data_4J1N # _model_server_result.job_id 9iNH2gMYXK6kQfxX6x-cxg _model_server_result.datetime_utc '2025-07-13 03:16:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":302}' # _entry.id 4J1N # _exptl.entry_id 4J1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.375 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-methoxy-3-methylbenzyl)-1,5,6,7-tetrahydroindeno[5,6-d]imidazole _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J1N _cell.length_a 85.24 _cell.length_b 123.32 _cell.length_c 50.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C19 H20 N2 O' _chem_comp.formula_weight 292.375 _chem_comp.id 1JN _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-methoxy-3-methylbenzyl)-1,5,6,7-tetrahydroindeno[5,6-d]imidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C3 1JN sing 1 n n O2 C1 1JN sing 2 n n C6 C5 1JN sing 3 n n C3 C5 1JN doub 4 n y C3 C4 1JN sing 5 n y C5 C7 1JN sing 6 n y C4 C8 1JN doub 7 n y C7 C9 1JN doub 8 n y C8 C9 1JN sing 9 n y C9 C22 1JN sing 10 n n C22 N21 1JN sing 11 n n C17 C19 1JN sing 12 n n C17 C15 1JN sing 13 n n C20 C19 1JN doub 14 n y C20 C13 1JN sing 15 n y C19 C18 1JN sing 16 n y N21 C13 1JN sing 17 n y N21 C12 1JN sing 18 n y C13 C10 1JN doub 19 n y C15 C16 1JN sing 20 n n C12 N11 1JN doub 21 n y C18 C16 1JN sing 22 n n C18 C14 1JN doub 23 n y C10 C14 1JN sing 24 n y C10 N11 1JN sing 25 n y C4 H1 1JN sing 26 n n C6 H2 1JN sing 27 n n C6 H3 1JN sing 28 n n C6 H4 1JN sing 29 n n C7 H5 1JN sing 30 n n C8 H6 1JN sing 31 n n C15 H7 1JN sing 32 n n C15 H8 1JN sing 33 n n C17 H9 1JN sing 34 n n C17 H10 1JN sing 35 n n C20 H11 1JN sing 36 n n C22 H12 1JN sing 37 n n C22 H13 1JN sing 38 n n C1 H14 1JN sing 39 n n C1 H15 1JN sing 40 n n C1 H16 1JN sing 41 n n C12 H17 1JN sing 42 n n C14 H18 1JN sing 43 n n C16 H19 1JN sing 44 n n C16 H20 1JN sing 45 n n # _atom_sites.entry_id 4J1N _atom_sites.fract_transf_matrix[1][1] 0.011732 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 301 1 NAD NAD . D 3 1JN A 1 302 1 1JN 1JN . E 4 GOL A 1 303 1 GOL GOL . F 2 NAD B 1 301 2 NAD NAD . G 3 1JN B 1 302 2 1JN 1JN . H 5 HOH A 1 401 1 HOH HOH . H 5 HOH A 2 402 2 HOH HOH . H 5 HOH A 3 403 3 HOH HOH . H 5 HOH A 4 404 5 HOH HOH . H 5 HOH A 5 405 8 HOH HOH . H 5 HOH A 6 406 11 HOH HOH . H 5 HOH A 7 407 18 HOH HOH . H 5 HOH A 8 408 19 HOH HOH . H 5 HOH A 9 409 20 HOH HOH . H 5 HOH A 10 410 21 HOH HOH . H 5 HOH A 11 411 22 HOH HOH . H 5 HOH A 12 412 26 HOH HOH . H 5 HOH A 13 413 30 HOH HOH . H 5 HOH A 14 414 31 HOH HOH . H 5 HOH A 15 415 35 HOH HOH . H 5 HOH A 16 416 38 HOH HOH . H 5 HOH A 17 417 39 HOH HOH . H 5 HOH A 18 418 43 HOH HOH . H 5 HOH A 19 419 44 HOH HOH . H 5 HOH A 20 420 46 HOH HOH . H 5 HOH A 21 421 63 HOH HOH . H 5 HOH A 22 422 64 HOH HOH . H 5 HOH A 23 423 65 HOH HOH . H 5 HOH A 24 424 66 HOH HOH . H 5 HOH A 25 425 67 HOH HOH . H 5 HOH A 26 426 68 HOH HOH . H 5 HOH A 27 427 71 HOH HOH . H 5 HOH A 28 428 73 HOH HOH . H 5 HOH A 29 429 75 HOH HOH . H 5 HOH A 30 430 76 HOH HOH . H 5 HOH A 31 431 77 HOH HOH . H 5 HOH A 32 432 78 HOH HOH . H 5 HOH A 33 433 79 HOH HOH . I 5 HOH B 1 401 4 HOH HOH . I 5 HOH B 2 402 6 HOH HOH . I 5 HOH B 3 403 9 HOH HOH . I 5 HOH B 4 404 10 HOH HOH . I 5 HOH B 5 405 12 HOH HOH . I 5 HOH B 6 406 14 HOH HOH . I 5 HOH B 7 407 15 HOH HOH . I 5 HOH B 8 408 17 HOH HOH . I 5 HOH B 9 409 24 HOH HOH . I 5 HOH B 10 410 25 HOH HOH . I 5 HOH B 11 411 27 HOH HOH . I 5 HOH B 12 412 28 HOH HOH . I 5 HOH B 13 413 29 HOH HOH . I 5 HOH B 14 414 33 HOH HOH . I 5 HOH B 15 415 34 HOH HOH . I 5 HOH B 16 416 40 HOH HOH . I 5 HOH B 17 417 41 HOH HOH . I 5 HOH B 18 418 42 HOH HOH . I 5 HOH B 19 419 45 HOH HOH . I 5 HOH B 20 420 48 HOH HOH . I 5 HOH B 21 421 52 HOH HOH . I 5 HOH B 22 422 58 HOH HOH . I 5 HOH B 23 423 59 HOH HOH . I 5 HOH B 24 424 61 HOH HOH . I 5 HOH B 25 425 62 HOH HOH . I 5 HOH B 26 426 69 HOH HOH . I 5 HOH B 27 427 72 HOH HOH . I 5 HOH B 28 428 74 HOH HOH . I 5 HOH B 29 429 80 HOH HOH . I 5 HOH B 30 430 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 1JN . . . G 3 -0.234 13.284 10.762 1 55.13 ? C4 1JN 302 B 1 HETATM 2 C C5 1JN . . . G 3 -2.349 14.388 11.201 1 58.13 ? C5 1JN 302 B 1 HETATM 3 C C6 1JN . . . G 3 -3.776 14.356 11.687 1 60.11 ? C6 1JN 302 B 1 HETATM 4 C C7 1JN . . . G 3 -1.78 15.573 10.744 1 57.05 ? C7 1JN 302 B 1 HETATM 5 C C8 1JN . . . G 3 0.299 14.483 10.317 1 55.13 ? C8 1JN 302 B 1 HETATM 6 C C10 1JN . . . G 3 -1.528 18.652 7.139 1 53.86 ? C10 1JN 302 B 1 HETATM 7 C C13 1JN . . . G 3 -1.365 18.483 8.515 1 54.43 ? C13 1JN 302 B 1 HETATM 8 C C15 1JN . . . G 3 -4.438 22.049 8.678 1 52.12 ? C15 1JN 302 B 1 HETATM 9 C C17 1JN . . . G 3 -3.961 21.041 9.723 1 54.31 ? C17 1JN 302 B 1 HETATM 10 C C20 1JN . . . G 3 -2.1 19.22 9.434 1 53.7 ? C20 1JN 302 B 1 HETATM 11 C C22 1JN . . . G 3 0.141 16.97 9.907 1 55.45 ? C22 1JN 302 B 1 HETATM 12 C C1 1JN . . . G 3 -1.484 10.873 11.546 1 54.73 ? C1 1JN 302 B 1 HETATM 13 O O2 1JN . . . G 3 -2.157 12.118 11.707 1 53.06 ? O2 1JN 302 B 1 HETATM 14 C C3 1JN . . . G 3 -1.554 13.242 11.209 1 56.11 ? C3 1JN 302 B 1 HETATM 15 C C9 1JN . . . G 3 -0.46 15.644 10.311 1 56.13 ? C9 1JN 302 B 1 HETATM 16 N N11 1JN . . . G 3 -0.689 17.782 6.446 1 53.76 ? N11 1JN 302 B 1 HETATM 17 C C12 1JN . . . G 3 -0.054 17.128 7.386 1 53.36 ? C12 1JN 302 B 1 HETATM 18 C C14 1JN . . . G 3 -2.444 19.592 6.66 1 53.09 ? C14 1JN 302 B 1 HETATM 19 C C16 1JN . . . G 3 -4.22 21.406 7.312 1 50.99 ? C16 1JN 302 B 1 HETATM 20 C C18 1JN . . . G 3 -3.187 20.339 7.577 1 52.89 ? C18 1JN 302 B 1 HETATM 21 C C19 1JN . . . G 3 -3.022 20.149 8.953 1 53.65 ? C19 1JN 302 B 1 HETATM 22 N N21 1JN . . . G 3 -0.402 17.493 8.65 1 55.03 ? N21 1JN 302 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #