data_4J1H # _model_server_result.job_id VZZxEpuy5oD1t56GWCkSgg _model_server_result.datetime_utc '2024-11-28 18:56:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j1h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 4J1H # _exptl.entry_id 4J1H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 421.348 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{3-[(4S,6R)-2-amino-4-methyl-6-(trifluoromethyl)-5,6-dihydro-4H-1,3-oxazin-4-yl]-4-fluorophenyl}-5-cyanopyridine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4J1H _cell.length_a 102.685 _cell.length_b 102.685 _cell.length_c 168.873 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J1H _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 171 A CYS 216 1_555 A SG CYS 375 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? disulf ? disulf2 A SG CYS 233 A CYS 278 1_555 A SG CYS 398 A CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? disulf ? disulf3 A SG CYS 285 A CYS 330 1_555 A SG CYS 335 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc1 A O VAL 157 A VAL 202 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc2 A O THR 160 A THR 205 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc3 A O HIS 197 A HIS 242 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc4 A O TYR 200 A TYR 245 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc5 B NA NA . A NA 501 1_555 F O HOH . A HOH 1064 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc6 C NA NA . A NA 502 1_555 F O HOH . A HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? # _chem_comp.formula 'C19 H15 F4 N5 O2' _chem_comp.formula_weight 421.348 _chem_comp.id 1HJ _chem_comp.mon_nstd_flag . _chem_comp.name N-{3-[(4S,6R)-2-amino-4-methyl-6-(trifluoromethyl)-5,6-dihydro-4H-1,3-oxazin-4-yl]-4-fluorophenyl}-5-cyanopyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F28 C27 1HJ sing 1 n n F13 C12 1HJ sing 2 n n C27 F29 1HJ sing 3 n n C27 F30 1HJ sing 4 n n C27 C1 1HJ sing 5 n n C2 C1 1HJ sing 6 n n C2 C6 1HJ sing 7 n n C1 O3 1HJ sing 8 n n C15 C6 1HJ sing 9 n n C12 C11 1HJ doub 10 n y C12 C7 1HJ sing 11 n y C11 C10 1HJ sing 12 n y C6 C7 1HJ sing 13 n n C6 N5 1HJ sing 14 n n C7 C8 1HJ doub 15 n y O3 C4 1HJ sing 16 n n C10 C9 1HJ doub 17 n y N5 C4 1HJ doub 18 n n C4 N14 1HJ sing 19 n n C8 C9 1HJ sing 20 n y C9 N16 1HJ sing 21 n n O19 C17 1HJ doub 22 n n N16 C17 1HJ sing 23 n n C17 C18 1HJ sing 24 n n C18 C24 1HJ doub 25 n y C18 N20 1HJ sing 26 n y C24 C23 1HJ sing 27 n y N20 C21 1HJ doub 28 n y C23 C22 1HJ doub 29 n y C21 C22 1HJ sing 30 n y C22 C25 1HJ sing 31 n n C25 N26 1HJ trip 32 n n C1 H1 1HJ sing 33 n n C2 H2 1HJ sing 34 n n C2 H3 1HJ sing 35 n n C8 H4 1HJ sing 36 n n C10 H5 1HJ sing 37 n n C11 H6 1HJ sing 38 n n N14 H7 1HJ sing 39 n n N14 H8 1HJ sing 40 n n C15 H9 1HJ sing 41 n n C15 H10 1HJ sing 42 n n C15 H11 1HJ sing 43 n n N16 H12 1HJ sing 44 n n C21 H13 1HJ sing 45 n n C23 H14 1HJ sing 46 n n C24 H15 1HJ sing 47 n n # _atom_sites.entry_id 4J1H _atom_sites.fract_transf_matrix[1][1] 0.009739 _atom_sites.fract_transf_matrix[1][2] 0.005623 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 1 NA NA . C 2 NA A 1 502 1 NA NA . D 3 DMS A 1 503 1 DMS DMS . E 4 1HJ A 1 504 1 1HJ 176 . F 5 HOH A 1 1001 1001 HOH HOH . F 5 HOH A 2 1002 1002 HOH HOH . F 5 HOH A 3 1003 1003 HOH HOH . F 5 HOH A 4 1004 1004 HOH HOH . F 5 HOH A 5 1005 1005 HOH HOH . F 5 HOH A 6 1006 1006 HOH HOH . F 5 HOH A 7 1007 1007 HOH HOH . F 5 HOH A 8 1008 1008 HOH HOH . F 5 HOH A 9 1009 1009 HOH HOH . F 5 HOH A 10 1010 1010 HOH HOH . F 5 HOH A 11 1011 1011 HOH HOH . F 5 HOH A 12 1012 1012 HOH HOH . F 5 HOH A 13 1013 1013 HOH HOH . F 5 HOH A 14 1014 1014 HOH HOH . F 5 HOH A 15 1015 1015 HOH HOH . F 5 HOH A 16 1016 1016 HOH HOH . F 5 HOH A 17 1017 1017 HOH HOH . F 5 HOH A 18 1018 1018 HOH HOH . F 5 HOH A 19 1019 1019 HOH HOH . F 5 HOH A 20 1020 1020 HOH HOH . F 5 HOH A 21 1021 1021 HOH HOH . F 5 HOH A 22 1022 1022 HOH HOH . F 5 HOH A 23 1023 1023 HOH HOH . F 5 HOH A 24 1024 1025 HOH HOH . F 5 HOH A 25 1025 1026 HOH HOH . F 5 HOH A 26 1026 1027 HOH HOH . F 5 HOH A 27 1027 1028 HOH HOH . F 5 HOH A 28 1028 1029 HOH HOH . F 5 HOH A 29 1029 1030 HOH HOH . F 5 HOH A 30 1030 1031 HOH HOH . F 5 HOH A 31 1031 1032 HOH HOH . F 5 HOH A 32 1032 1033 HOH HOH . F 5 HOH A 33 1033 1034 HOH HOH . F 5 HOH A 34 1034 1035 HOH HOH . F 5 HOH A 35 1035 1036 HOH HOH . F 5 HOH A 36 1036 1037 HOH HOH . F 5 HOH A 37 1037 1038 HOH HOH . F 5 HOH A 38 1038 1039 HOH HOH . F 5 HOH A 39 1039 1040 HOH HOH . F 5 HOH A 40 1040 1041 HOH HOH . F 5 HOH A 41 1041 1042 HOH HOH . F 5 HOH A 42 1042 1043 HOH HOH . F 5 HOH A 43 1043 1044 HOH HOH . F 5 HOH A 44 1044 1045 HOH HOH . F 5 HOH A 45 1045 1046 HOH HOH . F 5 HOH A 46 1046 1047 HOH HOH . F 5 HOH A 47 1047 1048 HOH HOH . F 5 HOH A 48 1048 1049 HOH HOH . F 5 HOH A 49 1049 1050 HOH HOH . F 5 HOH A 50 1050 1051 HOH HOH . F 5 HOH A 51 1051 1052 HOH HOH . F 5 HOH A 52 1052 1053 HOH HOH . F 5 HOH A 53 1053 1055 HOH HOH . F 5 HOH A 54 1054 1056 HOH HOH . F 5 HOH A 55 1055 1057 HOH HOH . F 5 HOH A 56 1056 1058 HOH HOH . F 5 HOH A 57 1057 1061 HOH HOH . F 5 HOH A 58 1058 1062 HOH HOH . F 5 HOH A 59 1059 1063 HOH HOH . F 5 HOH A 60 1060 1064 HOH HOH . F 5 HOH A 61 1061 1065 HOH HOH . F 5 HOH A 62 1062 1066 HOH HOH . F 5 HOH A 63 1063 1067 HOH HOH . F 5 HOH A 64 1064 1068 HOH HOH . F 5 HOH A 65 1065 1069 HOH HOH . F 5 HOH A 66 1066 1070 HOH HOH . F 5 HOH A 67 1067 1073 HOH HOH . F 5 HOH A 68 1068 1074 HOH HOH . F 5 HOH A 69 1069 1078 HOH HOH . F 5 HOH A 70 1070 1080 HOH HOH . F 5 HOH A 71 1071 1081 HOH HOH . F 5 HOH A 72 1072 1082 HOH HOH . F 5 HOH A 73 1073 1083 HOH HOH . F 5 HOH A 74 1074 1084 HOH HOH . F 5 HOH A 75 1075 1085 HOH HOH . F 5 HOH A 76 1076 1086 HOH HOH . F 5 HOH A 77 1077 1087 HOH HOH . F 5 HOH A 78 1078 1088 HOH HOH . F 5 HOH A 79 1079 1091 HOH HOH . F 5 HOH A 80 1080 1092 HOH HOH . F 5 HOH A 81 1081 1093 HOH HOH . F 5 HOH A 82 1082 1094 HOH HOH . F 5 HOH A 83 1083 1095 HOH HOH . F 5 HOH A 84 1084 1096 HOH HOH . F 5 HOH A 85 1085 1099 HOH HOH . F 5 HOH A 86 1086 1101 HOH HOH . F 5 HOH A 87 1087 1102 HOH HOH . F 5 HOH A 88 1088 1107 HOH HOH . F 5 HOH A 89 1089 1108 HOH HOH . F 5 HOH A 90 1090 1112 HOH HOH . F 5 HOH A 91 1091 1113 HOH HOH . F 5 HOH A 92 1092 1115 HOH HOH . F 5 HOH A 93 1093 1117 HOH HOH . F 5 HOH A 94 1094 1119 HOH HOH . F 5 HOH A 95 1095 1120 HOH HOH . F 5 HOH A 96 1096 1121 HOH HOH . F 5 HOH A 97 1097 1122 HOH HOH . F 5 HOH A 98 1098 2091 HOH HOH . F 5 HOH A 99 1099 2092 HOH HOH . F 5 HOH A 100 1100 2093 HOH HOH . F 5 HOH A 101 1101 2094 HOH HOH . F 5 HOH A 102 1102 2095 HOH HOH . F 5 HOH A 103 1103 2096 HOH HOH . F 5 HOH A 104 1104 2098 HOH HOH . F 5 HOH A 105 1105 2101 HOH HOH . F 5 HOH A 106 1106 2102 HOH HOH . F 5 HOH A 107 1107 2103 HOH HOH . F 5 HOH A 108 1108 2104 HOH HOH . F 5 HOH A 109 1109 2106 HOH HOH . F 5 HOH A 110 1110 2107 HOH HOH . F 5 HOH A 111 1111 2109 HOH HOH . F 5 HOH A 112 1112 2110 HOH HOH . F 5 HOH A 113 1113 2111 HOH HOH . F 5 HOH A 114 1114 2120 HOH HOH . F 5 HOH A 115 1115 2121 HOH HOH . F 5 HOH A 116 1116 2123 HOH HOH . F 5 HOH A 117 1117 2124 HOH HOH . F 5 HOH A 118 1118 2128 HOH HOH . F 5 HOH A 119 1119 2129 HOH HOH . F 5 HOH A 120 1120 2131 HOH HOH . F 5 HOH A 121 1121 2132 HOH HOH . F 5 HOH A 122 1122 2135 HOH HOH . F 5 HOH A 123 1123 2138 HOH HOH . F 5 HOH A 124 1124 2140 HOH HOH . F 5 HOH A 125 1125 2142 HOH HOH . F 5 HOH A 126 1126 2144 HOH HOH . F 5 HOH A 127 1127 2145 HOH HOH . F 5 HOH A 128 1128 2150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 1HJ . . . E 4 14.652 40.989 -9.798 1 39.28 ? C1 1HJ 504 A 1 HETATM 2 C C2 1HJ . . . E 4 16.03 40.354 -9.992 1 34.5 ? C2 1HJ 504 A 1 HETATM 3 O O3 1HJ . . . E 4 14.546 41.395 -8.41 1 31.7 ? O3 1HJ 504 A 1 HETATM 4 C C4 1HJ . . . E 4 14.681 40.391 -7.562 1 32.41 ? C4 1HJ 504 A 1 HETATM 5 N N5 1HJ . . . E 4 15.458 39.383 -7.773 1 31.24 ? N5 1HJ 504 A 1 HETATM 6 C C6 1HJ . . . E 4 16.263 39.209 -8.967 1 33.99 ? C6 1HJ 504 A 1 HETATM 7 C C7 1HJ . . . E 4 17.68 39.392 -8.539 1 32.74 ? C7 1HJ 504 A 1 HETATM 8 C C8 1HJ . . . E 4 17.956 39.951 -7.319 1 30.63 ? C8 1HJ 504 A 1 HETATM 9 C C9 1HJ . . . E 4 19.297 40.126 -6.978 1 34.29 ? C9 1HJ 504 A 1 HETATM 10 C C10 1HJ . . . E 4 20.362 39.859 -7.86 1 38.56 ? C10 1HJ 504 A 1 HETATM 11 C C11 1HJ . . . E 4 20.053 39.316 -9.086 1 42.24 ? C11 1HJ 504 A 1 HETATM 12 C C12 1HJ . . . E 4 18.732 39.101 -9.421 1 38.59 ? C12 1HJ 504 A 1 HETATM 13 F F13 1HJ . . . E 4 18.5 38.574 -10.632 1 41.23 ? F13 1HJ 504 A 1 HETATM 14 N N14 1HJ . . . E 4 13.96 40.461 -6.395 1 29.06 ? N14 1HJ 504 A 1 HETATM 15 C C15 1HJ . . . E 4 15.951 37.857 -9.651 1 29.49 ? C15 1HJ 504 A 1 HETATM 16 N N16 1HJ . . . E 4 19.575 40.73 -5.78 1 35.45 ? N16 1HJ 504 A 1 HETATM 17 C C17 1HJ . . . E 4 20.754 41.273 -5.4 1 32.81 ? C17 1HJ 504 A 1 HETATM 18 C C18 1HJ . . . E 4 20.71 41.984 -4.11 1 31.35 ? C18 1HJ 504 A 1 HETATM 19 O O19 1HJ . . . E 4 21.774 41.257 -6.081 1 37.23 ? O19 1HJ 504 A 1 HETATM 20 N N20 1HJ . . . E 4 19.659 41.776 -3.321 1 29.61 ? N20 1HJ 504 A 1 HETATM 21 C C21 1HJ . . . E 4 19.504 42.396 -2.169 1 30.54 ? C21 1HJ 504 A 1 HETATM 22 C C22 1HJ . . . E 4 20.45 43.338 -1.779 1 32.98 ? C22 1HJ 504 A 1 HETATM 23 C C23 1HJ . . . E 4 21.595 43.637 -2.595 1 32.7 ? C23 1HJ 504 A 1 HETATM 24 C C24 1HJ . . . E 4 21.717 42.925 -3.796 1 32.81 ? C24 1HJ 504 A 1 HETATM 25 C C25 1HJ . . . E 4 20.259 43.98 -0.522 1 34.45 ? C25 1HJ 504 A 1 HETATM 26 N N26 1HJ . . . E 4 20.086 44.479 0.474 1 34.59 ? N26 1HJ 504 A 1 HETATM 27 C C27 1HJ . . . E 4 14.627 42.298 -10.594 1 46.33 ? C27 1HJ 504 A 1 HETATM 28 F F28 1HJ . . . E 4 14.715 41.973 -11.938 1 49.41 ? F28 1HJ 504 A 1 HETATM 29 F F29 1HJ . . . E 4 13.345 42.836 -10.422 1 42.02 ? F29 1HJ 504 A 1 HETATM 30 F F30 1HJ . . . E 4 15.682 43.202 -10.192 1 47.74 ? F30 1HJ 504 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #