data_4J1A # _model_server_result.job_id XDE50Dcd6Ui6_Ug5vRPFCg _model_server_result.datetime_utc '2024-11-15 05:24:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j1a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4J1A # _exptl.entry_id 4J1A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J1A _cell.length_a 78.189 _cell.length_b 78.189 _cell.length_c 37.157 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J1A _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc1 A NH2 ARG 14 A ARG 14 1_555 E RU RU . A RU 204 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc2 A O SER 60 A SER 60 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc3 D NA NA . A NA 203 1_555 G O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc4 A O ARG 73 A ARG 73 1_555 D NA NA . A NA 203 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc5 A O ARG 73 A ARG 73 1_555 D NA NA . A NA 203 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc6 D NA NA . A NA 203 1_555 G O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc7 A OD2 ASP 87 A ASP 87 1_555 E RU RU . A RU 204 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc8 E RU RU . A RU 204 1_555 G O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc9 E RU RU . A RU 204 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc10 A O CYS 64 A CYS 64 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc11 A OG SER 72 A SER 72 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc12 A NE2 HIS 15 A HIS 15 1_555 E RU RU . A RU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc13 E RU RU . A RU 204 1_555 G O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4J1A _atom_sites.fract_transf_matrix[1][1] 0.01279 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 1 CL CL . C 2 CL A 1 202 2 CL CL . D 3 NA A 1 203 10 NA NA . E 4 RU A 1 204 5000 RU 1J7 . F 2 CL A 1 205 5000 CL 1J7 . G 5 HOH A 1 301 5000 HOH 1J7 . G 5 HOH A 2 302 5000 HOH 1J7 . G 5 HOH A 3 303 5000 HOH 1J7 . G 5 HOH A 4 304 4 HOH HOH . G 5 HOH A 5 305 6 HOH HOH . G 5 HOH A 6 306 7 HOH HOH . G 5 HOH A 7 307 8 HOH HOH . G 5 HOH A 8 308 9 HOH HOH . G 5 HOH A 9 309 11 HOH HOH . G 5 HOH A 10 310 12 HOH HOH . G 5 HOH A 11 311 18 HOH HOH . G 5 HOH A 12 312 19 HOH HOH . G 5 HOH A 13 313 22 HOH HOH . G 5 HOH A 14 314 23 HOH HOH . G 5 HOH A 15 315 26 HOH HOH . G 5 HOH A 16 316 28 HOH HOH . G 5 HOH A 17 317 30 HOH HOH . G 5 HOH A 18 318 31 HOH HOH . G 5 HOH A 19 319 32 HOH HOH . G 5 HOH A 20 320 33 HOH HOH . G 5 HOH A 21 321 35 HOH HOH . G 5 HOH A 22 322 36 HOH HOH . G 5 HOH A 23 323 37 HOH HOH . G 5 HOH A 24 324 39 HOH HOH . G 5 HOH A 25 325 40 HOH HOH . G 5 HOH A 26 326 42 HOH HOH . G 5 HOH A 27 327 43 HOH HOH . G 5 HOH A 28 328 44 HOH HOH . G 5 HOH A 29 329 45 HOH HOH . G 5 HOH A 30 330 46 HOH HOH . G 5 HOH A 31 331 48 HOH HOH . G 5 HOH A 32 332 50 HOH HOH . G 5 HOH A 33 333 51 HOH HOH . G 5 HOH A 34 334 52 HOH HOH . G 5 HOH A 35 335 53 HOH HOH . G 5 HOH A 36 336 54 HOH HOH . G 5 HOH A 37 337 55 HOH HOH . G 5 HOH A 38 338 58 HOH HOH . G 5 HOH A 39 339 59 HOH HOH . G 5 HOH A 40 340 60 HOH HOH . G 5 HOH A 41 341 62 HOH HOH . G 5 HOH A 42 342 64 HOH HOH . G 5 HOH A 43 343 66 HOH HOH . G 5 HOH A 44 344 67 HOH HOH . G 5 HOH A 45 345 68 HOH HOH . G 5 HOH A 46 346 69 HOH HOH . G 5 HOH A 47 347 72 HOH HOH . G 5 HOH A 48 348 74 HOH HOH . G 5 HOH A 49 349 76 HOH HOH . G 5 HOH A 50 350 80 HOH HOH . G 5 HOH A 51 351 81 HOH HOH . G 5 HOH A 52 352 82 HOH HOH . G 5 HOH A 53 353 83 HOH HOH . G 5 HOH A 54 354 84 HOH HOH . G 5 HOH A 55 355 86 HOH HOH . G 5 HOH A 56 356 88 HOH HOH . G 5 HOH A 57 357 89 HOH HOH . G 5 HOH A 58 358 90 HOH HOH . G 5 HOH A 59 359 91 HOH HOH . G 5 HOH A 60 360 92 HOH HOH . G 5 HOH A 61 361 93 HOH HOH . G 5 HOH A 62 362 94 HOH HOH . G 5 HOH A 63 363 95 HOH HOH . G 5 HOH A 64 364 98 HOH HOH . G 5 HOH A 65 365 101 HOH HOH . G 5 HOH A 66 366 104 HOH HOH . G 5 HOH A 67 367 106 HOH HOH . G 5 HOH A 68 368 107 HOH HOH . G 5 HOH A 69 369 113 HOH HOH . G 5 HOH A 70 370 114 HOH HOH . G 5 HOH A 71 371 117 HOH HOH . G 5 HOH A 72 372 118 HOH HOH . G 5 HOH A 73 373 121 HOH HOH . G 5 HOH A 74 374 122 HOH HOH . G 5 HOH A 75 375 125 HOH HOH . G 5 HOH A 76 376 130 HOH HOH . G 5 HOH A 77 377 132 HOH HOH . G 5 HOH A 78 378 134 HOH HOH . G 5 HOH A 79 379 135 HOH HOH . G 5 HOH A 80 380 137 HOH HOH . G 5 HOH A 81 381 141 HOH HOH . G 5 HOH A 82 382 142 HOH HOH . G 5 HOH A 83 383 147 HOH HOH . G 5 HOH A 84 384 148 HOH HOH . G 5 HOH A 85 385 151 HOH HOH . G 5 HOH A 86 386 156 HOH HOH . G 5 HOH A 87 387 162 HOH HOH . G 5 HOH A 88 388 168 HOH HOH . G 5 HOH A 89 389 170 HOH HOH . G 5 HOH A 90 390 177 HOH HOH . G 5 HOH A 91 391 180 HOH HOH . G 5 HOH A 92 392 181 HOH HOH . G 5 HOH A 93 393 182 HOH HOH . G 5 HOH A 94 394 186 HOH HOH . G 5 HOH A 95 395 187 HOH HOH . G 5 HOH A 96 396 191 HOH HOH . G 5 HOH A 97 397 192 HOH HOH . G 5 HOH A 98 398 194 HOH HOH . G 5 HOH A 99 399 195 HOH HOH . G 5 HOH A 100 400 196 HOH HOH . G 5 HOH A 101 401 197 HOH HOH . G 5 HOH A 102 402 198 HOH HOH . G 5 HOH A 103 403 200 HOH HOH . G 5 HOH A 104 404 201 HOH HOH . G 5 HOH A 105 405 203 HOH HOH . G 5 HOH A 106 406 204 HOH HOH . G 5 HOH A 107 407 205 HOH HOH . G 5 HOH A 108 408 207 HOH HOH . G 5 HOH A 109 409 208 HOH HOH . G 5 HOH A 110 410 209 HOH HOH . G 5 HOH A 111 411 210 HOH HOH . G 5 HOH A 112 412 213 HOH HOH . G 5 HOH A 113 413 214 HOH HOH . G 5 HOH A 114 414 215 HOH HOH . G 5 HOH A 115 415 216 HOH HOH . G 5 HOH A 116 416 217 HOH HOH . G 5 HOH A 117 417 218 HOH HOH . G 5 HOH A 118 418 219 HOH HOH . G 5 HOH A 119 419 220 HOH HOH . G 5 HOH A 120 420 221 HOH HOH . G 5 HOH A 121 421 222 HOH HOH . G 5 HOH A 122 422 223 HOH HOH . G 5 HOH A 123 423 224 HOH HOH . G 5 HOH A 124 424 225 HOH HOH . G 5 HOH A 125 425 226 HOH HOH . G 5 HOH A 126 426 227 HOH HOH . G 5 HOH A 127 427 228 HOH HOH . G 5 HOH A 128 428 229 HOH HOH . G 5 HOH A 129 429 230 HOH HOH . G 5 HOH A 130 430 231 HOH HOH . G 5 HOH A 131 431 232 HOH HOH . G 5 HOH A 132 432 233 HOH HOH . G 5 HOH A 133 433 234 HOH HOH . G 5 HOH A 134 434 235 HOH HOH . G 5 HOH A 135 435 236 HOH HOH . G 5 HOH A 136 436 237 HOH HOH . G 5 HOH A 137 437 238 HOH HOH . G 5 HOH A 138 438 239 HOH HOH . G 5 HOH A 139 439 240 HOH HOH . G 5 HOH A 140 440 241 HOH HOH . G 5 HOH A 141 441 242 HOH HOH . G 5 HOH A 142 442 243 HOH HOH . G 5 HOH A 143 443 244 HOH HOH . G 5 HOH A 144 444 245 HOH HOH . G 5 HOH A 145 445 246 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -13.853 _atom_site.Cartn_y 7.689 _atom_site.Cartn_z 3.528 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #