data_4J16 # _model_server_result.job_id xDeHB3HRqDWrfhIZ-mbUnA _model_server_result.datetime_utc '2024-10-18 23:27:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":403}' # _entry.id 4J16 # _exptl.entry_id 4J16 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J16 _cell.length_a 67.616 _cell.length_b 75.038 _cell.length_c 198.144 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 405 n n C1 C2 PGE sing 406 n n C1 H1 PGE sing 407 n n C1 H12 PGE sing 408 n n O1 HO1 PGE sing 409 n n C2 O2 PGE sing 410 n n C2 H2 PGE sing 411 n n C2 H22 PGE sing 412 n n O2 C3 PGE sing 413 n n C3 C4 PGE sing 414 n n C3 H3 PGE sing 415 n n C3 H32 PGE sing 416 n n C4 O3 PGE sing 417 n n C4 H4 PGE sing 418 n n C4 H42 PGE sing 419 n n O4 C6 PGE sing 420 n n O4 HO4 PGE sing 421 n n C6 C5 PGE sing 422 n n C6 H6 PGE sing 423 n n C6 H62 PGE sing 424 n n C5 O3 PGE sing 425 n n C5 H5 PGE sing 426 n n C5 H52 PGE sing 427 n n # _atom_sites.entry_id 4J16 _atom_sites.fract_transf_matrix[1][1] 0.014789 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013327 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAD A 1 500 500 NAD NAD . E 3 NAD B 1 401 500 NAD NAD . F 4 CL B 1 402 1 CL CL . G 5 PGE B 1 403 2 PGE PGE . H 6 GOL B 1 404 3 GOL GOL . I 7 NAP C 1 501 500 NAP NAP . J 6 GOL C 1 502 4 GOL GOL . K 8 HOH A 1 601 1 HOH HOH . K 8 HOH A 2 602 3 HOH HOH . K 8 HOH A 3 603 4 HOH HOH . K 8 HOH A 4 604 8 HOH HOH . K 8 HOH A 5 605 9 HOH HOH . K 8 HOH A 6 606 11 HOH HOH . K 8 HOH A 7 607 15 HOH HOH . K 8 HOH A 8 608 16 HOH HOH . K 8 HOH A 9 609 18 HOH HOH . K 8 HOH A 10 610 19 HOH HOH . K 8 HOH A 11 611 23 HOH HOH . K 8 HOH A 12 612 28 HOH HOH . K 8 HOH A 13 613 30 HOH HOH . K 8 HOH A 14 614 31 HOH HOH . K 8 HOH A 15 615 32 HOH HOH . K 8 HOH A 16 616 36 HOH HOH . K 8 HOH A 17 617 41 HOH HOH . K 8 HOH A 18 618 44 HOH HOH . K 8 HOH A 19 619 45 HOH HOH . K 8 HOH A 20 620 47 HOH HOH . K 8 HOH A 21 621 48 HOH HOH . K 8 HOH A 22 622 50 HOH HOH . K 8 HOH A 23 623 51 HOH HOH . K 8 HOH A 24 624 54 HOH HOH . K 8 HOH A 25 625 55 HOH HOH . K 8 HOH A 26 626 58 HOH HOH . K 8 HOH A 27 627 59 HOH HOH . K 8 HOH A 28 628 60 HOH HOH . K 8 HOH A 29 629 61 HOH HOH . K 8 HOH A 30 630 63 HOH HOH . K 8 HOH A 31 631 64 HOH HOH . K 8 HOH A 32 632 66 HOH HOH . K 8 HOH A 33 633 69 HOH HOH . K 8 HOH A 34 634 71 HOH HOH . K 8 HOH A 35 635 72 HOH HOH . K 8 HOH A 36 636 73 HOH HOH . K 8 HOH A 37 637 80 HOH HOH . K 8 HOH A 38 638 82 HOH HOH . K 8 HOH A 39 639 90 HOH HOH . K 8 HOH A 40 640 98 HOH HOH . K 8 HOH A 41 641 99 HOH HOH . K 8 HOH A 42 642 100 HOH HOH . K 8 HOH A 43 643 103 HOH HOH . K 8 HOH A 44 644 105 HOH HOH . K 8 HOH A 45 645 107 HOH HOH . K 8 HOH A 46 646 108 HOH HOH . K 8 HOH A 47 647 111 HOH HOH . K 8 HOH A 48 648 114 HOH HOH . K 8 HOH A 49 649 115 HOH HOH . K 8 HOH A 50 650 116 HOH HOH . K 8 HOH A 51 651 117 HOH HOH . K 8 HOH A 52 652 121 HOH HOH . L 8 HOH B 1 501 5 HOH HOH . L 8 HOH B 2 502 13 HOH HOH . L 8 HOH B 3 503 14 HOH HOH . L 8 HOH B 4 504 17 HOH HOH . L 8 HOH B 5 505 21 HOH HOH . L 8 HOH B 6 506 24 HOH HOH . L 8 HOH B 7 507 25 HOH HOH . L 8 HOH B 8 508 26 HOH HOH . L 8 HOH B 9 509 27 HOH HOH . L 8 HOH B 10 510 29 HOH HOH . L 8 HOH B 11 511 33 HOH HOH . L 8 HOH B 12 512 35 HOH HOH . L 8 HOH B 13 513 43 HOH HOH . L 8 HOH B 14 514 46 HOH HOH . L 8 HOH B 15 515 49 HOH HOH . L 8 HOH B 16 516 56 HOH HOH . L 8 HOH B 17 517 65 HOH HOH . L 8 HOH B 18 518 67 HOH HOH . L 8 HOH B 19 519 70 HOH HOH . L 8 HOH B 20 520 78 HOH HOH . L 8 HOH B 21 521 79 HOH HOH . L 8 HOH B 22 522 81 HOH HOH . L 8 HOH B 23 523 85 HOH HOH . L 8 HOH B 24 524 86 HOH HOH . L 8 HOH B 25 525 87 HOH HOH . L 8 HOH B 26 526 89 HOH HOH . L 8 HOH B 27 527 91 HOH HOH . L 8 HOH B 28 528 92 HOH HOH . L 8 HOH B 29 529 93 HOH HOH . L 8 HOH B 30 530 95 HOH HOH . L 8 HOH B 31 531 104 HOH HOH . L 8 HOH B 32 532 106 HOH HOH . L 8 HOH B 33 533 110 HOH HOH . L 8 HOH B 34 534 119 HOH HOH . L 8 HOH B 35 535 120 HOH HOH . M 8 HOH C 1 601 2 HOH HOH . M 8 HOH C 2 602 6 HOH HOH . M 8 HOH C 3 603 7 HOH HOH . M 8 HOH C 4 604 10 HOH HOH . M 8 HOH C 5 605 12 HOH HOH . M 8 HOH C 6 606 20 HOH HOH . M 8 HOH C 7 607 22 HOH HOH . M 8 HOH C 8 608 34 HOH HOH . M 8 HOH C 9 609 37 HOH HOH . M 8 HOH C 10 610 38 HOH HOH . M 8 HOH C 11 611 39 HOH HOH . M 8 HOH C 12 612 40 HOH HOH . M 8 HOH C 13 613 42 HOH HOH . M 8 HOH C 14 614 52 HOH HOH . M 8 HOH C 15 615 53 HOH HOH . M 8 HOH C 16 616 57 HOH HOH . M 8 HOH C 17 617 62 HOH HOH . M 8 HOH C 18 618 68 HOH HOH . M 8 HOH C 19 619 74 HOH HOH . M 8 HOH C 20 620 75 HOH HOH . M 8 HOH C 21 621 76 HOH HOH . M 8 HOH C 22 622 77 HOH HOH . M 8 HOH C 23 623 83 HOH HOH . M 8 HOH C 24 624 84 HOH HOH . M 8 HOH C 25 625 88 HOH HOH . M 8 HOH C 26 626 94 HOH HOH . M 8 HOH C 27 627 96 HOH HOH . M 8 HOH C 28 628 97 HOH HOH . M 8 HOH C 29 629 101 HOH HOH . M 8 HOH C 30 630 102 HOH HOH . M 8 HOH C 31 631 109 HOH HOH . M 8 HOH C 32 632 112 HOH HOH . M 8 HOH C 33 633 113 HOH HOH . M 8 HOH C 34 634 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . G 5 33.395 -32.399 -36.941 1 72.3 ? C1 PGE 403 B 1 HETATM 2 O O1 PGE . . . G 5 33.942 -31.581 -35.903 1 68.44 ? O1 PGE 403 B 1 HETATM 3 C C2 PGE . . . G 5 32.084 -33.008 -36.445 1 73.56 ? C2 PGE 403 B 1 HETATM 4 O O2 PGE . . . G 5 32.27 -34.408 -36.165 1 72.99 ? O2 PGE 403 B 1 HETATM 5 C C3 PGE . . . G 5 31.319 -35.202 -36.898 1 73 ? C3 PGE 403 B 1 HETATM 6 C C4 PGE . . . G 5 29.875 -34.656 -36.835 1 74.51 ? C4 PGE 403 B 1 HETATM 7 O O4 PGE . . . G 5 26.515 -35.152 -36.866 1 65.37 ? O4 PGE 403 B 1 HETATM 8 C C6 PGE . . . G 5 26.911 -35.566 -35.555 1 71.91 ? C6 PGE 403 B 1 HETATM 9 C C5 PGE . . . G 5 28.364 -36.054 -35.626 1 75.29 ? C5 PGE 403 B 1 HETATM 10 O O3 PGE . . . G 5 29.267 -34.943 -35.563 1 78.42 ? O3 PGE 403 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #