data_4J1F
#
_model_server_result.job_id            6tlQBYl5M40Fmt2fk2TA6w 
_model_server_result.datetime_utc      '2024-12-17 11:41:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j1f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    4J1F 
#
_exptl.entry_id    4J1F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              421.348 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-{3-[(4S,6S)-2-amino-4-methyl-6-(trifluoromethyl)-5,6-dihydro-4H-1,3-oxazin-4-yl]-4-fluorophenyl}-5-cyanopyridine-2-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4J1F 
_cell.length_a            103.495 
_cell.length_b            103.495 
_cell.length_c            170.358 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J1F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 171 A CYS 216 1_555 A SG CYS 375 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
disulf ? disulf2 A SG CYS 233 A CYS 278 1_555 A SG CYS 398 A CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
disulf ? disulf3 A SG CYS 285 A CYS 330 1_555 A SG CYS 335 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc1 A O VAL 157 A VAL 202 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
metalc ? metalc2 A O THR 160 A THR 205 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc3 A O HIS 197 A HIS 242 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? 
metalc ? metalc4 A O TYR 200 A TYR 245 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? 
metalc ? metalc5 B NA NA . A NA 501 1_555 F O HOH . A HOH 1062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? 
#
_chem_comp.formula           'C19 H15 F4 N5 O2' 
_chem_comp.formula_weight    421.348 
_chem_comp.id                1HL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-{3-[(4S,6S)-2-amino-4-methyl-6-(trifluoromethyl)-5,6-dihydro-4H-1,3-oxazin-4-yl]-4-fluorophenyl}-5-cyanopyridine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F29 C27 1HL sing 1 n n 
F30 C27 1HL sing 2 n n 
F13 C12 1HL sing 3 n n 
C27 F28 1HL sing 4 n n 
C27 C1 1HL sing 5 n n 
C2 C1 1HL sing 6 n n 
C2 C6 1HL sing 7 n n 
C12 C11 1HL doub 8 n y 
C12 C7 1HL sing 9 n y 
C15 C6 1HL sing 10 n n 
C1 O3 1HL sing 11 n n 
C11 C10 1HL sing 12 n y 
C6 C7 1HL sing 13 n n 
C6 N5 1HL sing 14 n n 
C7 C8 1HL doub 15 n y 
O3 C4 1HL sing 16 n n 
C10 C9 1HL doub 17 n y 
N5 C4 1HL doub 18 n n 
C4 N14 1HL sing 19 n n 
C8 C9 1HL sing 20 n y 
C9 N16 1HL sing 21 n n 
O19 C17 1HL doub 22 n n 
N16 C17 1HL sing 23 n n 
C17 C18 1HL sing 24 n n 
C18 C24 1HL doub 25 n y 
C18 N20 1HL sing 26 n y 
C24 C23 1HL sing 27 n y 
N20 C21 1HL doub 28 n y 
C23 C22 1HL doub 29 n y 
C21 C22 1HL sing 30 n y 
C22 C25 1HL sing 31 n n 
C25 N26 1HL trip 32 n n 
C1 H1 1HL sing 33 n n 
C2 H2 1HL sing 34 n n 
C2 H3 1HL sing 35 n n 
C8 H4 1HL sing 36 n n 
C10 H5 1HL sing 37 n n 
C11 H6 1HL sing 38 n n 
N14 H7 1HL sing 39 n n 
N14 H8 1HL sing 40 n n 
C15 H9 1HL sing 41 n n 
C15 H10 1HL sing 42 n n 
C15 H11 1HL sing 43 n n 
N16 H12 1HL sing 44 n n 
C21 H13 1HL sing 45 n n 
C23 H14 1HL sing 46 n n 
C24 H15 1HL sing 47 n n 
#
_atom_sites.entry_id                     4J1F 
_atom_sites.fract_transf_matrix[1][1]    0.009662 
_atom_sites.fract_transf_matrix[1][2]    0.005579 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011157 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00587 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 501 1 NA NA . 
C 2 NA A 1 502 1 NA NA . 
D 3 DMS A 1 503 1 DMS DMS . 
E 4 1HL A 1 504 1 1HL 978 . 
F 5 HOH A 1 1001 1001 HOH HOH . 
F 5 HOH A 2 1002 1002 HOH HOH . 
F 5 HOH A 3 1003 1003 HOH HOH . 
F 5 HOH A 4 1004 1004 HOH HOH . 
F 5 HOH A 5 1005 1005 HOH HOH . 
F 5 HOH A 6 1006 1006 HOH HOH . 
F 5 HOH A 7 1007 1007 HOH HOH . 
F 5 HOH A 8 1008 1008 HOH HOH . 
F 5 HOH A 9 1009 1009 HOH HOH . 
F 5 HOH A 10 1010 1010 HOH HOH . 
F 5 HOH A 11 1011 1011 HOH HOH . 
F 5 HOH A 12 1012 1012 HOH HOH . 
F 5 HOH A 13 1013 1013 HOH HOH . 
F 5 HOH A 14 1014 1014 HOH HOH . 
F 5 HOH A 15 1015 1015 HOH HOH . 
F 5 HOH A 16 1016 1016 HOH HOH . 
F 5 HOH A 17 1017 1017 HOH HOH . 
F 5 HOH A 18 1018 1018 HOH HOH . 
F 5 HOH A 19 1019 1019 HOH HOH . 
F 5 HOH A 20 1020 1020 HOH HOH . 
F 5 HOH A 21 1021 1021 HOH HOH . 
F 5 HOH A 22 1022 1022 HOH HOH . 
F 5 HOH A 23 1023 1023 HOH HOH . 
F 5 HOH A 24 1024 1024 HOH HOH . 
F 5 HOH A 25 1025 1025 HOH HOH . 
F 5 HOH A 26 1026 1026 HOH HOH . 
F 5 HOH A 27 1027 1027 HOH HOH . 
F 5 HOH A 28 1028 1028 HOH HOH . 
F 5 HOH A 29 1029 1029 HOH HOH . 
F 5 HOH A 30 1030 1030 HOH HOH . 
F 5 HOH A 31 1031 1031 HOH HOH . 
F 5 HOH A 32 1032 1032 HOH HOH . 
F 5 HOH A 33 1033 1033 HOH HOH . 
F 5 HOH A 34 1034 1034 HOH HOH . 
F 5 HOH A 35 1035 1035 HOH HOH . 
F 5 HOH A 36 1036 1036 HOH HOH . 
F 5 HOH A 37 1037 1037 HOH HOH . 
F 5 HOH A 38 1038 1038 HOH HOH . 
F 5 HOH A 39 1039 1039 HOH HOH . 
F 5 HOH A 40 1040 1040 HOH HOH . 
F 5 HOH A 41 1041 1041 HOH HOH . 
F 5 HOH A 42 1042 1042 HOH HOH . 
F 5 HOH A 43 1043 1043 HOH HOH . 
F 5 HOH A 44 1044 1044 HOH HOH . 
F 5 HOH A 45 1045 1045 HOH HOH . 
F 5 HOH A 46 1046 1046 HOH HOH . 
F 5 HOH A 47 1047 1047 HOH HOH . 
F 5 HOH A 48 1048 1048 HOH HOH . 
F 5 HOH A 49 1049 1049 HOH HOH . 
F 5 HOH A 50 1050 1050 HOH HOH . 
F 5 HOH A 51 1051 1053 HOH HOH . 
F 5 HOH A 52 1052 1054 HOH HOH . 
F 5 HOH A 53 1053 1056 HOH HOH . 
F 5 HOH A 54 1054 1057 HOH HOH . 
F 5 HOH A 55 1055 1058 HOH HOH . 
F 5 HOH A 56 1056 1060 HOH HOH . 
F 5 HOH A 57 1057 1061 HOH HOH . 
F 5 HOH A 58 1058 1062 HOH HOH . 
F 5 HOH A 59 1059 1063 HOH HOH . 
F 5 HOH A 60 1060 1065 HOH HOH . 
F 5 HOH A 61 1061 1066 HOH HOH . 
F 5 HOH A 62 1062 1069 HOH HOH . 
F 5 HOH A 63 1063 1070 HOH HOH . 
F 5 HOH A 64 1064 1071 HOH HOH . 
F 5 HOH A 65 1065 1072 HOH HOH . 
F 5 HOH A 66 1066 1073 HOH HOH . 
F 5 HOH A 67 1067 1076 HOH HOH . 
F 5 HOH A 68 1068 1077 HOH HOH . 
F 5 HOH A 69 1069 1078 HOH HOH . 
F 5 HOH A 70 1070 1079 HOH HOH . 
F 5 HOH A 71 1071 1081 HOH HOH . 
F 5 HOH A 72 1072 1083 HOH HOH . 
F 5 HOH A 73 1073 1085 HOH HOH . 
F 5 HOH A 74 1074 1088 HOH HOH . 
F 5 HOH A 75 1075 1089 HOH HOH . 
F 5 HOH A 76 1076 1090 HOH HOH . 
F 5 HOH A 77 1077 1092 HOH HOH . 
F 5 HOH A 78 1078 1093 HOH HOH . 
F 5 HOH A 79 1079 1094 HOH HOH . 
F 5 HOH A 80 1080 1095 HOH HOH . 
F 5 HOH A 81 1081 1096 HOH HOH . 
F 5 HOH A 82 1082 1098 HOH HOH . 
F 5 HOH A 83 1083 1100 HOH HOH . 
F 5 HOH A 84 1084 1104 HOH HOH . 
F 5 HOH A 85 1085 1106 HOH HOH . 
F 5 HOH A 86 1086 1108 HOH HOH . 
F 5 HOH A 87 1087 1109 HOH HOH . 
F 5 HOH A 88 1088 1111 HOH HOH . 
F 5 HOH A 89 1089 1112 HOH HOH . 
F 5 HOH A 90 1090 1113 HOH HOH . 
F 5 HOH A 91 1091 1116 HOH HOH . 
F 5 HOH A 92 1092 1120 HOH HOH . 
F 5 HOH A 93 1093 1125 HOH HOH . 
F 5 HOH A 94 1094 1126 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 1HL . . . E 4 -15.705 -42 -9.499 1 39.79 ? C1 1HL 504 A 1 
HETATM 2 C C2 1HL . . . E 4 -15.997 -40.626 -10.123 1 36.08 ? C2 1HL 504 A 1 
HETATM 3 O O3 1HL . . . E 4 -14.833 -41.906 -8.366 1 35.47 ? O3 1HL 504 A 1 
HETATM 4 C C4 1HL . . . E 4 -14.805 -40.756 -7.645 1 36.85 ? C4 1HL 504 A 1 
HETATM 5 N N5 1HL . . . E 4 -15.548 -39.698 -7.886 1 31.87 ? N5 1HL 504 A 1 
HETATM 6 C C6 1HL . . . E 4 -16.443 -39.613 -9.03 1 36.62 ? C6 1HL 504 A 1 
HETATM 7 C C7 1HL . . . E 4 -17.909 -39.935 -8.687 1 34.9 ? C7 1HL 504 A 1 
HETATM 8 C C8 1HL . . . E 4 -18.189 -40.481 -7.445 1 35.39 ? C8 1HL 504 A 1 
HETATM 9 C C9 1HL . . . E 4 -19.511 -40.806 -7.117 1 37.84 ? C9 1HL 504 A 1 
HETATM 10 C C10 1HL . . . E 4 -20.576 -40.631 -8.026 1 39.03 ? C10 1HL 504 A 1 
HETATM 11 C C11 1HL . . . E 4 -20.275 -40.113 -9.289 1 40.55 ? C11 1HL 504 A 1 
HETATM 12 C C12 1HL . . . E 4 -18.95 -39.75 -9.622 1 39.64 ? C12 1HL 504 A 1 
HETATM 13 F F13 1HL . . . E 4 -18.697 -39.253 -10.898 1 44.19 ? F13 1HL 504 A 1 
HETATM 14 N N14 1HL . . . E 4 -13.941 -40.77 -6.552 1 34.35 ? N14 1HL 504 A 1 
HETATM 15 C C15 1HL . . . E 4 -16.239 -38.193 -9.585 1 33.08 ? C15 1HL 504 A 1 
HETATM 16 N N16 1HL . . . E 4 -19.68 -41.385 -5.88 1 39.6 ? N16 1HL 504 A 1 
HETATM 17 C C17 1HL . . . E 4 -20.811 -41.962 -5.368 1 38.37 ? C17 1HL 504 A 1 
HETATM 18 C C18 1HL . . . E 4 -20.673 -42.571 -4.042 1 37.86 ? C18 1HL 504 A 1 
HETATM 19 O O19 1HL . . . E 4 -21.884 -41.983 -5.94 1 38.98 ? O19 1HL 504 A 1 
HETATM 20 N N20 1HL . . . E 4 -19.562 -42.294 -3.332 1 35.49 ? N20 1HL 504 A 1 
HETATM 21 C C21 1HL . . . E 4 -19.371 -42.82 -2.123 1 38.82 ? C21 1HL 504 A 1 
HETATM 22 C C22 1HL . . . E 4 -20.313 -43.721 -1.564 1 38.79 ? C22 1HL 504 A 1 
HETATM 23 C C23 1HL . . . E 4 -21.49 -44.054 -2.326 1 44.09 ? C23 1HL 504 A 1 
HETATM 24 C C24 1HL . . . E 4 -21.677 -43.464 -3.586 1 41.67 ? C24 1HL 504 A 1 
HETATM 25 C C25 1HL . . . E 4 -20.091 -44.293 -0.26 1 41.55 ? C25 1HL 504 A 1 
HETATM 26 N N26 1HL . . . E 4 -19.939 -44.765 0.782 1 42.56 ? N26 1HL 504 A 1 
HETATM 27 C C27 1HL . . . E 4 -14.951 -42.865 -10.518 1 44.08 ? C27 1HL 504 A 1 
HETATM 28 F F28 1HL . . . E 4 -14.677 -44.101 -9.932 1 46.07 ? F28 1HL 504 A 1 
HETATM 29 F F29 1HL . . . E 4 -15.851 -43.137 -11.524 1 41.99 ? F29 1HL 504 A 1 
HETATM 30 F F30 1HL . . . E 4 -13.779 -42.213 -11.015 1 45 ? F30 1HL 504 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           30 
#