data_4J1N # _model_server_result.job_id iYAaT5UAnQKzKUNfoFwh7Q _model_server_result.datetime_utc '2025-07-10 03:35:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4J1N # _exptl.entry_id 4J1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J1N _cell.length_a 85.24 _cell.length_b 123.32 _cell.length_c 50.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 295 n n PA O2A NAD sing 296 n n PA O5B NAD sing 297 n n PA O3 NAD sing 298 n n O2A HOA2 NAD sing 299 n n O5B C5B NAD sing 300 n n C5B C4B NAD sing 301 n n C5B H51A NAD sing 302 n n C5B H52A NAD sing 303 n n C4B O4B NAD sing 304 n n C4B C3B NAD sing 305 n n C4B H4B NAD sing 306 n n O4B C1B NAD sing 307 n n C3B O3B NAD sing 308 n n C3B C2B NAD sing 309 n n C3B H3B NAD sing 310 n n O3B HO3A NAD sing 311 n n C2B O2B NAD sing 312 n n C2B C1B NAD sing 313 n n C2B H2B NAD sing 314 n n O2B HO2A NAD sing 315 n n C1B N9A NAD sing 316 n n C1B H1B NAD sing 317 n n N9A C8A NAD sing 318 n y N9A C4A NAD sing 319 n y C8A N7A NAD doub 320 n y C8A H8A NAD sing 321 n n N7A C5A NAD sing 322 n y C5A C6A NAD sing 323 n y C5A C4A NAD doub 324 n y C6A N6A NAD sing 325 n n C6A N1A NAD doub 326 n y N6A H61A NAD sing 327 n n N6A H62A NAD sing 328 n n N1A C2A NAD sing 329 n y C2A N3A NAD doub 330 n y C2A H2A NAD sing 331 n n N3A C4A NAD sing 332 n y O3 PN NAD sing 333 n n PN O1N NAD doub 334 n n PN O2N NAD sing 335 n n PN O5D NAD sing 336 n n O5D C5D NAD sing 337 n n C5D C4D NAD sing 338 n n C5D H51N NAD sing 339 n n C5D H52N NAD sing 340 n n C4D O4D NAD sing 341 n n C4D C3D NAD sing 342 n n C4D H4D NAD sing 343 n n O4D C1D NAD sing 344 n n C3D O3D NAD sing 345 n n C3D C2D NAD sing 346 n n C3D H3D NAD sing 347 n n O3D HO3N NAD sing 348 n n C2D O2D NAD sing 349 n n C2D C1D NAD sing 350 n n C2D H2D NAD sing 351 n n O2D HO2N NAD sing 352 n n C1D N1N NAD sing 353 n n C1D H1D NAD sing 354 n n N1N C2N NAD sing 355 n y N1N C6N NAD doub 356 n y C2N C3N NAD doub 357 n y C2N H2N NAD sing 358 n n C3N C7N NAD sing 359 n n C3N C4N NAD sing 360 n y C7N O7N NAD doub 361 n n C7N N7N NAD sing 362 n n N7N H71N NAD sing 363 n n N7N H72N NAD sing 364 n n C4N C5N NAD doub 365 n y C4N H4N NAD sing 366 n n C5N C6N NAD sing 367 n y C5N H5N NAD sing 368 n n C6N H6N NAD sing 369 n n # _atom_sites.entry_id 4J1N _atom_sites.fract_transf_matrix[1][1] 0.011732 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 301 1 NAD NAD . D 3 1JN A 1 302 1 1JN 1JN . E 4 GOL A 1 303 1 GOL GOL . F 2 NAD B 1 301 2 NAD NAD . G 3 1JN B 1 302 2 1JN 1JN . H 5 HOH A 1 401 1 HOH HOH . H 5 HOH A 2 402 2 HOH HOH . H 5 HOH A 3 403 3 HOH HOH . H 5 HOH A 4 404 5 HOH HOH . H 5 HOH A 5 405 8 HOH HOH . H 5 HOH A 6 406 11 HOH HOH . H 5 HOH A 7 407 18 HOH HOH . H 5 HOH A 8 408 19 HOH HOH . H 5 HOH A 9 409 20 HOH HOH . H 5 HOH A 10 410 21 HOH HOH . H 5 HOH A 11 411 22 HOH HOH . H 5 HOH A 12 412 26 HOH HOH . H 5 HOH A 13 413 30 HOH HOH . H 5 HOH A 14 414 31 HOH HOH . H 5 HOH A 15 415 35 HOH HOH . H 5 HOH A 16 416 38 HOH HOH . H 5 HOH A 17 417 39 HOH HOH . H 5 HOH A 18 418 43 HOH HOH . H 5 HOH A 19 419 44 HOH HOH . H 5 HOH A 20 420 46 HOH HOH . H 5 HOH A 21 421 63 HOH HOH . H 5 HOH A 22 422 64 HOH HOH . H 5 HOH A 23 423 65 HOH HOH . H 5 HOH A 24 424 66 HOH HOH . H 5 HOH A 25 425 67 HOH HOH . H 5 HOH A 26 426 68 HOH HOH . H 5 HOH A 27 427 71 HOH HOH . H 5 HOH A 28 428 73 HOH HOH . H 5 HOH A 29 429 75 HOH HOH . H 5 HOH A 30 430 76 HOH HOH . H 5 HOH A 31 431 77 HOH HOH . H 5 HOH A 32 432 78 HOH HOH . H 5 HOH A 33 433 79 HOH HOH . I 5 HOH B 1 401 4 HOH HOH . I 5 HOH B 2 402 6 HOH HOH . I 5 HOH B 3 403 9 HOH HOH . I 5 HOH B 4 404 10 HOH HOH . I 5 HOH B 5 405 12 HOH HOH . I 5 HOH B 6 406 14 HOH HOH . I 5 HOH B 7 407 15 HOH HOH . I 5 HOH B 8 408 17 HOH HOH . I 5 HOH B 9 409 24 HOH HOH . I 5 HOH B 10 410 25 HOH HOH . I 5 HOH B 11 411 27 HOH HOH . I 5 HOH B 12 412 28 HOH HOH . I 5 HOH B 13 413 29 HOH HOH . I 5 HOH B 14 414 33 HOH HOH . I 5 HOH B 15 415 34 HOH HOH . I 5 HOH B 16 416 40 HOH HOH . I 5 HOH B 17 417 41 HOH HOH . I 5 HOH B 18 418 42 HOH HOH . I 5 HOH B 19 419 45 HOH HOH . I 5 HOH B 20 420 48 HOH HOH . I 5 HOH B 21 421 52 HOH HOH . I 5 HOH B 22 422 58 HOH HOH . I 5 HOH B 23 423 59 HOH HOH . I 5 HOH B 24 424 61 HOH HOH . I 5 HOH B 25 425 62 HOH HOH . I 5 HOH B 26 426 69 HOH HOH . I 5 HOH B 27 427 72 HOH HOH . I 5 HOH B 28 428 74 HOH HOH . I 5 HOH B 29 429 80 HOH HOH . I 5 HOH B 30 430 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 24.467 -6.006 -16.805 1 56.46 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . C 2 24.456 -7.286 -17.582 1 54.59 ? O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . C 2 25.416 -4.951 -17.181 1 54.57 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . C 2 24.652 -6.283 -15.23 1 52.74 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . C 2 23.979 -7.411 -14.591 1 50.37 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . C 2 24.987 -7.88 -13.534 1 48.66 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . C 2 24.552 -9.114 -12.893 1 46.88 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . C 2 26.338 -8.194 -14.212 1 49.28 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . C 2 27.295 -7.166 -13.982 1 49.99 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . C 2 26.76 -9.543 -13.647 1 48.4 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . C 2 28.146 -9.384 -13.343 1 50.34 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . C 2 25.772 -9.71 -12.494 1 46.99 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . C 2 25.571 -11.118 -12.155 1 46.64 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . C 2 24.848 -12.08 -12.778 1 46.08 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . C 2 24.949 -13.25 -12.12 1 46.29 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . C 2 25.761 -12.945 -11.081 1 45.52 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . C 2 26.217 -13.806 -10.047 1 44.72 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . C 2 25.838 -15.06 -10.045 1 43.43 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . C 2 27.056 -13.285 -9.067 1 44.01 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . C 2 27.44 -11.965 -9.093 1 43.56 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . C 2 27.015 -11.133 -10.071 1 43.76 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . C 2 26.168 -11.619 -11.079 1 45.58 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . C 2 22.956 -5.418 -16.82 1 55.19 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . C 2 22.246 -4.207 -16.046 1 51.23 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . C 2 21.035 -3.91 -16.766 1 53.25 ? O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . C 2 23.244 -3.101 -15.861 1 51.22 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . C 2 21.763 -4.9 -14.686 1 50.27 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . C 2 22.031 -4.359 -13.399 1 47.19 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . C 2 20.835 -4.562 -12.508 1 44.08 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . C 2 19.853 -3.592 -12.883 1 43.48 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . C 2 20.043 -5.874 -12.526 1 42.46 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . C 2 19.563 -6.232 -11.198 1 41.19 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . C 2 18.85 -5.597 -13.421 1 43 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . C 2 17.72 -6.468 -13.268 1 42.76 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . C 2 18.535 -4.211 -13.072 1 43.31 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . C 2 17.66 -3.537 -14.049 1 41.8 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . C 2 17.985 -3.506 -15.474 1 41.7 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . C 2 17.111 -2.843 -16.391 1 41.99 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . C 2 17.328 -2.962 -17.921 1 43.9 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . C 2 16.386 -2.685 -18.669 1 45.38 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . C 2 18.511 -3.355 -18.434 1 43.82 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . C 2 15.939 -2.231 -15.859 1 42.47 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . C 2 15.624 -2.261 -14.477 1 42.07 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . C 2 16.47 -2.904 -13.576 1 41.51 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 44 #