data_4J1K # _model_server_result.job_id ToGFmzKkXzbcjYN_8Mp8-Q _model_server_result.datetime_utc '2024-11-25 02:41:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4J1K # _exptl.entry_id 4J1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4J1K _cell.length_a 102.873 _cell.length_b 102.873 _cell.length_c 169.209 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 171 A CYS 216 1_555 A SG CYS 375 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? disulf ? disulf2 A SG CYS 233 A CYS 278 1_555 A SG CYS 398 A CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? disulf ? disulf3 A SG CYS 285 A CYS 330 1_555 A SG CYS 335 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc1 A O THR 160 A THR 205 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc2 C NA NA . A NA 502 1_555 F O HOH . A HOH 1091 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc3 A O VAL 157 A VAL 202 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc4 A O HIS 197 A HIS 242 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc5 C NA NA . A NA 502 1_555 F O HOH . A HOH 1117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc6 A O TYR 200 A TYR 245 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc7 B NA NA . A NA 501 1_555 F O HOH . A HOH 1061 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4J1K _atom_sites.fract_transf_matrix[1][1] 0.009721 _atom_sites.fract_transf_matrix[1][2] 0.005612 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00591 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 1 NA NA . C 2 NA A 1 502 1 NA NA . D 3 DMS A 1 503 1 DMS DMS . E 4 1HG A 1 504 1 1HG 226 . F 5 HOH A 1 1001 1001 HOH HOH . F 5 HOH A 2 1002 1002 HOH HOH . F 5 HOH A 3 1003 1003 HOH HOH . F 5 HOH A 4 1004 1005 HOH HOH . F 5 HOH A 5 1005 1006 HOH HOH . F 5 HOH A 6 1006 1007 HOH HOH . F 5 HOH A 7 1007 1008 HOH HOH . F 5 HOH A 8 1008 1009 HOH HOH . F 5 HOH A 9 1009 1010 HOH HOH . F 5 HOH A 10 1010 1011 HOH HOH . F 5 HOH A 11 1011 1012 HOH HOH . F 5 HOH A 12 1012 1013 HOH HOH . F 5 HOH A 13 1013 1014 HOH HOH . F 5 HOH A 14 1014 1015 HOH HOH . F 5 HOH A 15 1015 1016 HOH HOH . F 5 HOH A 16 1016 1017 HOH HOH . F 5 HOH A 17 1017 1018 HOH HOH . F 5 HOH A 18 1018 1019 HOH HOH . F 5 HOH A 19 1019 1020 HOH HOH . F 5 HOH A 20 1020 1021 HOH HOH . F 5 HOH A 21 1021 1022 HOH HOH . F 5 HOH A 22 1022 1023 HOH HOH . F 5 HOH A 23 1023 1024 HOH HOH . F 5 HOH A 24 1024 1025 HOH HOH . F 5 HOH A 25 1025 1026 HOH HOH . F 5 HOH A 26 1026 1027 HOH HOH . F 5 HOH A 27 1027 1028 HOH HOH . F 5 HOH A 28 1028 1029 HOH HOH . F 5 HOH A 29 1029 1030 HOH HOH . F 5 HOH A 30 1030 1031 HOH HOH . F 5 HOH A 31 1031 1032 HOH HOH . F 5 HOH A 32 1032 1033 HOH HOH . F 5 HOH A 33 1033 1034 HOH HOH . F 5 HOH A 34 1034 1035 HOH HOH . F 5 HOH A 35 1035 1036 HOH HOH . F 5 HOH A 36 1036 1037 HOH HOH . F 5 HOH A 37 1037 1038 HOH HOH . F 5 HOH A 38 1038 1040 HOH HOH . F 5 HOH A 39 1039 1041 HOH HOH . F 5 HOH A 40 1040 1042 HOH HOH . F 5 HOH A 41 1041 1044 HOH HOH . F 5 HOH A 42 1042 1045 HOH HOH . F 5 HOH A 43 1043 1046 HOH HOH . F 5 HOH A 44 1044 1047 HOH HOH . F 5 HOH A 45 1045 1048 HOH HOH . F 5 HOH A 46 1046 1049 HOH HOH . F 5 HOH A 47 1047 1050 HOH HOH . F 5 HOH A 48 1048 1051 HOH HOH . F 5 HOH A 49 1049 1052 HOH HOH . F 5 HOH A 50 1050 1053 HOH HOH . F 5 HOH A 51 1051 1054 HOH HOH . F 5 HOH A 52 1052 1056 HOH HOH . F 5 HOH A 53 1053 1057 HOH HOH . F 5 HOH A 54 1054 1058 HOH HOH . F 5 HOH A 55 1055 1059 HOH HOH . F 5 HOH A 56 1056 1060 HOH HOH . F 5 HOH A 57 1057 1061 HOH HOH . F 5 HOH A 58 1058 1062 HOH HOH . F 5 HOH A 59 1059 1063 HOH HOH . F 5 HOH A 60 1060 1065 HOH HOH . F 5 HOH A 61 1061 1068 HOH HOH . F 5 HOH A 62 1062 1069 HOH HOH . F 5 HOH A 63 1063 1070 HOH HOH . F 5 HOH A 64 1064 1072 HOH HOH . F 5 HOH A 65 1065 1073 HOH HOH . F 5 HOH A 66 1066 1074 HOH HOH . F 5 HOH A 67 1067 1075 HOH HOH . F 5 HOH A 68 1068 1076 HOH HOH . F 5 HOH A 69 1069 1077 HOH HOH . F 5 HOH A 70 1070 1078 HOH HOH . F 5 HOH A 71 1071 1079 HOH HOH . F 5 HOH A 72 1072 1080 HOH HOH . F 5 HOH A 73 1073 1081 HOH HOH . F 5 HOH A 74 1074 1082 HOH HOH . F 5 HOH A 75 1075 1083 HOH HOH . F 5 HOH A 76 1076 1084 HOH HOH . F 5 HOH A 77 1077 1086 HOH HOH . F 5 HOH A 78 1078 1088 HOH HOH . F 5 HOH A 79 1079 1090 HOH HOH . F 5 HOH A 80 1080 1092 HOH HOH . F 5 HOH A 81 1081 1093 HOH HOH . F 5 HOH A 82 1082 1094 HOH HOH . F 5 HOH A 83 1083 1095 HOH HOH . F 5 HOH A 84 1084 1096 HOH HOH . F 5 HOH A 85 1085 1098 HOH HOH . F 5 HOH A 86 1086 1102 HOH HOH . F 5 HOH A 87 1087 1106 HOH HOH . F 5 HOH A 88 1088 1110 HOH HOH . F 5 HOH A 89 1089 1111 HOH HOH . F 5 HOH A 90 1090 1115 HOH HOH . F 5 HOH A 91 1091 1118 HOH HOH . F 5 HOH A 92 1092 1119 HOH HOH . F 5 HOH A 93 1093 1120 HOH HOH . F 5 HOH A 94 1094 1123 HOH HOH . F 5 HOH A 95 1095 1130 HOH HOH . F 5 HOH A 96 1096 1131 HOH HOH . F 5 HOH A 97 1097 1132 HOH HOH . F 5 HOH A 98 1098 1136 HOH HOH . F 5 HOH A 99 1099 1139 HOH HOH . F 5 HOH A 100 1100 1140 HOH HOH . F 5 HOH A 101 1101 1143 HOH HOH . F 5 HOH A 102 1102 2092 HOH HOH . F 5 HOH A 103 1103 2093 HOH HOH . F 5 HOH A 104 1104 2094 HOH HOH . F 5 HOH A 105 1105 2095 HOH HOH . F 5 HOH A 106 1106 2096 HOH HOH . F 5 HOH A 107 1107 2097 HOH HOH . F 5 HOH A 108 1108 2099 HOH HOH . F 5 HOH A 109 1109 2100 HOH HOH . F 5 HOH A 110 1110 2101 HOH HOH . F 5 HOH A 111 1111 2102 HOH HOH . F 5 HOH A 112 1112 2104 HOH HOH . F 5 HOH A 113 1113 2105 HOH HOH . F 5 HOH A 114 1114 2106 HOH HOH . F 5 HOH A 115 1115 2110 HOH HOH . F 5 HOH A 116 1116 2111 HOH HOH . F 5 HOH A 117 1117 2113 HOH HOH . F 5 HOH A 118 1118 2114 HOH HOH . F 5 HOH A 119 1119 2119 HOH HOH . F 5 HOH A 120 1120 2121 HOH HOH . F 5 HOH A 121 1121 2123 HOH HOH . F 5 HOH A 122 1122 2124 HOH HOH . F 5 HOH A 123 1123 2125 HOH HOH . F 5 HOH A 124 1124 2127 HOH HOH . F 5 HOH A 125 1125 2129 HOH HOH . F 5 HOH A 126 1126 2130 HOH HOH . F 5 HOH A 127 1127 2131 HOH HOH . F 5 HOH A 128 1128 2132 HOH HOH . F 5 HOH A 129 1129 2134 HOH HOH . F 5 HOH A 130 1130 2135 HOH HOH . F 5 HOH A 131 1131 2136 HOH HOH . F 5 HOH A 132 1132 2137 HOH HOH . F 5 HOH A 133 1133 2139 HOH HOH . F 5 HOH A 134 1134 2140 HOH HOH . F 5 HOH A 135 1135 2141 HOH HOH . F 5 HOH A 136 1136 2142 HOH HOH . F 5 HOH A 137 1137 2148 HOH HOH . F 5 HOH A 138 1138 2151 HOH HOH . F 5 HOH A 139 1139 2154 HOH HOH . F 5 HOH A 140 1140 2156 HOH HOH . F 5 HOH A 141 1141 2157 HOH HOH . F 5 HOH A 142 1142 2160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 -9.929 -17.933 -7.443 1 75.87 ? S DMS 503 A 1 HETATM 2 O O DMS . . . D 3 -10.755 -19.03 -7.978 1 73.97 ? O DMS 503 A 1 HETATM 3 C C1 DMS . . . D 3 -8.412 -18.065 -8.232 1 81.99 ? C1 DMS 503 A 1 HETATM 4 C C2 DMS . . . D 3 -10.397 -16.409 -8.044 1 78.08 ? C2 DMS 503 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #