data_4J14 # _model_server_result.job_id 42dA8aaQSyEQe0HPCGujQA _model_server_result.datetime_utc '2024-11-26 03:53:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j14 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4J14 # _exptl.entry_id 4J14 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J14 _cell.length_a 121.64 _cell.length_b 121.64 _cell.length_c 143.39 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J14 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 389 A CYS 437 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C NBD X2N . A X2N 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 142 n n CHA C4D HEM doub 143 n n CHA HHA HEM sing 144 n n CHB C4A HEM sing 145 n n CHB C1B HEM doub 146 n n CHB HHB HEM sing 147 n n CHC C4B HEM sing 148 n n CHC C1C HEM doub 149 n n CHC HHC HEM sing 150 n n CHD C4C HEM doub 151 n n CHD C1D HEM sing 152 n n CHD HHD HEM sing 153 n n C1A C2A HEM doub 154 n y C1A NA HEM sing 155 n y C2A C3A HEM sing 156 n y C2A CAA HEM sing 157 n n C3A C4A HEM doub 158 n y C3A CMA HEM sing 159 n n C4A NA HEM sing 160 n y CMA HMA HEM sing 161 n n CMA HMAA HEM sing 162 n n CMA HMAB HEM sing 163 n n CAA CBA HEM sing 164 n n CAA HAA HEM sing 165 n n CAA HAAA HEM sing 166 n n CBA CGA HEM sing 167 n n CBA HBA HEM sing 168 n n CBA HBAA HEM sing 169 n n CGA O1A HEM doub 170 n n CGA O2A HEM sing 171 n n C1B C2B HEM sing 172 n n C1B NB HEM sing 173 n n C2B C3B HEM doub 174 n n C2B CMB HEM sing 175 n n C3B C4B HEM sing 176 n n C3B CAB HEM sing 177 n n C4B NB HEM doub 178 n n CMB HMB HEM sing 179 n n CMB HMBA HEM sing 180 n n CMB HMBB HEM sing 181 n n CAB CBB HEM doub 182 n n CAB HAB HEM sing 183 n n CBB HBB HEM sing 184 n n CBB HBBA HEM sing 185 n n C1C C2C HEM sing 186 n y C1C NC HEM sing 187 n y C2C C3C HEM doub 188 n y C2C CMC HEM sing 189 n n C3C C4C HEM sing 190 n y C3C CAC HEM sing 191 n n C4C NC HEM sing 192 n y CMC HMC HEM sing 193 n n CMC HMCA HEM sing 194 n n CMC HMCB HEM sing 195 n n CAC CBC HEM doub 196 n n CAC HAC HEM sing 197 n n CBC HBC HEM sing 198 n n CBC HBCA HEM sing 199 n n C1D C2D HEM sing 200 n n C1D ND HEM doub 201 n n C2D C3D HEM doub 202 n n C2D CMD HEM sing 203 n n C3D C4D HEM sing 204 n n C3D CAD HEM sing 205 n n C4D ND HEM sing 206 n n CMD HMD HEM sing 207 n n CMD HMDA HEM sing 208 n n CMD HMDB HEM sing 209 n n CAD CBD HEM sing 210 n n CAD HAD HEM sing 211 n n CAD HADA HEM sing 212 n n CBD CGD HEM sing 213 n n CBD HBD HEM sing 214 n n CBD HBDA HEM sing 215 n n CGD O1D HEM doub 216 n n CGD O2D HEM sing 217 n n O2A H2A HEM sing 218 n n O2D H2D HEM sing 219 n n FE NA HEM sing 220 n n FE NB HEM sing 221 n n FE NC HEM sing 222 n n FE ND HEM sing 223 n n # _atom_sites.entry_id 4J14 _atom_sites.fract_transf_matrix[1][1] 0.008221 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 X2N A 1 602 501 X2N X2N . D 4 GOL A 1 603 600 GOL GOL . E 5 HOH A 1 701 700 HOH HOH . E 5 HOH A 2 702 701 HOH HOH . E 5 HOH A 3 703 702 HOH HOH . E 5 HOH A 4 704 703 HOH HOH . E 5 HOH A 5 705 705 HOH HOH . E 5 HOH A 6 706 706 HOH HOH . E 5 HOH A 7 707 708 HOH HOH . E 5 HOH A 8 708 709 HOH HOH . E 5 HOH A 9 709 710 HOH HOH . E 5 HOH A 10 710 711 HOH HOH . E 5 HOH A 11 711 712 HOH HOH . E 5 HOH A 12 712 713 HOH HOH . E 5 HOH A 13 713 714 HOH HOH . E 5 HOH A 14 714 715 HOH HOH . E 5 HOH A 15 715 716 HOH HOH . E 5 HOH A 16 716 717 HOH HOH . E 5 HOH A 17 717 718 HOH HOH . E 5 HOH A 18 718 719 HOH HOH . E 5 HOH A 19 719 720 HOH HOH . E 5 HOH A 20 720 721 HOH HOH . E 5 HOH A 21 721 722 HOH HOH . E 5 HOH A 22 722 723 HOH HOH . E 5 HOH A 23 723 724 HOH HOH . E 5 HOH A 24 724 725 HOH HOH . E 5 HOH A 25 725 726 HOH HOH . E 5 HOH A 26 726 727 HOH HOH . E 5 HOH A 27 727 728 HOH HOH . E 5 HOH A 28 728 729 HOH HOH . E 5 HOH A 29 729 730 HOH HOH . E 5 HOH A 30 730 731 HOH HOH . E 5 HOH A 31 731 733 HOH HOH . E 5 HOH A 32 732 734 HOH HOH . E 5 HOH A 33 733 735 HOH HOH . E 5 HOH A 34 734 736 HOH HOH . E 5 HOH A 35 735 737 HOH HOH . E 5 HOH A 36 736 738 HOH HOH . E 5 HOH A 37 737 739 HOH HOH . E 5 HOH A 38 738 740 HOH HOH . E 5 HOH A 39 739 741 HOH HOH . E 5 HOH A 40 740 742 HOH HOH . E 5 HOH A 41 741 743 HOH HOH . E 5 HOH A 42 742 744 HOH HOH . E 5 HOH A 43 743 745 HOH HOH . E 5 HOH A 44 744 746 HOH HOH . E 5 HOH A 45 745 747 HOH HOH . E 5 HOH A 46 746 748 HOH HOH . E 5 HOH A 47 747 750 HOH HOH . E 5 HOH A 48 748 751 HOH HOH . E 5 HOH A 49 749 752 HOH HOH . E 5 HOH A 50 750 753 HOH HOH . E 5 HOH A 51 751 754 HOH HOH . E 5 HOH A 52 752 755 HOH HOH . E 5 HOH A 53 753 756 HOH HOH . E 5 HOH A 54 754 757 HOH HOH . E 5 HOH A 55 755 758 HOH HOH . E 5 HOH A 56 756 759 HOH HOH . E 5 HOH A 57 757 761 HOH HOH . E 5 HOH A 58 758 762 HOH HOH . E 5 HOH A 59 759 763 HOH HOH . E 5 HOH A 60 760 764 HOH HOH . E 5 HOH A 61 761 765 HOH HOH . E 5 HOH A 62 762 766 HOH HOH . E 5 HOH A 63 763 767 HOH HOH . E 5 HOH A 64 764 768 HOH HOH . E 5 HOH A 65 765 769 HOH HOH . E 5 HOH A 66 766 770 HOH HOH . E 5 HOH A 67 767 771 HOH HOH . E 5 HOH A 68 768 772 HOH HOH . E 5 HOH A 69 769 773 HOH HOH . E 5 HOH A 70 770 774 HOH HOH . E 5 HOH A 71 771 775 HOH HOH . E 5 HOH A 72 772 776 HOH HOH . E 5 HOH A 73 773 777 HOH HOH . E 5 HOH A 74 774 778 HOH HOH . E 5 HOH A 75 775 779 HOH HOH . E 5 HOH A 76 776 780 HOH HOH . E 5 HOH A 77 777 781 HOH HOH . E 5 HOH A 78 778 782 HOH HOH . E 5 HOH A 79 779 783 HOH HOH . E 5 HOH A 80 780 784 HOH HOH . E 5 HOH A 81 781 785 HOH HOH . E 5 HOH A 82 782 786 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -1.69 -29.764 -7.513 1 20.14 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 2.816 -31.654 -8.204 1 12.64 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 0.94 -36.101 -7.445 1 14.11 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -3.535 -34.001 -6.913 1 18.74 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -0.234 -29.898 -7.802 1 15.85 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 0.667 -28.751 -8.208 1 17.26 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 1.864 -29.315 -8.342 1 16.03 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 1.766 -30.808 -8.173 1 17.33 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 3.105 -28.614 -8.847 1 14.28 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 0.21 -27.809 -9.32 1 21.84 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -0.454 -26.585 -8.76 1 24.48 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -0.639 -25.547 -9.852 1 26.17 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -1.121 -25.721 -10.981 1 22.15 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -0.272 -24.336 -9.492 1 29.51 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 2.658 -33.141 -8.208 1 12.03 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 3.712 -33.977 -8.278 1 12.15 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 3.213 -35.356 -8.025 1 11.87 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 1.761 -35.125 -7.856 1 12.08 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 5.116 -33.596 -8.703 1 11.74 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 3.792 -36.52 -8.279 1 11.79 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 5.132 -36.899 -7.681 1 12.45 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -0.431 -35.893 -6.937 1 15.2 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -1.284 -36.917 -6.846 1 18.7 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -2.625 -36.277 -6.726 1 19.97 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -2.446 -34.998 -7.114 1 17.32 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -1.007 -38.331 -6.361 1 17.23 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -3.917 -36.966 -6.329 1 17.88 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -4.013 -38.002 -5.493 1 15.36 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -3.418 -32.748 -7.287 1 18.7 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -4.533 -31.769 -7.231 1 20.36 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -3.974 -30.585 -7.063 1 20.88 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -2.521 -30.773 -7.327 1 20.07 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -5.991 -32.061 -6.951 1 21.66 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -4.72 -29.266 -6.939 1 23.11 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -4.725 -28.899 -5.457 1 24.97 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -5.424 -27.595 -5.196 1 25.52 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -6.073 -27.474 -4.159 1 25.65 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -5.295 -26.591 -6.067 1 25.23 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 0.481 -31.127 -7.942 1 14.68 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 1.568 -33.79 -7.798 1 12.18 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -1.12 -34.772 -7.253 1 15.1 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -2.264 -32.079 -7.4 1 18.45 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -0.385 -32.872 -7.399 1 16.75 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 28 _model_server_stats.element_count 43 #