 151 751 191 HOH HOH . F 5 HOH A 152 752 192 HOH HOH . F 5 HOH A 153 753 194 HOH HOH . F 5 HOH A 154 754 197 HOH HOH . F 5 HOH A 155 755 200 HOH HOH . F 5 HOH A 156 756 201 HOH HOH . F 5 HOH A 157 757 204 HOH HOH . F 5 HOH A 158 758 205 HOH HOH . F 5 HOH A 159 759 206 HOH HOH . F 5 HOH A 160 760 207 HOH HOH . F 5 HOH A 161 761 209 HOH HOH . F 5 HOH A 162 762 210 HOH HOH . F 5 HOH A 163 763 212 HOH HOH . F 5 HOH A 164 764 213 HOH HOH . F 5 HOH A 165 765 215 HOH HOH . F 5 HOH A 166 766 218 HOH HOH . F 5 HOH A 167 767 219 HOH HOH . F 5 HOH A 168 768 220 HOH HOH . F 5 HOH A 169 769 225 HOH HOH . F 5 HOH A 170 770 228 HOH HOH . F 5 HOH A 171 771 229 HOH HOH . F 5 HOH A 172 772 230 HOH HOH . F 5 HOH A 173 773 231 HOH HOH . F 5 HOH A 174 774 232 HOH HOH . F 5 HOH A 175 775 235 HOH HOH . F 5 HOH A 176 776 236 HOH HOH . F 5 HOH A 177 777 239 HOH HOH . F 5 HOH A 178 778 243 HOH HOH . F 5 HOH A 179 779 244 HOH HOH . F 5 HOH A 180 780 245 HOH HOH . F 5 HOH A 181 781 246 HOH HOH . F 5 HOH A 182 782 247 HOH HOH . F 5 HOH A 183 783 248 HOH HOH . F 5 HOH A 184 784 250 HOH HOH . F 5 HOH A 185 785 251 HOH HOH . F 5 HOH A 186 786 253 HOH HOH . F 5 HOH A 187 787 255 HOH HOH . F 5 HOH A 188 788 256 HOH HOH . F 5 HOH A 189 789 258 HOH HOH . F 5 HOH A 190 790 261 HOH HOH . F 5 HOH A 191 791 262 HOH HOH . F 5 HOH A 192 792 264 HOH HOH . F 5 HOH A 193 793 266 HOH HOH . F 5 HOH A 194 794 267 HOH HOH . F 5 HOH A 195 795 268 HOH HOH . F 5 HOH A 196 796 1208 HOH HOH . F 5 HOH A 197 797 1209 HOH HOH . F 5 HOH A 198 798 1210 HOH HOH . F 5 HOH A 199 799 1214 HOH HOH . F 5 HOH A 200 800 1216 HOH HOH . F 5 HOH A 201 801 1217 HOH HOH . F 5 HOH A 202 802 1218 HOH HOH . F 5 HOH A 203 803 1220 HOH HOH . F 5 HOH A 204 804 1221 HOH HOH . F 5 HOH A 205 805 1223 HOH HOH . F 5 HOH A 206 806 1224 HOH HOH . F 5 HOH A 207 807 1225 HOH HOH . F 5 HOH A 208 808 1228 HOH HOH . F 5 HOH A 209 809 1230 HOH HOH . F 5 HOH A 210 810 1232 HOH HOH . F 5 HOH A 211 811 1238 HOH HOH . F 5 HOH A 212 812 1242 HOH HOH . F 5 HOH A 213 813 1244 HOH HOH . F 5 HOH A 214 814 1246 HOH HOH . F 5 HOH A 215 815 1248 HOH HOH . F 5 HOH A 216 816 1250 HOH HOH . F 5 HOH A 217 817 1251 HOH HOH . F 5 HOH A 218 818 1253 HOH HOH . F 5 HOH A 219 819 1261 HOH HOH . F 5 HOH A 220 820 1262 HOH HOH . F 5 HOH A 221 821 1270 HOH HOH . F 5 HOH A 222 822 1271 HOH HOH . F 5 HOH A 223 823 1272 HOH HOH . F 5 HOH A 224 824 1274 HOH HOH . F 5 HOH A 225 825 1278 HOH HOH . F 5 HOH A 226 826 1279 HOH HOH . F 5 HOH A 227 827 1281 HOH HOH . F 5 HOH A 228 828 1289 HOH HOH . F 5 HOH A 229 829 1291 HOH HOH . F 5 HOH A 230 830 1296 HOH HOH . F 5 HOH A 231 831 1301 HOH HOH . F 5 HOH A 232 832 1318 HOH HOH . F 5 HOH A 233 833 2214 HOH HOH . F 5 HOH A 234 834 2216 HOH HOH . F 5 HOH A 235 835 2217 HOH HOH . F 5 HOH A 236 836 2218 HOH HOH . F 5 HOH A 237 837 2220 HOH HOH . F 5 HOH A 238 838 2221 HOH HOH . F 5 HOH A 239 839 2222 HOH HOH . F 5 HOH A 240 840 2223 HOH HOH . F 5 HOH A 241 841 2225 HOH HOH . F 5 HOH A 242 842 2227 HOH HOH . F 5 HOH A 243 843 2228 HOH HOH . F 5 HOH A 244 844 2229 HOH HOH . F 5 HOH A 245 845 2235 HOH HOH . F 5 HOH A 246 846 2237 HOH HOH . F 5 HOH A 247 847 2240 HOH HOH . F 5 HOH A 248 848 2242 HOH HOH . F 5 HOH A 249 849 2244 HOH HOH . F 5 HOH A 250 850 2245 HOH HOH . F 5 HOH A 251 851 2246 HOH HOH . F 5 HOH A 252 852 2253 HOH HOH . F 5 HOH A 253 853 2258 HOH HOH . F 5 HOH A 254 854 2259 HOH HOH . F 5 HOH A 255 855 2260 HOH HOH . F 5 HOH A 256 856 2266 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 -10.561 -17.41 -6.677 1 66.86 ? S DMS 503 A 1 HETATM 2 O O DMS . . . D 3 -11.221 -18.681 -7.075 1 65.73 ? O DMS 503 A 1 HETATM 3 C C1 DMS . . . D 3 -8.969 -17.445 -7.303 1 65.43 ? C1 DMS 503 A 1 HETATM 4 C C2 DMS . . . D 3 -11.177 -16.065 -7.552 1 64.12 ? C2 DMS 503 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #