data_4J1H
#
_model_server_result.job_id            16hOV09MfWLPVPIQoMMT8g 
_model_server_result.datetime_utc      '2024-11-25 02:28:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j1h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    4J1H 
#
_exptl.entry_id    4J1H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4J1H 
_cell.length_a            102.685 
_cell.length_b            102.685 
_cell.length_c            168.873 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J1H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 171 A CYS 216 1_555 A SG CYS 375 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
disulf ? disulf2 A SG CYS 233 A CYS 278 1_555 A SG CYS 398 A CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
disulf ? disulf3 A SG CYS 285 A CYS 330 1_555 A SG CYS 335 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc1 A O VAL 157 A VAL 202 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc2 A O THR 160 A THR 205 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc3 A O HIS 197 A HIS 242 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc4 A O TYR 200 A TYR 245 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc5 B NA NA . A NA 501 1_555 F O HOH . A HOH 1064 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? 
metalc ? metalc6 C NA NA . A NA 502 1_555 F O HOH . A HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4J1H 
_atom_sites.fract_transf_matrix[1][1]    0.009739 
_atom_sites.fract_transf_matrix[1][2]    0.005623 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011245 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005922 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 501 1 NA NA . 
C 2 NA A 1 502 1 NA NA . 
D 3 DMS A 1 503 1 DMS DMS . 
E 4 1HJ A 1 504 1 1HJ 176 . 
F 5 HOH A 1 1001 1001 HOH HOH . 
F 5 HOH A 2 1002 1002 HOH HOH . 
F 5 HOH A 3 1003 1003 HOH HOH . 
F 5 HOH A 4 1004 1004 HOH HOH . 
F 5 HOH A 5 1005 1005 HOH HOH . 
F 5 HOH A 6 1006 1006 HOH HOH . 
F 5 HOH A 7 1007 1007 HOH HOH . 
F 5 HOH A 8 1008 1008 HOH HOH . 
F 5 HOH A 9 1009 1009 HOH HOH . 
F 5 HOH A 10 1010 1010 HOH HOH . 
F 5 HOH A 11 1011 1011 HOH HOH . 
F 5 HOH A 12 1012 1012 HOH HOH . 
F 5 HOH A 13 1013 1013 HOH HOH . 
F 5 HOH A 14 1014 1014 HOH HOH . 
F 5 HOH A 15 1015 1015 HOH HOH . 
F 5 HOH A 16 1016 1016 HOH HOH . 
F 5 HOH A 17 1017 1017 HOH HOH . 
F 5 HOH A 18 1018 1018 HOH HOH . 
F 5 HOH A 19 1019 1019 HOH HOH . 
F 5 HOH A 20 1020 1020 HOH HOH . 
F 5 HOH A 21 1021 1021 HOH HOH . 
F 5 HOH A 22 1022 1022 HOH HOH . 
F 5 HOH A 23 1023 1023 HOH HOH . 
F 5 HOH A 24 1024 1025 HOH HOH . 
F 5 HOH A 25 1025 1026 HOH HOH . 
F 5 HOH A 26 1026 1027 HOH HOH . 
F 5 HOH A 27 1027 1028 HOH HOH . 
F 5 HOH A 28 1028 1029 HOH HOH . 
F 5 HOH A 29 1029 1030 HOH HOH . 
F 5 HOH A 30 1030 1031 HOH HOH . 
F 5 HOH A 31 1031 1032 HOH HOH . 
F 5 HOH A 32 1032 1033 HOH HOH . 
F 5 HOH A 33 1033 1034 HOH HOH . 
F 5 HOH A 34 1034 1035 HOH HOH . 
F 5 HOH A 35 1035 1036 HOH HOH . 
F 5 HOH A 36 1036 1037 HOH HOH . 
F 5 HOH A 37 1037 1038 HOH HOH . 
F 5 HOH A 38 1038 1039 HOH HOH . 
F 5 HOH A 39 1039 1040 HOH HOH . 
F 5 HOH A 40 1040 1041 HOH HOH . 
F 5 HOH A 41 1041 1042 HOH HOH . 
F 5 HOH A 42 1042 1043 HOH HOH . 
F 5 HOH A 43 1043 1044 HOH HOH . 
F 5 HOH A 44 1044 1045 HOH HOH . 
F 5 HOH A 45 1045 1046 HOH HOH . 
F 5 HOH A 46 1046 1047 HOH HOH . 
F 5 HOH A 47 1047 1048 HOH HOH . 
F 5 HOH A 48 1048 1049 HOH HOH . 
F 5 HOH A 49 1049 1050 HOH HOH . 
F 5 HOH A 50 1050 1051 HOH HOH . 
F 5 HOH A 51 1051 1052 HOH HOH . 
F 5 HOH A 52 1052 1053 HOH HOH . 
F 5 HOH A 53 1053 1055 HOH HOH . 
F 5 HOH A 54 1054 1056 HOH HOH . 
F 5 HOH A 55 1055 1057 HOH HOH . 
F 5 HOH A 56 1056 1058 HOH HOH . 
F 5 HOH A 57 1057 1061 HOH HOH . 
F 5 HOH A 58 1058 1062 HOH HOH . 
F 5 HOH A 59 1059 1063 HOH HOH . 
F 5 HOH A 60 1060 1064 HOH HOH . 
F 5 HOH A 61 1061 1065 HOH HOH . 
F 5 HOH A 62 1062 1066 HOH HOH . 
F 5 HOH A 63 1063 1067 HOH HOH . 
F 5 HOH A 64 1064 1068 HOH HOH . 
F 5 HOH A 65 1065 1069 HOH HOH . 
F 5 HOH A 66 1066 1070 HOH HOH . 
F 5 HOH A 67 1067 1073 HOH HOH . 
F 5 HOH A 68 1068 1074 HOH HOH . 
F 5 HOH A 69 1069 1078 HOH HOH . 
F 5 HOH A 70 1070 1080 HOH HOH . 
F 5 HOH A 71 1071 1081 HOH HOH . 
F 5 HOH A 72 1072 1082 HOH HOH . 
F 5 HOH A 73 1073 1083 HOH HOH . 
F 5 HOH A 74 1074 1084 HOH HOH . 
F 5 HOH A 75 1075 1085 HOH HOH . 
F 5 HOH A 76 1076 1086 HOH HOH . 
F 5 HOH A 77 1077 1087 HOH HOH . 
F 5 HOH A 78 1078 1088 HOH HOH . 
F 5 HOH A 79 1079 1091 HOH HOH . 
F 5 HOH A 80 1080 1092 HOH HOH . 
F 5 HOH A 81 1081 1093 HOH HOH . 
F 5 HOH A 82 1082 1094 HOH HOH . 
F 5 HOH A 83 1083 1095 HOH HOH . 
F 5 HOH A 84 1084 1096 HOH HOH . 
F 5 HOH A 85 1085 1099 HOH HOH . 
F 5 HOH A 86 1086 1101 HOH HOH . 
F 5 HOH A 87 1087 1102 HOH HOH . 
F 5 HOH A 88 1088 1107 HOH HOH . 
F 5 HOH A 89 1089 1108 HOH HOH . 
F 5 HOH A 90 1090 1112 HOH HOH . 
F 5 HOH A 91 1091 1113 HOH HOH . 
F 5 HOH A 92 1092 1115 HOH HOH . 
F 5 HOH A 93 1093 1117 HOH HOH . 
F 5 HOH A 94 1094 1119 HOH HOH . 
F 5 HOH A 95 1095 1120 HOH HOH . 
F 5 HOH A 96 1096 1121 HOH HOH . 
F 5 HOH A 97 1097 1122 HOH HOH . 
F 5 HOH A 98 1098 2091 HOH HOH . 
F 5 HOH A 99 1099 2092 HOH HOH . 
F 5 HOH A 100 1100 2093 HOH HOH . 
F 5 HOH A 101 1101 2094 HOH HOH . 
F 5 HOH A 102 1102 2095 HOH HOH . 
F 5 HOH A 103 1103 2096 HOH HOH . 
F 5 HOH A 104 1104 2098 HOH HOH . 
F 5 HOH A 105 1105 2101 HOH HOH . 
F 5 HOH A 106 1106 2102 HOH HOH . 
F 5 HOH A 107 1107 2103 HOH HOH . 
F 5 HOH A 108 1108 2104 HOH HOH . 
F 5 HOH A 109 1109 2106 HOH HOH . 
F 5 HOH A 110 1110 2107 HOH HOH . 
F 5 HOH A 111 1111 2109 HOH HOH . 
F 5 HOH A 112 1112 2110 HOH HOH . 
F 5 HOH A 113 1113 2111 HOH HOH . 
F 5 HOH A 114 1114 2120 HOH HOH . 
F 5 HOH A 115 1115 2121 HOH HOH . 
F 5 HOH A 116 1116 2123 HOH HOH . 
F 5 HOH A 117 1117 2124 HOH HOH . 
F 5 HOH A 118 1118 2128 HOH HOH . 
F 5 HOH A 119 1119 2129 HOH HOH . 
F 5 HOH A 120 1120 2131 HOH HOH . 
F 5 HOH A 121 1121 2132 HOH HOH . 
F 5 HOH A 122 1122 2135 HOH HOH . 
F 5 HOH A 123 1123 2138 HOH HOH . 
F 5 HOH A 124 1124 2140 HOH HOH . 
F 5 HOH A 125 1125 2142 HOH HOH . 
F 5 HOH A 126 1126 2144 HOH HOH . 
F 5 HOH A 127 1127 2145 HOH HOH . 
F 5 HOH A 128 1128 2150 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               3.46 
_atom_site.Cartn_y               19.158 
_atom_site.Cartn_z               3.865 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        66.11 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#