data_4J16
#
_model_server_result.job_id            0eqOZMuxNt70XPjw7BeErg 
_model_server_result.datetime_utc      '2024-10-18 23:25:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j16 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    4J16 
#
_exptl.entry_id    4J16 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4J16 
_cell.length_a            67.616 
_cell.length_b            75.038 
_cell.length_c            198.144 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J16 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 250 n n 
PA O2A NAD sing 251 n n 
PA O5B NAD sing 252 n n 
PA O3 NAD sing 253 n n 
O2A HOA2 NAD sing 254 n n 
O5B C5B NAD sing 255 n n 
C5B C4B NAD sing 256 n n 
C5B H51A NAD sing 257 n n 
C5B H52A NAD sing 258 n n 
C4B O4B NAD sing 259 n n 
C4B C3B NAD sing 260 n n 
C4B H4B NAD sing 261 n n 
O4B C1B NAD sing 262 n n 
C3B O3B NAD sing 263 n n 
C3B C2B NAD sing 264 n n 
C3B H3B NAD sing 265 n n 
O3B HO3A NAD sing 266 n n 
C2B O2B NAD sing 267 n n 
C2B C1B NAD sing 268 n n 
C2B H2B NAD sing 269 n n 
O2B HO2A NAD sing 270 n n 
C1B N9A NAD sing 271 n n 
C1B H1B NAD sing 272 n n 
N9A C8A NAD sing 273 n y 
N9A C4A NAD sing 274 n y 
C8A N7A NAD doub 275 n y 
C8A H8A NAD sing 276 n n 
N7A C5A NAD sing 277 n y 
C5A C6A NAD sing 278 n y 
C5A C4A NAD doub 279 n y 
C6A N6A NAD sing 280 n n 
C6A N1A NAD doub 281 n y 
N6A H61A NAD sing 282 n n 
N6A H62A NAD sing 283 n n 
N1A C2A NAD sing 284 n y 
C2A N3A NAD doub 285 n y 
C2A H2A NAD sing 286 n n 
N3A C4A NAD sing 287 n y 
O3 PN NAD sing 288 n n 
PN O1N NAD doub 289 n n 
PN O2N NAD sing 290 n n 
PN O5D NAD sing 291 n n 
O5D C5D NAD sing 292 n n 
C5D C4D NAD sing 293 n n 
C5D H51N NAD sing 294 n n 
C5D H52N NAD sing 295 n n 
C4D O4D NAD sing 296 n n 
C4D C3D NAD sing 297 n n 
C4D H4D NAD sing 298 n n 
O4D C1D NAD sing 299 n n 
C3D O3D NAD sing 300 n n 
C3D C2D NAD sing 301 n n 
C3D H3D NAD sing 302 n n 
O3D HO3N NAD sing 303 n n 
C2D O2D NAD sing 304 n n 
C2D C1D NAD sing 305 n n 
C2D H2D NAD sing 306 n n 
O2D HO2N NAD sing 307 n n 
C1D N1N NAD sing 308 n n 
C1D H1D NAD sing 309 n n 
N1N C2N NAD sing 310 n y 
N1N C6N NAD doub 311 n y 
C2N C3N NAD doub 312 n y 
C2N H2N NAD sing 313 n n 
C3N C7N NAD sing 314 n n 
C3N C4N NAD sing 315 n y 
C7N O7N NAD doub 316 n n 
C7N N7N NAD sing 317 n n 
N7N H71N NAD sing 318 n n 
N7N H72N NAD sing 319 n n 
C4N C5N NAD doub 320 n y 
C4N H4N NAD sing 321 n n 
C5N C6N NAD sing 322 n y 
C5N H5N NAD sing 323 n n 
C6N H6N NAD sing 324 n n 
#
_atom_sites.entry_id                     4J16 
_atom_sites.fract_transf_matrix[1][1]    0.014789 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013327 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005047 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 NAD A 1 500 500 NAD NAD . 
E 3 NAD B 1 401 500 NAD NAD . 
F 4 CL B 1 402 1 CL CL . 
G 5 PGE B 1 403 2 PGE PGE . 
H 6 GOL B 1 404 3 GOL GOL . 
I 7 NAP C 1 501 500 NAP NAP . 
J 6 GOL C 1 502 4 GOL GOL . 
K 8 HOH A 1 601 1 HOH HOH . 
K 8 HOH A 2 602 3 HOH HOH . 
K 8 HOH A 3 603 4 HOH HOH . 
K 8 HOH A 4 604 8 HOH HOH . 
K 8 HOH A 5 605 9 HOH HOH . 
K 8 HOH A 6 606 11 HOH HOH . 
K 8 HOH A 7 607 15 HOH HOH . 
K 8 HOH A 8 608 16 HOH HOH . 
K 8 HOH A 9 609 18 HOH HOH . 
K 8 HOH A 10 610 19 HOH HOH . 
K 8 HOH A 11 611 23 HOH HOH . 
K 8 HOH A 12 612 28 HOH HOH . 
K 8 HOH A 13 613 30 HOH HOH . 
K 8 HOH A 14 614 31 HOH HOH . 
K 8 HOH A 15 615 32 HOH HOH . 
K 8 HOH A 16 616 36 HOH HOH . 
K 8 HOH A 17 617 41 HOH HOH . 
K 8 HOH A 18 618 44 HOH HOH . 
K 8 HOH A 19 619 45 HOH HOH . 
K 8 HOH A 20 620 47 HOH HOH . 
K 8 HOH A 21 621 48 HOH HOH . 
K 8 HOH A 22 622 50 HOH HOH . 
K 8 HOH A 23 623 51 HOH HOH . 
K 8 HOH A 24 624 54 HOH HOH . 
K 8 HOH A 25 625 55 HOH HOH . 
K 8 HOH A 26 626 58 HOH HOH . 
K 8 HOH A 27 627 59 HOH HOH . 
K 8 HOH A 28 628 60 HOH HOH . 
K 8 HOH A 29 629 61 HOH HOH . 
K 8 HOH A 30 630 63 HOH HOH . 
K 8 HOH A 31 631 64 HOH HOH . 
K 8 HOH A 32 632 66 HOH HOH . 
K 8 HOH A 33 633 69 HOH HOH . 
K 8 HOH A 34 634 71 HOH HOH . 
K 8 HOH A 35 635 72 HOH HOH . 
K 8 HOH A 36 636 73 HOH HOH . 
K 8 HOH A 37 637 80 HOH HOH . 
K 8 HOH A 38 638 82 HOH HOH . 
K 8 HOH A 39 639 90 HOH HOH . 
K 8 HOH A 40 640 98 HOH HOH . 
K 8 HOH A 41 641 99 HOH HOH . 
K 8 HOH A 42 642 100 HOH HOH . 
K 8 HOH A 43 643 103 HOH HOH . 
K 8 HOH A 44 644 105 HOH HOH . 
K 8 HOH A 45 645 107 HOH HOH . 
K 8 HOH A 46 646 108 HOH HOH . 
K 8 HOH A 47 647 111 HOH HOH . 
K 8 HOH A 48 648 114 HOH HOH . 
K 8 HOH A 49 649 115 HOH HOH . 
K 8 HOH A 50 650 116 HOH HOH . 
K 8 HOH A 51 651 117 HOH HOH . 
K 8 HOH A 52 652 121 HOH HOH . 
L 8 HOH B 1 501 5 HOH HOH . 
L 8 HOH B 2 502 13 HOH HOH . 
L 8 HOH B 3 503 14 HOH HOH . 
L 8 HOH B 4 504 17 HOH HOH . 
L 8 HOH B 5 505 21 HOH HOH . 
L 8 HOH B 6 506 24 HOH HOH . 
L 8 HOH B 7 507 25 HOH HOH . 
L 8 HOH B 8 508 26 HOH HOH . 
L 8 HOH B 9 509 27 HOH HOH . 
L 8 HOH B 10 510 29 HOH HOH . 
L 8 HOH B 11 511 33 HOH HOH . 
L 8 HOH B 12 512 35 HOH HOH . 
L 8 HOH B 13 513 43 HOH HOH . 
L 8 HOH B 14 514 46 HOH HOH . 
L 8 HOH B 15 515 49 HOH HOH . 
L 8 HOH B 16 516 56 HOH HOH . 
L 8 HOH B 17 517 65 HOH HOH . 
L 8 HOH B 18 518 67 HOH HOH . 
L 8 HOH B 19 519 70 HOH HOH . 
L 8 HOH B 20 520 78 HOH HOH . 
L 8 HOH B 21 521 79 HOH HOH . 
L 8 HOH B 22 522 81 HOH HOH . 
L 8 HOH B 23 523 85 HOH HOH . 
L 8 HOH B 24 524 86 HOH HOH . 
L 8 HOH B 25 525 87 HOH HOH . 
L 8 HOH B 26 526 89 HOH HOH . 
L 8 HOH B 27 527 91 HOH HOH . 
L 8 HOH B 28 528 92 HOH HOH . 
L 8 HOH B 29 529 93 HOH HOH . 
L 8 HOH B 30 530 95 HOH HOH . 
L 8 HOH B 31 531 104 HOH HOH . 
L 8 HOH B 32 532 106 HOH HOH . 
L 8 HOH B 33 533 110 HOH HOH . 
L 8 HOH B 34 534 119 HOH HOH . 
L 8 HOH B 35 535 120 HOH HOH . 
M 8 HOH C 1 601 2 HOH HOH . 
M 8 HOH C 2 602 6 HOH HOH . 
M 8 HOH C 3 603 7 HOH HOH . 
M 8 HOH C 4 604 10 HOH HOH . 
M 8 HOH C 5 605 12 HOH HOH . 
M 8 HOH C 6 606 20 HOH HOH . 
M 8 HOH C 7 607 22 HOH HOH . 
M 8 HOH C 8 608 34 HOH HOH . 
M 8 HOH C 9 609 37 HOH HOH . 
M 8 HOH C 10 610 38 HOH HOH . 
M 8 HOH C 11 611 39 HOH HOH . 
M 8 HOH C 12 612 40 HOH HOH . 
M 8 HOH C 13 613 42 HOH HOH . 
M 8 HOH C 14 614 52 HOH HOH . 
M 8 HOH C 15 615 53 HOH HOH . 
M 8 HOH C 16 616 57 HOH HOH . 
M 8 HOH C 17 617 62 HOH HOH . 
M 8 HOH C 18 618 68 HOH HOH . 
M 8 HOH C 19 619 74 HOH HOH . 
M 8 HOH C 20 620 75 HOH HOH . 
M 8 HOH C 21 621 76 HOH HOH . 
M 8 HOH C 22 622 77 HOH HOH . 
M 8 HOH C 23 623 83 HOH HOH . 
M 8 HOH C 24 624 84 HOH HOH . 
M 8 HOH C 25 625 88 HOH HOH . 
M 8 HOH C 26 626 94 HOH HOH . 
M 8 HOH C 27 627 96 HOH HOH . 
M 8 HOH C 28 628 97 HOH HOH . 
M 8 HOH C 29 629 101 HOH HOH . 
M 8 HOH C 30 630 102 HOH HOH . 
M 8 HOH C 31 631 109 HOH HOH . 
M 8 HOH C 32 632 112 HOH HOH . 
M 8 HOH C 33 633 113 HOH HOH . 
M 8 HOH C 34 634 118 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . E 3 28.771 -28.586 -35.886 1 70.78 ? PA NAD 401 B 1 
HETATM 2 O O1A NAD . . . E 3 29.754 -27.304 -36.186 1 71.08 ? O1A NAD 401 B 1 
HETATM 3 O O2A NAD . . . E 3 28.784 -29.831 -36.952 1 74.68 ? O2A NAD 401 B 1 
HETATM 4 O O5B NAD . . . E 3 27.272 -27.966 -35.764 1 70 ? O5B NAD 401 B 1 
HETATM 5 C C5B NAD . . . E 3 26.245 -28.918 -35.731 1 69.38 ? C5B NAD 401 B 1 
HETATM 6 C C4B NAD . . . E 3 25.484 -28.759 -34.431 1 68.55 ? C4B NAD 401 B 1 
HETATM 7 O O4B NAD . . . E 3 24.183 -28.407 -34.905 1 70.64 ? O4B NAD 401 B 1 
HETATM 8 C C3B NAD . . . E 3 25.335 -30.149 -33.819 1 69.34 ? C3B NAD 401 B 1 
HETATM 9 O O3B NAD . . . E 3 24.894 -30.06 -32.464 1 67.53 ? O3B NAD 401 B 1 
HETATM 10 C C2B NAD . . . E 3 24.198 -30.764 -34.641 1 71.92 ? C2B NAD 401 B 1 
HETATM 11 O O2B NAD . . . E 3 23.535 -31.868 -34.004 1 72.36 ? O2B NAD 401 B 1 
HETATM 12 C C1B NAD . . . E 3 23.307 -29.534 -34.876 1 71.03 ? C1B NAD 401 B 1 
HETATM 13 N N9A NAD . . . E 3 22.566 -29.802 -36.1 1 73.89 ? N9A NAD 401 B 1 
HETATM 14 C C8A NAD . . . E 3 23.088 -30.254 -37.255 1 73.59 ? C8A NAD 401 B 1 
HETATM 15 N N7A NAD . . . E 3 22.1 -30.41 -38.15 1 75.49 ? N7A NAD 401 B 1 
HETATM 16 C C5A NAD . . . E 3 20.925 -30.073 -37.572 1 76.3 ? C5A NAD 401 B 1 
HETATM 17 C C6A NAD . . . E 3 19.601 -30.041 -38.008 1 77.56 ? C6A NAD 401 B 1 
HETATM 18 N N6A NAD . . . E 3 19.286 -30.398 -39.254 1 79.83 ? N6A NAD 401 B 1 
HETATM 19 N N1A NAD . . . E 3 18.616 -29.642 -37.176 1 78.85 ? N1A NAD 401 B 1 
HETATM 20 C C2A NAD . . . E 3 18.933 -29.272 -35.918 1 78.74 ? C2A NAD 401 B 1 
HETATM 21 N N3A NAD . . . E 3 20.204 -29.29 -35.46 1 76.08 ? N3A NAD 401 B 1 
HETATM 22 C C4A NAD . . . E 3 21.228 -29.685 -36.262 1 75.85 ? C4A NAD 401 B 1 
HETATM 23 O O3 NAD . . . E 3 28.924 -29.287 -34.408 1 75.01 ? O3 NAD 401 B 1 
HETATM 24 P PN NAD . . . E 3 30.269 -29.032 -33.501 1 73.29 ? PN NAD 401 B 1 
HETATM 25 O O1N NAD . . . E 3 29.927 -27.763 -32.517 1 74.53 ? O1N NAD 401 B 1 
HETATM 26 O O2N NAD . . . E 3 31.601 -29.048 -34.46 1 74.87 ? O2N NAD 401 B 1 
HETATM 27 O O5D NAD . . . E 3 30.384 -30.399 -32.603 1 76.39 ? O5D NAD 401 B 1 
HETATM 28 C C5D NAD . . . E 3 30.4 -31.646 -33.303 1 83.79 ? C5D NAD 401 B 1 
HETATM 29 C C4D NAD . . . E 3 30.525 -32.725 -32.215 1 88.67 ? C4D NAD 401 B 1 
HETATM 30 O O4D NAD . . . E 3 31.638 -32.514 -31.324 1 90.6 ? O4D NAD 401 B 1 
HETATM 31 C C3D NAD . . . E 3 29.28 -32.613 -31.33 1 88.84 ? C3D NAD 401 B 1 
HETATM 32 O O3D NAD . . . E 3 28.758 -33.929 -31.158 1 89.18 ? O3D NAD 401 B 1 
HETATM 33 C C2D NAD . . . E 3 29.823 -32.176 -29.96 1 88.11 ? C2D NAD 401 B 1 
HETATM 34 O O2D NAD . . . E 3 29.003 -32.733 -28.927 1 89.41 ? O2D NAD 401 B 1 
HETATM 35 C C1D NAD . . . E 3 31.187 -32.855 -30.007 1 89.98 ? C1D NAD 401 B 1 
HETATM 36 N N1N NAD . . . E 3 32.045 -32.341 -28.947 1 89.82 ? N1N NAD 401 B 1 
HETATM 37 C C2N NAD . . . E 3 32.315 -33.171 -27.916 1 91.74 ? C2N NAD 401 B 1 
HETATM 38 C C3N NAD . . . E 3 33.118 -32.752 -26.86 1 91.35 ? C3N NAD 401 B 1 
HETATM 39 C C7N NAD . . . E 3 33.404 -33.685 -25.737 1 92.77 ? C7N NAD 401 B 1 
HETATM 40 O O7N NAD . . . E 3 32.534 -34.453 -25.364 1 94.97 ? O7N NAD 401 B 1 
HETATM 41 N N7N NAD . . . E 3 34.62 -33.64 -25.181 1 94.81 ? N7N NAD 401 B 1 
HETATM 42 C C4N NAD . . . E 3 33.644 -31.458 -26.854 1 91.27 ? C4N NAD 401 B 1 
HETATM 43 C C5N NAD . . . E 3 33.346 -30.62 -27.93 1 88.95 ? C5N NAD 401 B 1 
HETATM 44 C C6N NAD . . . E 3 32.539 -31.077 -28.973 1 89.43 ? C6N NAD 401 B 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           44 
#