data_4J16
#
_model_server_result.job_id            kL8xdQe_lg_blKoBbp_k1w 
_model_server_result.datetime_utc      '2024-10-18 23:34:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j16 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":501}' 
#
_entry.id    4J16 
#
_exptl.entry_id    4J16 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4J16 
_cell.length_a            67.616 
_cell.length_b            75.038 
_cell.length_c            198.144 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J16 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 325 n n 
PA O2A NAP sing 326 n n 
PA O5B NAP sing 327 n n 
PA O3 NAP sing 328 n n 
O2A HOA2 NAP sing 329 n n 
O5B C5B NAP sing 330 n n 
C5B C4B NAP sing 331 n n 
C5B H51A NAP sing 332 n n 
C5B H52A NAP sing 333 n n 
C4B O4B NAP sing 334 n n 
C4B C3B NAP sing 335 n n 
C4B H4B NAP sing 336 n n 
O4B C1B NAP sing 337 n n 
C3B O3B NAP sing 338 n n 
C3B C2B NAP sing 339 n n 
C3B H3B NAP sing 340 n n 
O3B HO3A NAP sing 341 n n 
C2B O2B NAP sing 342 n n 
C2B C1B NAP sing 343 n n 
C2B H2B NAP sing 344 n n 
O2B P2B NAP sing 345 n n 
C1B N9A NAP sing 346 n n 
C1B H1B NAP sing 347 n n 
N9A C8A NAP sing 348 n y 
N9A C4A NAP sing 349 n y 
C8A N7A NAP doub 350 n y 
C8A H8A NAP sing 351 n n 
N7A C5A NAP sing 352 n y 
C5A C6A NAP sing 353 n y 
C5A C4A NAP doub 354 n y 
C6A N6A NAP sing 355 n n 
C6A N1A NAP doub 356 n y 
N6A H61A NAP sing 357 n n 
N6A H62A NAP sing 358 n n 
N1A C2A NAP sing 359 n y 
C2A N3A NAP doub 360 n y 
C2A H2A NAP sing 361 n n 
N3A C4A NAP sing 362 n y 
O3 PN NAP sing 363 n n 
PN O1N NAP doub 364 n n 
PN O2N NAP sing 365 n n 
PN O5D NAP sing 366 n n 
O5D C5D NAP sing 367 n n 
C5D C4D NAP sing 368 n n 
C5D H51N NAP sing 369 n n 
C5D H52N NAP sing 370 n n 
C4D O4D NAP sing 371 n n 
C4D C3D NAP sing 372 n n 
C4D H4D NAP sing 373 n n 
O4D C1D NAP sing 374 n n 
C3D O3D NAP sing 375 n n 
C3D C2D NAP sing 376 n n 
C3D H3D NAP sing 377 n n 
O3D HO3N NAP sing 378 n n 
C2D O2D NAP sing 379 n n 
C2D C1D NAP sing 380 n n 
C2D H2D NAP sing 381 n n 
O2D HO2N NAP sing 382 n n 
C1D N1N NAP sing 383 n n 
C1D H1D NAP sing 384 n n 
N1N C2N NAP sing 385 n y 
N1N C6N NAP doub 386 n y 
C2N C3N NAP doub 387 n y 
C2N H2N NAP sing 388 n n 
C3N C7N NAP sing 389 n n 
C3N C4N NAP sing 390 n y 
C7N O7N NAP doub 391 n n 
C7N N7N NAP sing 392 n n 
N7N H71N NAP sing 393 n n 
N7N H72N NAP sing 394 n n 
C4N C5N NAP doub 395 n y 
C4N H4N NAP sing 396 n n 
C5N C6N NAP sing 397 n y 
C5N H5N NAP sing 398 n n 
C6N H6N NAP sing 399 n n 
P2B O1X NAP doub 400 n n 
P2B O2X NAP sing 401 n n 
P2B O3X NAP sing 402 n n 
O2X HOP2 NAP sing 403 n n 
O3X HOP3 NAP sing 404 n n 
#
_atom_sites.entry_id                     4J16 
_atom_sites.fract_transf_matrix[1][1]    0.014789 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013327 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005047 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 NAD A 1 500 500 NAD NAD . 
E 3 NAD B 1 401 500 NAD NAD . 
F 4 CL B 1 402 1 CL CL . 
G 5 PGE B 1 403 2 PGE PGE . 
H 6 GOL B 1 404 3 GOL GOL . 
I 7 NAP C 1 501 500 NAP NAP . 
J 6 GOL C 1 502 4 GOL GOL . 
K 8 HOH A 1 601 1 HOH HOH . 
K 8 HOH A 2 602 3 HOH HOH . 
K 8 HOH A 3 603 4 HOH HOH . 
K 8 HOH A 4 604 8 HOH HOH . 
K 8 HOH A 5 605 9 HOH HOH . 
K 8 HOH A 6 606 11 HOH HOH . 
K 8 HOH A 7 607 15 HOH HOH . 
K 8 HOH A 8 608 16 HOH HOH . 
K 8 HOH A 9 609 18 HOH HOH . 
K 8 HOH A 10 610 19 HOH HOH . 
K 8 HOH A 11 611 23 HOH HOH . 
K 8 HOH A 12 612 28 HOH HOH . 
K 8 HOH A 13 613 30 HOH HOH . 
K 8 HOH A 14 614 31 HOH HOH . 
K 8 HOH A 15 615 32 HOH HOH . 
K 8 HOH A 16 616 36 HOH HOH . 
K 8 HOH A 17 617 41 HOH HOH . 
K 8 HOH A 18 618 44 HOH HOH . 
K 8 HOH A 19 619 45 HOH HOH . 
K 8 HOH A 20 620 47 HOH HOH . 
K 8 HOH A 21 621 48 HOH HOH . 
K 8 HOH A 22 622 50 HOH HOH . 
K 8 HOH A 23 623 51 HOH HOH . 
K 8 HOH A 24 624 54 HOH HOH . 
K 8 HOH A 25 625 55 HOH HOH . 
K 8 HOH A 26 626 58 HOH HOH . 
K 8 HOH A 27 627 59 HOH HOH . 
K 8 HOH A 28 628 60 HOH HOH . 
K 8 HOH A 29 629 61 HOH HOH . 
K 8 HOH A 30 630 63 HOH HOH . 
K 8 HOH A 31 631 64 HOH HOH . 
K 8 HOH A 32 632 66 HOH HOH . 
K 8 HOH A 33 633 69 HOH HOH . 
K 8 HOH A 34 634 71 HOH HOH . 
K 8 HOH A 35 635 72 HOH HOH . 
K 8 HOH A 36 636 73 HOH HOH . 
K 8 HOH A 37 637 80 HOH HOH . 
K 8 HOH A 38 638 82 HOH HOH . 
K 8 HOH A 39 639 90 HOH HOH . 
K 8 HOH A 40 640 98 HOH HOH . 
K 8 HOH A 41 641 99 HOH HOH . 
K 8 HOH A 42 642 100 HOH HOH . 
K 8 HOH A 43 643 103 HOH HOH . 
K 8 HOH A 44 644 105 HOH HOH . 
K 8 HOH A 45 645 107 HOH HOH . 
K 8 HOH A 46 646 108 HOH HOH . 
K 8 HOH A 47 647 111 HOH HOH . 
K 8 HOH A 48 648 114 HOH HOH . 
K 8 HOH A 49 649 115 HOH HOH . 
K 8 HOH A 50 650 116 HOH HOH . 
K 8 HOH A 51 651 117 HOH HOH . 
K 8 HOH A 52 652 121 HOH HOH . 
L 8 HOH B 1 501 5 HOH HOH . 
L 8 HOH B 2 502 13 HOH HOH . 
L 8 HOH B 3 503 14 HOH HOH . 
L 8 HOH B 4 504 17 HOH HOH . 
L 8 HOH B 5 505 21 HOH HOH . 
L 8 HOH B 6 506 24 HOH HOH . 
L 8 HOH B 7 507 25 HOH HOH . 
L 8 HOH B 8 508 26 HOH HOH . 
L 8 HOH B 9 509 27 HOH HOH . 
L 8 HOH B 10 510 29 HOH HOH . 
L 8 HOH B 11 511 33 HOH HOH . 
L 8 HOH B 12 512 35 HOH HOH . 
L 8 HOH B 13 513 43 HOH HOH . 
L 8 HOH B 14 514 46 HOH HOH . 
L 8 HOH B 15 515 49 HOH HOH . 
L 8 HOH B 16 516 56 HOH HOH . 
L 8 HOH B 17 517 65 HOH HOH . 
L 8 HOH B 18 518 67 HOH HOH . 
L 8 HOH B 19 519 70 HOH HOH . 
L 8 HOH B 20 520 78 HOH HOH . 
L 8 HOH B 21 521 79 HOH HOH . 
L 8 HOH B 22 522 81 HOH HOH . 
L 8 HOH B 23 523 85 HOH HOH . 
L 8 HOH B 24 524 86 HOH HOH . 
L 8 HOH B 25 525 87 HOH HOH . 
L 8 HOH B 26 526 89 HOH HOH . 
L 8 HOH B 27 527 91 HOH HOH . 
L 8 HOH B 28 528 92 HOH HOH . 
L 8 HOH B 29 529 93 HOH HOH . 
L 8 HOH B 30 530 95 HOH HOH . 
L 8 HOH B 31 531 104 HOH HOH . 
L 8 HOH B 32 532 106 HOH HOH . 
L 8 HOH B 33 533 110 HOH HOH . 
L 8 HOH B 34 534 119 HOH HOH . 
L 8 HOH B 35 535 120 HOH HOH . 
M 8 HOH C 1 601 2 HOH HOH . 
M 8 HOH C 2 602 6 HOH HOH . 
M 8 HOH C 3 603 7 HOH HOH . 
M 8 HOH C 4 604 10 HOH HOH . 
M 8 HOH C 5 605 12 HOH HOH . 
M 8 HOH C 6 606 20 HOH HOH . 
M 8 HOH C 7 607 22 HOH HOH . 
M 8 HOH C 8 608 34 HOH HOH . 
M 8 HOH C 9 609 37 HOH HOH . 
M 8 HOH C 10 610 38 HOH HOH . 
M 8 HOH C 11 611 39 HOH HOH . 
M 8 HOH C 12 612 40 HOH HOH . 
M 8 HOH C 13 613 42 HOH HOH . 
M 8 HOH C 14 614 52 HOH HOH . 
M 8 HOH C 15 615 53 HOH HOH . 
M 8 HOH C 16 616 57 HOH HOH . 
M 8 HOH C 17 617 62 HOH HOH . 
M 8 HOH C 18 618 68 HOH HOH . 
M 8 HOH C 19 619 74 HOH HOH . 
M 8 HOH C 20 620 75 HOH HOH . 
M 8 HOH C 21 621 76 HOH HOH . 
M 8 HOH C 22 622 77 HOH HOH . 
M 8 HOH C 23 623 83 HOH HOH . 
M 8 HOH C 24 624 84 HOH HOH . 
M 8 HOH C 25 625 88 HOH HOH . 
M 8 HOH C 26 626 94 HOH HOH . 
M 8 HOH C 27 627 96 HOH HOH . 
M 8 HOH C 28 628 97 HOH HOH . 
M 8 HOH C 29 629 101 HOH HOH . 
M 8 HOH C 30 630 102 HOH HOH . 
M 8 HOH C 31 631 109 HOH HOH . 
M 8 HOH C 32 632 112 HOH HOH . 
M 8 HOH C 33 633 113 HOH HOH . 
M 8 HOH C 34 634 118 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . I 7 14.751 2.731 0.094 1 47.19 ? PA NAP 501 C 1 
HETATM 2 O O1A NAP . . . I 7 13.207 3.151 0.351 1 49.65 ? O1A NAP 501 C 1 
HETATM 3 O O2A NAP . . . I 7 15.899 3.829 -0.336 1 52.93 ? O2A NAP 501 C 1 
HETATM 4 O O5B NAP . . . I 7 15.264 2.029 1.471 1 48.54 ? O5B NAP 501 C 1 
HETATM 5 C C5B NAP . . . I 7 16.484 1.284 1.46 1 46.93 ? C5B NAP 501 C 1 
HETATM 6 C C4B NAP . . . I 7 16.66 0.627 2.824 1 45.72 ? C4B NAP 501 C 1 
HETATM 7 O O4B NAP . . . I 7 17.73 -0.294 2.787 1 44.35 ? O4B NAP 501 C 1 
HETATM 8 C C3B NAP . . . I 7 17.232 1.605 3.844 1 46.83 ? C3B NAP 501 C 1 
HETATM 9 O O3B NAP . . . I 7 16.103 1.711 4.718 1 48.81 ? O3B NAP 501 C 1 
HETATM 10 C C2B NAP . . . I 7 18.352 0.897 4.608 1 45.08 ? C2B NAP 501 C 1 
HETATM 11 O O2B NAP . . . I 7 18.151 1.021 6.007 1 47.78 ? O2B NAP 501 C 1 
HETATM 12 C C1B NAP . . . I 7 18.239 -0.513 4.084 1 43.74 ? C1B NAP 501 C 1 
HETATM 13 N N9A NAP . . . I 7 19.61 -1.007 3.949 1 47.14 ? N9A NAP 501 C 1 
HETATM 14 C C8A NAP . . . I 7 20.673 -0.328 3.471 1 45.8 ? C8A NAP 501 C 1 
HETATM 15 N N7A NAP . . . I 7 21.752 -1.124 3.501 1 49.35 ? N7A NAP 501 C 1 
HETATM 16 C C5A NAP . . . I 7 21.389 -2.326 3.988 1 48.18 ? C5A NAP 501 C 1 
HETATM 17 C C6A NAP . . . I 7 22.048 -3.531 4.243 1 48.85 ? C6A NAP 501 C 1 
HETATM 18 N N6A NAP . . . I 7 23.355 -3.687 3.991 1 47.24 ? N6A NAP 501 C 1 
HETATM 19 N N1A NAP . . . I 7 21.338 -4.565 4.75 1 47.25 ? N1A NAP 501 C 1 
HETATM 20 C C2A NAP . . . I 7 20.021 -4.468 5.006 1 47.39 ? C2A NAP 501 C 1 
HETATM 21 N N3A NAP . . . I 7 19.375 -3.322 4.757 1 45.43 ? N3A NAP 501 C 1 
HETATM 22 C C4A NAP . . . I 7 20.02 -2.251 4.261 1 47.35 ? C4A NAP 501 C 1 
HETATM 23 O O3 NAP . . . I 7 14.788 1.51 -0.979 1 49.35 ? O3 NAP 501 C 1 
HETATM 24 P PN NAP . . . I 7 13.515 0.799 -1.733 1 47.18 ? PN NAP 501 C 1 
HETATM 25 O O1N NAP . . . I 7 12.382 0.301 -0.646 1 49.94 ? O1N NAP 501 C 1 
HETATM 26 O O2N NAP . . . I 7 14.195 -0.281 -2.769 1 45.3 ? O2N NAP 501 C 1 
HETATM 27 O O5D NAP . . . I 7 12.968 2.057 -2.615 1 46.46 ? O5D NAP 501 C 1 
HETATM 28 C C5D NAP . . . I 7 13.653 2.736 -3.662 1 45.31 ? C5D NAP 501 C 1 
HETATM 29 C C4D NAP . . . I 7 13.517 4.251 -3.506 1 46.26 ? C4D NAP 501 C 1 
HETATM 30 O O4D NAP . . . I 7 14.298 5.013 -4.406 1 46.84 ? O4D NAP 501 C 1 
HETATM 31 C C3D NAP . . . I 7 12.081 4.662 -3.879 1 46.67 ? C3D NAP 501 C 1 
HETATM 32 O O3D NAP . . . I 7 11.916 5.864 -3.119 1 46.54 ? O3D NAP 501 C 1 
HETATM 33 C C2D NAP . . . I 7 12.208 5.051 -5.349 1 48.73 ? C2D NAP 501 C 1 
HETATM 34 O O2D NAP . . . I 7 11.146 5.957 -5.565 1 51.52 ? O2D NAP 501 C 1 
HETATM 35 C C1D NAP . . . I 7 13.546 5.784 -5.346 1 51.65 ? C1D NAP 501 C 1 
HETATM 36 N N1N NAP . . . I 7 14.305 5.713 -6.589 1 56.28 ? N1N NAP 501 C 1 
HETATM 37 C C2N NAP . . . I 7 14.249 4.635 -7.404 1 56.91 ? C2N NAP 501 C 1 
HETATM 38 C C3N NAP . . . I 7 14.988 4.58 -8.584 1 59.53 ? C3N NAP 501 C 1 
HETATM 39 C C7N NAP . . . I 7 14.852 3.354 -9.415 1 60.41 ? C7N NAP 501 C 1 
HETATM 40 O O7N NAP . . . I 7 15.099 3.503 -10.6 1 63.25 ? O7N NAP 501 C 1 
HETATM 41 N N7N NAP . . . I 7 14.492 2.134 -8.982 1 59.81 ? N7N NAP 501 C 1 
HETATM 42 C C4N NAP . . . I 7 15.821 5.658 -8.929 1 61.99 ? C4N NAP 501 C 1 
HETATM 43 C C5N NAP . . . I 7 15.894 6.772 -8.085 1 59.88 ? C5N NAP 501 C 1 
HETATM 44 C C6N NAP . . . I 7 15.112 6.767 -6.92 1 61.68 ? C6N NAP 501 C 1 
HETATM 45 P P2B NAP . . . I 7 19.227 0.752 7.205 1 47.99 ? P2B NAP 501 C 1 
HETATM 46 O O1X NAP . . . I 7 20.255 2.034 7.136 1 54.16 ? O1X NAP 501 C 1 
HETATM 47 O O2X NAP . . . I 7 18.34 0.656 8.575 1 49.05 ? O2X NAP 501 C 1 
HETATM 48 O O3X NAP . . . I 7 19.959 -0.681 6.879 1 50.86 ? O3X NAP 501 C 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#