data_4J1I # _model_server_result.job_id lK2e30MBBRFXhrWpMg70EQ _model_server_result.datetime_utc '2024-12-17 10:58:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4J1I # _exptl.entry_id 4J1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4J1I _cell.length_a 102.781 _cell.length_b 102.781 _cell.length_c 169.04 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 171 A CYS 216 1_555 A SG CYS 375 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? disulf ? disulf2 A SG CYS 233 A CYS 278 1_555 A SG CYS 398 A CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf3 A SG CYS 285 A CYS 330 1_555 A SG CYS 335 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc1 A O VAL 157 A VAL 202 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc2 A O THR 160 A THR 205 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc3 A O HIS 197 A HIS 242 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc4 A O TYR 200 A TYR 245 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc5 B NA NA . A NA 501 1_555 F O HOH . A HOH 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc6 B NA NA . A NA 501 1_555 F O HOH . A HOH 1134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc7 C NA NA . A NA 502 1_555 F O HOH . A HOH 1088 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc8 C NA NA . A NA 502 1_555 F O HOH . A HOH 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 130 n n S C1 DMS sing 131 n n S C2 DMS sing 132 n n C1 H11 DMS sing 133 n n C1 H12 DMS sing 134 n n C1 H13 DMS sing 135 n n C2 H21 DMS sing 136 n n C2 H22 DMS sing 137 n n C2 H23 DMS sing 138 n n # _atom_sites.entry_id 4J1I _atom_sites.fract_transf_matrix[1][1] 0.009729 _atom_sites.fract_transf_matrix[1][2] 0.005617 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 1 NA NA . C 2 NA A 1 502 1 NA NA . D 3 DMS A 1 503 1 DMS DMS . E 4 1HH A 1 504 1 1HH 321 . F 5 HOH A 1 1001 1001 HOH HOH . F 5 HOH A 2 1002 1002 HOH HOH . F 5 HOH A 3 1003 1003 HOH HOH . F 5 HOH A 4 1004 1004 HOH HOH . F 5 HOH A 5 1005 1005 HOH HOH . F 5 HOH A 6 1006 1006 HOH HOH . F 5 HOH A 7 1007 1007 HOH HOH . F 5 HOH A 8 1008 1008 HOH HOH . F 5 HOH A 9 1009 1009 HOH HOH . F 5 HOH A 10 1010 1010 HOH HOH . F 5 HOH A 11 1011 1011 HOH HOH . F 5 HOH A 12 1012 1012 HOH HOH . F 5 HOH A 13 1013 1013 HOH HOH . F 5 HOH A 14 1014 1015 HOH HOH . F 5 HOH A 15 1015 1016 HOH HOH . F 5 HOH A 16 1016 1017 HOH HOH . F 5 HOH A 17 1017 1018 HOH HOH . F 5 HOH A 18 1018 1019 HOH HOH . F 5 HOH A 19 1019 1020 HOH HOH . F 5 HOH A 20 1020 1021 HOH HOH . F 5 HOH A 21 1021 1022 HOH HOH . F 5 HOH A 22 1022 1023 HOH HOH . F 5 HOH A 23 1023 1024 HOH HOH . F 5 HOH A 24 1024 1025 HOH HOH . F 5 HOH A 25 1025 1026 HOH HOH . F 5 HOH A 26 1026 1027 HOH HOH . F 5 HOH A 27 1027 1028 HOH HOH . F 5 HOH A 28 1028 1029 HOH HOH . F 5 HOH A 29 1029 1030 HOH HOH . F 5 HOH A 30 1030 1031 HOH HOH . F 5 HOH A 31 1031 1032 HOH HOH . F 5 HOH A 32 1032 1033 HOH HOH . F 5 HOH A 33 1033 1034 HOH HOH . F 5 HOH A 34 1034 1035 HOH HOH . F 5 HOH A 35 1035 1036 HOH HOH . F 5 HOH A 36 1036 1037 HOH HOH . F 5 HOH A 37 1037 1038 HOH HOH . F 5 HOH A 38 1038 1039 HOH HOH . F 5 HOH A 39 1039 1040 HOH HOH . F 5 HOH A 40 1040 1041 HOH HOH . F 5 HOH A 41 1041 1042 HOH HOH . F 5 HOH A 42 1042 1043 HOH HOH . F 5 HOH A 43 1043 1044 HOH HOH . F 5 HOH A 44 1044 1045 HOH HOH . F 5 HOH A 45 1045 1046 HOH HOH . F 5 HOH A 46 1046 1047 HOH HOH . F 5 HOH A 47 1047 1048 HOH HOH . F 5 HOH A 48 1048 1050 HOH HOH . F 5 HOH A 49 1049 1051 HOH HOH . F 5 HOH A 50 1050 1053 HOH HOH . F 5 HOH A 51 1051 1054 HOH HOH . F 5 HOH A 52 1052 1055 HOH HOH . F 5 HOH A 53 1053 1056 HOH HOH . F 5 HOH A 54 1054 1057 HOH HOH . F 5 HOH A 55 1055 1058 HOH HOH . F 5 HOH A 56 1056 1059 HOH HOH . F 5 HOH A 57 1057 1060 HOH HOH . F 5 HOH A 58 1058 1061 HOH HOH . F 5 HOH A 59 1059 1062 HOH HOH . F 5 HOH A 60 1060 1063 HOH HOH . F 5 HOH A 61 1061 1064 HOH HOH . F 5 HOH A 62 1062 1065 HOH HOH . F 5 HOH A 63 1063 1066 HOH HOH . F 5 HOH A 64 1064 1067 HOH HOH . F 5 HOH A 65 1065 1068 HOH HOH . F 5 HOH A 66 1066 1069 HOH HOH . F 5 HOH A 67 1067 1070 HOH HOH . F 5 HOH A 68 1068 1071 HOH HOH . F 5 HOH A 69 1069 1072 HOH HOH . F 5 HOH A 70 1070 1073 HOH HOH . F 5 HOH A 71 1071 1074 HOH HOH . F 5 HOH A 72 1072 1075 HOH HOH . F 5 HOH A 73 1073 1077 HOH HOH . F 5 HOH A 74 1074 1080 HOH HOH . F 5 HOH A 75 1075 1081 HOH HOH . F 5 HOH A 76 1076 1083 HOH HOH . F 5 HOH A 77 1077 1084 HOH HOH . F 5 HOH A 78 1078 1085 HOH HOH . F 5 HOH A 79 1079 1086 HOH HOH . F 5 HOH A 80 1080 1087 HOH HOH . F 5 HOH A 81 1081 1088 HOH HOH . F 5 HOH A 82 1082 1089 HOH HOH . F 5 HOH A 83 1083 1090 HOH HOH . F 5 HOH A 84 1084 1091 HOH HOH . F 5 HOH A 85 1085 1092 HOH HOH . F 5 HOH A 86 1086 1093 HOH HOH . F 5 HOH A 87 1087 1094 HOH HOH . F 5 HOH A 88 1088 1095 HOH HOH . F 5 HOH A 89 1089 1096 HOH HOH . F 5 HOH A 90 1090 1099 HOH HOH . F 5 HOH A 91 1091 1100 HOH HOH . F 5 HOH A 92 1092 1102 HOH HOH . F 5 HOH A 93 1093 1103 HOH HOH . F 5 HOH A 94 1094 1104 HOH HOH . F 5 HOH A 95 1095 1105 HOH HOH . F 5 HOH A 96 1096 1106 HOH HOH . F 5 HOH A 97 1097 1107 HOH HOH . F 5 HOH A 98 1098 1108 HOH HOH . F 5 HOH A 99 1099 1109 HOH HOH . F 5 HOH A 100 1100 1110 HOH HOH . F 5 HOH A 101 1101 1111 HOH HOH . F 5 HOH A 102 1102 1113 HOH HOH . F 5 HOH A 103 1103 1114 HOH HOH . F 5 HOH A 104 1104 1115 HOH HOH . F 5 HOH A 105 1105 1116 HOH HOH . F 5 HOH A 106 1106 1117 HOH HOH . F 5 HOH A 107 1107 1120 HOH HOH . F 5 HOH A 108 1108 1121 HOH HOH . F 5 HOH A 109 1109 1123 HOH HOH . F 5 HOH A 110 1110 1130 HOH HOH . F 5 HOH A 111 1111 1134 HOH HOH . F 5 HOH A 112 1112 1138 HOH HOH . F 5 HOH A 113 1113 1139 HOH HOH . F 5 HOH A 114 1114 1142 HOH HOH . F 5 HOH A 115 1115 1143 HOH HOH . F 5 HOH A 116 1116 1147 HOH HOH . F 5 HOH A 117 1117 1148 HOH HOH . F 5 HOH A 118 1118 1155 HOH HOH . F 5 HOH A 119 1119 1158 HOH HOH . F 5 HOH A 120 1120 1164 HOH HOH . F 5 HOH A 121 1121 1165 HOH HOH . F 5 HOH A 122 1122 1166 HOH HOH . F 5 HOH A 123 1123 1167 HOH HOH . F 5 HOH A 124 1124 1178 HOH HOH . F 5 HOH A 125 1125 1185 HOH HOH . F 5 HOH A 126 1126 1192 HOH HOH . F 5 HOH A 127 1127 1194 HOH HOH . F 5 HOH A 128 1128 1198 HOH HOH . F 5 HOH A 129 1129 1200 HOH HOH . F 5 HOH A 130 1130 1202 HOH HOH . F 5 HOH A 131 1131 1205 HOH HOH . F 5 HOH A 132 1132 1210 HOH HOH . F 5 HOH A 133 1133 1211 HOH HOH . F 5 HOH A 134 1134 1214 HOH HOH . F 5 HOH A 135 1135 1217 HOH HOH . F 5 HOH A 136 1136 2131 HOH HOH . F 5 HOH A 137 1137 2132 HOH HOH . F 5 HOH A 138 1138 2135 HOH HOH . F 5 HOH A 139 1139 2136 HOH HOH . F 5 HOH A 140 1140 2137 HOH HOH . F 5 HOH A 141 1141 2138 HOH HOH . F 5 HOH A 142 1142 2140 HOH HOH . F 5 HOH A 143 1143 2141 HOH HOH . F 5 HOH A 144 1144 2142 HOH HOH . F 5 HOH A 145 1145 2143 HOH HOH . F 5 HOH A 146 1146 2145 HOH HOH . F 5 HOH A 147 1147 2146 HOH HOH . F 5 HOH A 148 1148 2147 HOH HOH . F 5 HOH A 149 1149 2148 HOH HOH . F 5 HOH A 150 1150 2149 HOH HOH . F 5 HOH A 151 1151 2150 HOH HOH . F 5 HOH A 152 1152 2151 HOH HOH . F 5 HOH A 153 1153 2153 HOH HOH . F 5 HOH A 154 1154 2155 HOH HOH . F 5 HOH A 155 1155 2157 HOH HOH . F 5 HOH A 156 1156 2160 HOH HOH . F 5 HOH A 157 1157 2163 HOH HOH . F 5 HOH A 158 1158 2164 HOH HOH . F 5 HOH A 159 1159 2168 HOH HOH . F 5 HOH A 160 1160 2169 HOH HOH . F 5 HOH A 161 1161 2170 HOH HOH . F 5 HOH A 162 1162 2172 HOH HOH . F 5 HOH A 163 1163 2173 HOH HOH . F 5 HOH A 164 1164 2174 HOH HOH . F 5 HOH A 165 1165 2175 HOH HOH . F 5 HOH A 166 1166 2176 HOH HOH . F 5 HOH A 167 1167 2177 HOH HOH . F 5 HOH A 168 1168 2179 HOH HOH . F 5 HOH A 169 1169 2183 HOH HOH . F 5 HOH A 170 1170 2184 HOH HOH . F 5 HOH A 171 1171 2190 HOH HOH . F 5 HOH A 172 1172 2192 HOH HOH . F 5 HOH A 173 1173 2193 HOH HOH . F 5 HOH A 174 1174 2199 HOH HOH . F 5 HOH A 175 1175 2200 HOH HOH . F 5 HOH A 176 1176 2201 HOH HOH . F 5 HOH A 177 1177 2203 HOH HOH . F 5 HOH A 178 1178 2205 HOH HOH . F 5 HOH A 179 1179 2206 HOH HOH . F 5 HOH A 180 1180 2213 HOH HOH . F 5 HOH A 181 1181 2223 HOH HOH . F 5 HOH A 182 1182 2233 HOH HOH . F 5 HOH A 183 1183 2236 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 10.032 -18.081 7.262 1 72.08 ? S DMS 503 A 1 HETATM 2 O O DMS . . . D 3 11.047 -18.932 7.908 1 70.55 ? O DMS 503 A 1 HETATM 3 C C1 DMS . . . D 3 8.646 -18.046 8.266 1 72.8 ? C1 DMS 503 A 1 HETATM 4 C C2 DMS . . . D 3 10.497 -16.439 7.28 1 70.23 ? C2 DMS 503 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #