data_4J14
#
_model_server_result.job_id            h-aPKqyxsfFMtrCYHYpfFw 
_model_server_result.datetime_utc      '2024-11-26 03:33:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j14 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    4J14 
#
_exptl.entry_id    4J14 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4J14 
_cell.length_a            121.64 
_cell.length_b            121.64 
_cell.length_c            143.39 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J14 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 389 A CYS 437 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C NBD X2N . A X2N 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4J14 
_atom_sites.fract_transf_matrix[1][1]    0.008221 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008221 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006974 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 X2N A 1 602 501 X2N X2N . 
D 4 GOL A 1 603 600 GOL GOL . 
E 5 HOH A 1 701 700 HOH HOH . 
E 5 HOH A 2 702 701 HOH HOH . 
E 5 HOH A 3 703 702 HOH HOH . 
E 5 HOH A 4 704 703 HOH HOH . 
E 5 HOH A 5 705 705 HOH HOH . 
E 5 HOH A 6 706 706 HOH HOH . 
E 5 HOH A 7 707 708 HOH HOH . 
E 5 HOH A 8 708 709 HOH HOH . 
E 5 HOH A 9 709 710 HOH HOH . 
E 5 HOH A 10 710 711 HOH HOH . 
E 5 HOH A 11 711 712 HOH HOH . 
E 5 HOH A 12 712 713 HOH HOH . 
E 5 HOH A 13 713 714 HOH HOH . 
E 5 HOH A 14 714 715 HOH HOH . 
E 5 HOH A 15 715 716 HOH HOH . 
E 5 HOH A 16 716 717 HOH HOH . 
E 5 HOH A 17 717 718 HOH HOH . 
E 5 HOH A 18 718 719 HOH HOH . 
E 5 HOH A 19 719 720 HOH HOH . 
E 5 HOH A 20 720 721 HOH HOH . 
E 5 HOH A 21 721 722 HOH HOH . 
E 5 HOH A 22 722 723 HOH HOH . 
E 5 HOH A 23 723 724 HOH HOH . 
E 5 HOH A 24 724 725 HOH HOH . 
E 5 HOH A 25 725 726 HOH HOH . 
E 5 HOH A 26 726 727 HOH HOH . 
E 5 HOH A 27 727 728 HOH HOH . 
E 5 HOH A 28 728 729 HOH HOH . 
E 5 HOH A 29 729 730 HOH HOH . 
E 5 HOH A 30 730 731 HOH HOH . 
E 5 HOH A 31 731 733 HOH HOH . 
E 5 HOH A 32 732 734 HOH HOH . 
E 5 HOH A 33 733 735 HOH HOH . 
E 5 HOH A 34 734 736 HOH HOH . 
E 5 HOH A 35 735 737 HOH HOH . 
E 5 HOH A 36 736 738 HOH HOH . 
E 5 HOH A 37 737 739 HOH HOH . 
E 5 HOH A 38 738 740 HOH HOH . 
E 5 HOH A 39 739 741 HOH HOH . 
E 5 HOH A 40 740 742 HOH HOH . 
E 5 HOH A 41 741 743 HOH HOH . 
E 5 HOH A 42 742 744 HOH HOH . 
E 5 HOH A 43 743 745 HOH HOH . 
E 5 HOH A 44 744 746 HOH HOH . 
E 5 HOH A 45 745 747 HOH HOH . 
E 5 HOH A 46 746 748 HOH HOH . 
E 5 HOH A 47 747 750 HOH HOH . 
E 5 HOH A 48 748 751 HOH HOH . 
E 5 HOH A 49 749 752 HOH HOH . 
E 5 HOH A 50 750 753 HOH HOH . 
E 5 HOH A 51 751 754 HOH HOH . 
E 5 HOH A 52 752 755 HOH HOH . 
E 5 HOH A 53 753 756 HOH HOH . 
E 5 HOH A 54 754 757 HOH HOH . 
E 5 HOH A 55 755 758 HOH HOH . 
E 5 HOH A 56 756 759 HOH HOH . 
E 5 HOH A 57 757 761 HOH HOH . 
E 5 HOH A 58 758 762 HOH HOH . 
E 5 HOH A 59 759 763 HOH HOH . 
E 5 HOH A 60 760 764 HOH HOH . 
E 5 HOH A 61 761 765 HOH HOH . 
E 5 HOH A 62 762 766 HOH HOH . 
E 5 HOH A 63 763 767 HOH HOH . 
E 5 HOH A 64 764 768 HOH HOH . 
E 5 HOH A 65 765 769 HOH HOH . 
E 5 HOH A 66 766 770 HOH HOH . 
E 5 HOH A 67 767 771 HOH HOH . 
E 5 HOH A 68 768 772 HOH HOH . 
E 5 HOH A 69 769 773 HOH HOH . 
E 5 HOH A 70 770 774 HOH HOH . 
E 5 HOH A 71 771 775 HOH HOH . 
E 5 HOH A 72 772 776 HOH HOH . 
E 5 HOH A 73 773 777 HOH HOH . 
E 5 HOH A 74 774 778 HOH HOH . 
E 5 HOH A 75 775 779 HOH HOH . 
E 5 HOH A 76 776 780 HOH HOH . 
E 5 HOH A 77 777 781 HOH HOH . 
E 5 HOH A 78 778 782 HOH HOH . 
E 5 HOH A 79 779 783 HOH HOH . 
E 5 HOH A 80 780 784 HOH HOH . 
E 5 HOH A 81 781 785 HOH HOH . 
E 5 HOH A 82 782 786 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -10.95 -43.026 5.51 1 80.8 ? C1 GOL 603 A 1 
HETATM 2 O O1 GOL . . . D 4 -10.254 -42.761 4.298 1 80.6 ? O1 GOL 603 A 1 
HETATM 3 C C2 GOL . . . D 4 -10.043 -43.017 6.748 1 80.52 ? C2 GOL 603 A 1 
HETATM 4 O O2 GOL . . . D 4 -9.759 -44.34 7.16 1 79.35 ? O2 GOL 603 A 1 
HETATM 5 C C3 GOL . . . D 4 -10.715 -42.268 7.9 1 81.04 ? C3 GOL 603 A 1 
HETATM 6 O O3 GOL . . . D 4 -9.819 -41.323 8.451 1 81.91 ? O3 GOL 603 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#