data_4J17
#
_model_server_result.job_id            z3ww-jY8cIobuLm4wt9y6g 
_model_server_result.datetime_utc      '2024-11-25 02:32:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j17 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    4J17 
#
_exptl.entry_id    4J17 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4J17 
_cell.length_a            102.307 
_cell.length_b            102.307 
_cell.length_c            170.08 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J17 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 171 A CYS 216 1_555 A SG CYS 375 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
disulf ? disulf2 A SG CYS 233 A CYS 278 1_555 A SG CYS 398 A CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
disulf ? disulf3 A SG CYS 285 A CYS 330 1_555 A SG CYS 335 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc1 A O VAL 157 A VAL 202 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc2 A O THR 160 A THR 205 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc3 A O HIS 197 A HIS 242 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc4 A O TYR 200 A TYR 245 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc5 B NA NA . A NA 501 1_555 F O HOH . A HOH 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc6 B NA NA . A NA 501 1_555 F O HOH . A HOH 838 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc7 C NA NA . A NA 502 1_555 F O HOH . A HOH 738 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc8 C NA NA . A NA 502 1_555 F O HOH . A HOH 770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc9 C NA NA . A NA 502 1_555 F O HOH . A HOH 775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc10 C NA NA . A NA 502 1_555 F O HOH . A HOH 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4J17 
_atom_sites.fract_transf_matrix[1][1]    0.009775 
_atom_sites.fract_transf_matrix[1][2]    0.005643 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011287 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00588 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 501 1 NA NA . 
C 2 NA A 1 502 1 NA NA . 
D 3 DMS A 1 503 1 DMS DMS . 
E 4 1HQ A 1 504 1 1HQ 209 . 
F 5 HOH A 1 601 1 HOH HOH . 
F 5 HOH A 2 602 2 HOH HOH . 
F 5 HOH A 3 603 3 HOH HOH . 
F 5 HOH A 4 604 4 HOH HOH . 
F 5 HOH A 5 605 5 HOH HOH . 
F 5 HOH A 6 606 6 HOH HOH . 
F 5 HOH A 7 607 7 HOH HOH . 
F 5 HOH A 8 608 8 HOH HOH . 
F 5 HOH A 9 609 9 HOH HOH . 
F 5 HOH A 10 610 10 HOH HOH . 
F 5 HOH A 11 611 11 HOH HOH . 
F 5 HOH A 12 612 12 HOH HOH . 
F 5 HOH A 13 613 13 HOH HOH . 
F 5 HOH A 14 614 14 HOH HOH . 
F 5 HOH A 15 615 15 HOH HOH . 
F 5 HOH A 16 616 16 HOH HOH . 
F 5 HOH A 17 617 17 HOH HOH . 
F 5 HOH A 18 618 18 HOH HOH . 
F 5 HOH A 19 619 19 HOH HOH . 
F 5 HOH A 20 620 21 HOH HOH . 
F 5 HOH A 21 621 22 HOH HOH . 
F 5 HOH A 22 622 23 HOH HOH . 
F 5 HOH A 23 623 24 HOH HOH . 
F 5 HOH A 24 624 25 HOH HOH . 
F 5 HOH A 25 625 26 HOH HOH . 
F 5 HOH A 26 626 27 HOH HOH . 
F 5 HOH A 27 627 28 HOH HOH . 
F 5 HOH A 28 628 29 HOH HOH . 
F 5 HOH A 29 629 30 HOH HOH . 
F 5 HOH A 30 630 31 HOH HOH . 
F 5 HOH A 31 631 32 HOH HOH . 
F 5 HOH A 32 632 33 HOH HOH . 
F 5 HOH A 33 633 34 HOH HOH . 
F 5 HOH A 34 634 35 HOH HOH . 
F 5 HOH A 35 635 36 HOH HOH . 
F 5 HOH A 36 636 37 HOH HOH . 
F 5 HOH A 37 637 38 HOH HOH . 
F 5 HOH A 38 638 40 HOH HOH . 
F 5 HOH A 39 639 41 HOH HOH . 
F 5 HOH A 40 640 42 HOH HOH . 
F 5 HOH A 41 641 43 HOH HOH . 
F 5 HOH A 42 642 44 HOH HOH . 
F 5 HOH A 43 643 45 HOH HOH . 
F 5 HOH A 44 644 46 HOH HOH . 
F 5 HOH A 45 645 47 HOH HOH . 
F 5 HOH A 46 646 48 HOH HOH . 
F 5 HOH A 47 647 49 HOH HOH . 
F 5 HOH A 48 648 50 HOH HOH . 
F 5 HOH A 49 649 51 HOH HOH . 
F 5 HOH A 50 650 52 HOH HOH . 
F 5 HOH A 51 651 53 HOH HOH . 
F 5 HOH A 52 652 55 HOH HOH . 
F 5 HOH A 53 653 56 HOH HOH . 
F 5 HOH A 54 654 57 HOH HOH . 
F 5 HOH A 55 655 58 HOH HOH . 
F 5 HOH A 56 656 59 HOH HOH . 
F 5 HOH A 57 657 60 HOH HOH . 
F 5 HOH A 58 658 62 HOH HOH . 
F 5 HOH A 59 659 63 HOH HOH . 
F 5 HOH A 60 660 64 HOH HOH . 
F 5 HOH A 61 661 65 HOH HOH . 
F 5 HOH A 62 662 66 HOH HOH . 
F 5 HOH A 63 663 67 HOH HOH . 
F 5 HOH A 64 664 68 HOH HOH . 
F 5 HOH A 65 665 69 HOH HOH . 
F 5 HOH A 66 666 70 HOH HOH . 
F 5 HOH A 67 667 71 HOH HOH . 
F 5 HOH A 68 668 72 HOH HOH . 
F 5 HOH A 69 669 73 HOH HOH . 
F 5 HOH A 70 670 74 HOH HOH . 
F 5 HOH A 71 671 75 HOH HOH . 
F 5 HOH A 72 672 76 HOH HOH . 
F 5 HOH A 73 673 77 HOH HOH . 
F 5 HOH A 74 674 78 HOH HOH . 
F 5 HOH A 75 675 79 HOH HOH . 
F 5 HOH A 76 676 80 HOH HOH . 
F 5 HOH A 77 677 81 HOH HOH . 
F 5 HOH A 78 678 82 HOH HOH . 
F 5 HOH A 79 679 83 HOH HOH . 
F 5 HOH A 80 680 84 HOH HOH . 
F 5 HOH A 81 681 85 HOH HOH . 
F 5 HOH A 82 682 86 HOH HOH . 
F 5 HOH A 83 683 87 HOH HOH . 
F 5 HOH A 84 684 88 HOH HOH . 
F 5 HOH A 85 685 89 HOH HOH . 
F 5 HOH A 86 686 90 HOH HOH . 
F 5 HOH A 87 687 91 HOH HOH . 
F 5 HOH A 88 688 92 HOH HOH . 
F 5 HOH A 89 689 93 HOH HOH . 
F 5 HOH A 90 690 95 HOH HOH . 
F 5 HOH A 91 691 96 HOH HOH . 
F 5 HOH A 92 692 98 HOH HOH . 
F 5 HOH A 93 693 99 HOH HOH . 
F 5 HOH A 94 694 100 HOH HOH . 
F 5 HOH A 95 695 101 HOH HOH . 
F 5 HOH A 96 696 102 HOH HOH . 
F 5 HOH A 97 697 103 HOH HOH . 
F 5 HOH A 98 698 104 HOH HOH . 
F 5 HOH A 99 699 106 HOH HOH . 
F 5 HOH A 100 700 107 HOH HOH . 
F 5 HOH A 101 701 108 HOH HOH . 
F 5 HOH A 102 702 109 HOH HOH . 
F 5 HOH A 103 703 110 HOH HOH . 
F 5 HOH A 104 704 111 HOH HOH . 
F 5 HOH A 105 705 112 HOH HOH . 
F 5 HOH A 106 706 113 HOH HOH . 
F 5 HOH A 107 707 114 HOH HOH . 
F 5 HOH A 108 708 115 HOH HOH . 
F 5 HOH A 109 709 119 HOH HOH . 
F 5 HOH A 110 710 120 HOH HOH . 
F 5 HOH A 111 711 122 HOH HOH . 
F 5 HOH A 112 712 124 HOH HOH . 
F 5 HOH A 113 713 125 HOH HOH . 
F 5 HOH A 114 714 126 HOH HOH . 
F 5 HOH A 115 715 127 HOH HOH . 
F 5 HOH A 116 716 128 HOH HOH . 
F 5 HOH A 117 717 130 HOH HOH . 
F 5 HOH A 118 718 132 HOH HOH . 
F 5 HOH A 119 719 133 HOH HOH . 
F 5 HOH A 120 720 134 HOH HOH . 
F 5 HOH A 121 721 135 HOH HOH . 
F 5 HOH A 122 722 136 HOH HOH . 
F 5 HOH A 123 723 137 HOH HOH . 
F 5 HOH A 124 724 138 HOH HOH . 
F 5 HOH A 125 725 139 HOH HOH . 
F 5 HOH A 126 726 140 HOH HOH . 
F 5 HOH A 127 727 141 HOH HOH . 
F 5 HOH A 128 728 142 HOH HOH . 
F 5 HOH A 129 729 143 HOH HOH . 
F 5 HOH A 130 730 144 HOH HOH . 
F 5 HOH A 131 731 146 HOH HOH . 
F 5 HOH A 132 732 147 HOH HOH . 
F 5 HOH A 133 733 148 HOH HOH . 
F 5 HOH A 134 734 149 HOH HOH . 
F 5 HOH A 135 735 150 HOH HOH . 
F 5 HOH A 136 736 151 HOH HOH . 
F 5 HOH A 137 737 153 HOH HOH . 
F 5 HOH A 138 738 154 HOH HOH . 
F 5 HOH A 139 739 158 HOH HOH . 
F 5 HOH A 140 740 160 HOH HOH . 
F 5 HOH A 141 741 161 HOH HOH . 
F 5 HOH A 142 742 162 HOH HOH . 
F 5 HOH A 143 743 163 HOH HOH . 
F 5 HOH A 144 744 165 HOH HOH . 
F 5 HOH A 145 745 167 HOH HOH . 
F 5 HOH A 146 746 170 HOH HOH . 
F 5 HOH A 147 747 171 HOH HOH . 
F 5 HOH A 148 748 173 HOH HOH . 
F 5 HOH A 149 749 175 HOH HOH . 
F 5 HOH A 150 750 176 HOH HOH . 
F 5 HOH A 151 751 178 HOH HOH . 
F 5 HOH A 152 752 180 HOH HOH . 
F 5 HOH A 153 753 181 HOH HOH . 
F 5 HOH A 154 754 182 HOH HOH . 
F 5 HOH A 155 755 184 HOH HOH . 
F 5 HOH A 156 756 185 HOH HOH . 
F 5 HOH A 157 757 186 HOH HOH . 
F 5 HOH A 158 758 189 HOH HOH . 
F 5 HOH A 159 759 191 HOH HOH . 
F 5 HOH A 160 760 192 HOH HOH . 
F 5 HOH A 161 761 194 HOH HOH . 
F 5 HOH A 162 762 195 HOH HOH . 
F 5 HOH A 163 763 196 HOH HOH . 
F 5 HOH A 164 764 197 HOH HOH . 
F 5 HOH A 165 765 198 HOH HOH . 
F 5 HOH A 166 766 200 HOH HOH . 
F 5 HOH A 167 767 206 HOH HOH . 
F 5 HOH A 168 768 209 HOH HOH . 
F 5 HOH A 169 769 210 HOH HOH . 
F 5 HOH A 170 770 211 HOH HOH . 
F 5 HOH A 171 771 212 HOH HOH . 
F 5 HOH A 172 772 213 HOH HOH . 
F 5 HOH A 173 773 215 HOH HOH . 
F 5 HOH A 174 774 218 HOH HOH . 
F 5 HOH A 175 775 219 HOH HOH . 
F 5 HOH A 176 776 221 HOH HOH . 
F 5 HOH A 177 777 224 HOH HOH . 
F 5 HOH A 178 778 225 HOH HOH . 
F 5 HOH A 179 779 227 HOH HOH . 
F 5 HOH A 180 780 228 HOH HOH . 
F 5 HOH A 181 781 230 HOH HOH . 
F 5 HOH A 182 782 231 HOH HOH . 
F 5 HOH A 183 783 236 HOH HOH . 
F 5 HOH A 184 784 243 HOH HOH . 
F 5 HOH A 185 785 247 HOH HOH . 
F 5 HOH A 186 786 250 HOH HOH . 
F 5 HOH A 187 787 256 HOH HOH . 
F 5 HOH A 188 788 259 HOH HOH . 
F 5 HOH A 189 789 261 HOH HOH . 
F 5 HOH A 190 790 262 HOH HOH . 
F 5 HOH A 191 791 264 HOH HOH . 
F 5 HOH A 192 792 266 HOH HOH . 
F 5 HOH A 193 793 267 HOH HOH . 
F 5 HOH A 194 794 269 HOH HOH . 
F 5 HOH A 195 795 1204 HOH HOH . 
F 5 HOH A 196 796 1205 HOH HOH . 
F 5 HOH A 197 797 1206 HOH HOH . 
F 5 HOH A 198 798 1207 HOH HOH . 
F 5 HOH A 199 799 1209 HOH HOH . 
F 5 HOH A 200 800 1210 HOH HOH . 
F 5 HOH A 201 801 1211 HOH HOH . 
F 5 HOH A 202 802 1213 HOH HOH . 
F 5 HOH A 203 803 1214 HOH HOH . 
F 5 HOH A 204 804 1215 HOH HOH . 
F 5 HOH A 205 805 1216 HOH HOH . 
F 5 HOH A 206 806 1217 HOH HOH . 
F 5 HOH A 207 807 1218 HOH HOH . 
F 5 HOH A 208 808 1219 HOH HOH . 
F 5 HOH A 209 809 1220 HOH HOH . 
F 5 HOH A 210 810 1222 HOH HOH . 
F 5 HOH A 211 811 1225 HOH HOH . 
F 5 HOH A 212 812 1226 HOH HOH . 
F 5 HOH A 213 813 1227 HOH HOH . 
F 5 HOH A 214 814 1228 HOH HOH . 
F 5 HOH A 215 815 1231 HOH HOH . 
F 5 HOH A 216 816 1232 HOH HOH . 
F 5 HOH A 217 817 1233 HOH HOH . 
F 5 HOH A 218 818 1234 HOH HOH . 
F 5 HOH A 219 819 1235 HOH HOH . 
F 5 HOH A 220 820 1236 HOH HOH . 
F 5 HOH A 221 821 1237 HOH HOH . 
F 5 HOH A 222 822 1239 HOH HOH . 
F 5 HOH A 223 823 1242 HOH HOH . 
F 5 HOH A 224 824 1243 HOH HOH . 
F 5 HOH A 225 825 1244 HOH HOH . 
F 5 HOH A 226 826 1246 HOH HOH . 
F 5 HOH A 227 827 1247 HOH HOH . 
F 5 HOH A 228 828 1250 HOH HOH . 
F 5 HOH A 229 829 1259 HOH HOH . 
F 5 HOH A 230 830 1260 HOH HOH . 
F 5 HOH A 231 831 1261 HOH HOH . 
F 5 HOH A 232 832 1262 HOH HOH . 
F 5 HOH A 233 833 1263 HOH HOH . 
F 5 HOH A 234 834 1264 HOH HOH . 
F 5 HOH A 235 835 1265 HOH HOH . 
F 5 HOH A 236 836 1268 HOH HOH . 
F 5 HOH A 237 837 1269 HOH HOH . 
F 5 HOH A 238 838 1272 HOH HOH . 
F 5 HOH A 239 839 1278 HOH HOH . 
F 5 HOH A 240 840 1284 HOH HOH . 
F 5 HOH A 241 841 1285 HOH HOH . 
F 5 HOH A 242 842 1296 HOH HOH . 
F 5 HOH A 243 843 1299 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -4.138 
_atom_site.Cartn_y               -18.986 
_atom_site.Cartn_z               4.733 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        49.16 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#