data_4J1N # _model_server_result.job_id 6win5EWFqE-wfXs30MK5YQ _model_server_result.datetime_utc '2025-07-12 15:03:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 4J1N # _exptl.entry_id 4J1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J1N _cell.length_a 85.24 _cell.length_b 123.32 _cell.length_c 50.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 174 n n C1 C2 GOL sing 175 n n C1 H11 GOL sing 176 n n C1 H12 GOL sing 177 n n O1 HO1 GOL sing 178 n n C2 O2 GOL sing 179 n n C2 C3 GOL sing 180 n n C2 H2 GOL sing 181 n n O2 HO2 GOL sing 182 n n C3 O3 GOL sing 183 n n C3 H31 GOL sing 184 n n C3 H32 GOL sing 185 n n O3 HO3 GOL sing 186 n n # _atom_sites.entry_id 4J1N _atom_sites.fract_transf_matrix[1][1] 0.011732 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 301 1 NAD NAD . D 3 1JN A 1 302 1 1JN 1JN . E 4 GOL A 1 303 1 GOL GOL . F 2 NAD B 1 301 2 NAD NAD . G 3 1JN B 1 302 2 1JN 1JN . H 5 HOH A 1 401 1 HOH HOH . H 5 HOH A 2 402 2 HOH HOH . H 5 HOH A 3 403 3 HOH HOH . H 5 HOH A 4 404 5 HOH HOH . H 5 HOH A 5 405 8 HOH HOH . H 5 HOH A 6 406 11 HOH HOH . H 5 HOH A 7 407 18 HOH HOH . H 5 HOH A 8 408 19 HOH HOH . H 5 HOH A 9 409 20 HOH HOH . H 5 HOH A 10 410 21 HOH HOH . H 5 HOH A 11 411 22 HOH HOH . H 5 HOH A 12 412 26 HOH HOH . H 5 HOH A 13 413 30 HOH HOH . H 5 HOH A 14 414 31 HOH HOH . H 5 HOH A 15 415 35 HOH HOH . H 5 HOH A 16 416 38 HOH HOH . H 5 HOH A 17 417 39 HOH HOH . H 5 HOH A 18 418 43 HOH HOH . H 5 HOH A 19 419 44 HOH HOH . H 5 HOH A 20 420 46 HOH HOH . H 5 HOH A 21 421 63 HOH HOH . H 5 HOH A 22 422 64 HOH HOH . H 5 HOH A 23 423 65 HOH HOH . H 5 HOH A 24 424 66 HOH HOH . H 5 HOH A 25 425 67 HOH HOH . H 5 HOH A 26 426 68 HOH HOH . H 5 HOH A 27 427 71 HOH HOH . H 5 HOH A 28 428 73 HOH HOH . H 5 HOH A 29 429 75 HOH HOH . H 5 HOH A 30 430 76 HOH HOH . H 5 HOH A 31 431 77 HOH HOH . H 5 HOH A 32 432 78 HOH HOH . H 5 HOH A 33 433 79 HOH HOH . I 5 HOH B 1 401 4 HOH HOH . I 5 HOH B 2 402 6 HOH HOH . I 5 HOH B 3 403 9 HOH HOH . I 5 HOH B 4 404 10 HOH HOH . I 5 HOH B 5 405 12 HOH HOH . I 5 HOH B 6 406 14 HOH HOH . I 5 HOH B 7 407 15 HOH HOH . I 5 HOH B 8 408 17 HOH HOH . I 5 HOH B 9 409 24 HOH HOH . I 5 HOH B 10 410 25 HOH HOH . I 5 HOH B 11 411 27 HOH HOH . I 5 HOH B 12 412 28 HOH HOH . I 5 HOH B 13 413 29 HOH HOH . I 5 HOH B 14 414 33 HOH HOH . I 5 HOH B 15 415 34 HOH HOH . I 5 HOH B 16 416 40 HOH HOH . I 5 HOH B 17 417 41 HOH HOH . I 5 HOH B 18 418 42 HOH HOH . I 5 HOH B 19 419 45 HOH HOH . I 5 HOH B 20 420 48 HOH HOH . I 5 HOH B 21 421 52 HOH HOH . I 5 HOH B 22 422 58 HOH HOH . I 5 HOH B 23 423 59 HOH HOH . I 5 HOH B 24 424 61 HOH HOH . I 5 HOH B 25 425 62 HOH HOH . I 5 HOH B 26 426 69 HOH HOH . I 5 HOH B 27 427 72 HOH HOH . I 5 HOH B 28 428 74 HOH HOH . I 5 HOH B 29 429 80 HOH HOH . I 5 HOH B 30 430 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 6.567 -6.702 -4.933 1 28.03 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . E 4 7.114 -7.185 -3.701 1 27.28 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . E 4 5.872 -5.373 -4.689 1 28.76 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . E 4 6.814 -4.45 -4.124 1 28.14 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . E 4 5.338 -4.868 -6.025 1 29.46 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . E 4 4.847 -3.528 -5.901 1 29.74 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #