data_4J1Q # _model_server_result.job_id g-iw1pXypD9CIq2QJxZpvQ _model_server_result.datetime_utc '2024-12-26 23:03:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4J1Q # _exptl.entry_id 4J1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4J1Q _cell.length_a 59.529 _cell.length_b 59.529 _cell.length_c 220.792 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 235 n n PA O2A NDP sing 236 n n PA O5B NDP sing 237 n n PA O3 NDP sing 238 n n O2A HOA2 NDP sing 239 n n O5B C5B NDP sing 240 n n C5B C4B NDP sing 241 n n C5B H51A NDP sing 242 n n C5B H52A NDP sing 243 n n C4B O4B NDP sing 244 n n C4B C3B NDP sing 245 n n C4B H4B NDP sing 246 n n O4B C1B NDP sing 247 n n C3B O3B NDP sing 248 n n C3B C2B NDP sing 249 n n C3B H3B NDP sing 250 n n O3B HO3A NDP sing 251 n n C2B O2B NDP sing 252 n n C2B C1B NDP sing 253 n n C2B H2B NDP sing 254 n n O2B P2B NDP sing 255 n n C1B N9A NDP sing 256 n n C1B H1B NDP sing 257 n n N9A C8A NDP sing 258 n y N9A C4A NDP sing 259 n y C8A N7A NDP doub 260 n y C8A H8A NDP sing 261 n n N7A C5A NDP sing 262 n y C5A C6A NDP sing 263 n y C5A C4A NDP doub 264 n y C6A N6A NDP sing 265 n n C6A N1A NDP doub 266 n y N6A H61A NDP sing 267 n n N6A H62A NDP sing 268 n n N1A C2A NDP sing 269 n y C2A N3A NDP doub 270 n y C2A H2A NDP sing 271 n n N3A C4A NDP sing 272 n y O3 PN NDP sing 273 n n PN O1N NDP doub 274 n n PN O2N NDP sing 275 n n PN O5D NDP sing 276 n n O2N H21N NDP sing 277 n n O5D C5D NDP sing 278 n n C5D C4D NDP sing 279 n n C5D H51N NDP sing 280 n n C5D H52N NDP sing 281 n n C4D O4D NDP sing 282 n n C4D C3D NDP sing 283 n n C4D H4D NDP sing 284 n n O4D C1D NDP sing 285 n n C3D O3D NDP sing 286 n n C3D C2D NDP sing 287 n n C3D H3D NDP sing 288 n n O3D HO3N NDP sing 289 n n C2D O2D NDP sing 290 n n C2D C1D NDP sing 291 n n C2D H2D NDP sing 292 n n O2D HO2N NDP sing 293 n n C1D N1N NDP sing 294 n n C1D H1D NDP sing 295 n n N1N C2N NDP sing 296 n n N1N C6N NDP sing 297 n n C2N C3N NDP doub 298 n n C2N H2N NDP sing 299 n n C3N C7N NDP sing 300 n n C3N C4N NDP sing 301 n n C7N O7N NDP doub 302 n n C7N N7N NDP sing 303 n n N7N H71N NDP sing 304 n n N7N H72N NDP sing 305 n n C4N C5N NDP sing 306 n n C4N H41N NDP sing 307 n n C4N H42N NDP sing 308 n n C5N C6N NDP doub 309 n n C5N H5N NDP sing 310 n n C6N H6N NDP sing 311 n n P2B O1X NDP doub 312 n n P2B O2X NDP sing 313 n n P2B O3X NDP sing 314 n n O2X HOP2 NDP sing 315 n n O3X HOP3 NDP sing 316 n n # _atom_sites.entry_id 4J1Q _atom_sites.fract_transf_matrix[1][1] 0.016799 _atom_sites.fract_transf_matrix[1][2] 0.009699 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NDP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 430 _pdbx_nonpoly_scheme.pdb_mon_id NDP _pdbx_nonpoly_scheme.auth_mon_id NDP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 7.303 15.141 93.549 1 42.82 ? PA NDP 501 A 1 HETATM 2 O O1A NDP . . . B 2 8.192 14.098 92.861 1 51.22 ? O1A NDP 501 A 1 HETATM 3 O O2A NDP . . . B 2 6.189 15.866 92.86 1 35.8 ? O2A NDP 501 A 1 HETATM 4 O O5B NDP . . . B 2 8.246 16.208 94.272 1 31.83 ? O5B NDP 501 A 1 HETATM 5 C C5B NDP . . . B 2 9.627 15.925 94.51 1 31.17 ? C5B NDP 501 A 1 HETATM 6 C C4B NDP . . . B 2 10.392 17.107 93.937 1 24.24 ? C4B NDP 501 A 1 HETATM 7 O O4B NDP . . . B 2 11.759 16.996 94.339 1 28.89 ? O4B NDP 501 A 1 HETATM 8 C C3B NDP . . . B 2 10.412 17.032 92.418 1 25.25 ? C3B NDP 501 A 1 HETATM 9 O O3B NDP . . . B 2 9.828 18.296 91.995 1 35.86 ? O3B NDP 501 A 1 HETATM 10 C C2B NDP . . . B 2 11.888 16.954 92.035 1 22.89 ? C2B NDP 501 A 1 HETATM 11 O O2B NDP . . . B 2 12.196 17.919 90.983 1 29.46 ? O2B NDP 501 A 1 HETATM 12 C C1B NDP . . . B 2 12.616 17.418 93.283 1 19.91 ? C1B NDP 501 A 1 HETATM 13 N N9A NDP . . . B 2 13.911 16.679 93.367 1 20.36 ? N9A NDP 501 A 1 HETATM 14 C C8A NDP . . . B 2 14.114 15.328 93.167 1 13.95 ? C8A NDP 501 A 1 HETATM 15 N N7A NDP . . . B 2 15.467 15.073 93.352 1 16.99 ? N7A NDP 501 A 1 HETATM 16 C C5A NDP . . . B 2 16.089 16.275 93.732 1 14.77 ? C5A NDP 501 A 1 HETATM 17 C C6A NDP . . . B 2 17.4 16.633 94.039 1 19.31 ? C6A NDP 501 A 1 HETATM 18 N N6A NDP . . . B 2 18.436 15.734 93.99 1 17.86 ? N6A NDP 501 A 1 HETATM 19 N N1A NDP . . . B 2 17.679 17.927 94.368 1 24.24 ? N1A NDP 501 A 1 HETATM 20 C C2A NDP . . . B 2 16.703 18.868 94.364 1 18.82 ? C2A NDP 501 A 1 HETATM 21 N N3A NDP . . . B 2 15.436 18.546 94.027 1 26.12 ? N3A NDP 501 A 1 HETATM 22 C C4A NDP . . . B 2 15.091 17.251 93.746 1 17.05 ? C4A NDP 501 A 1 HETATM 23 O O3 NDP . . . B 2 6.717 14.431 94.874 1 37.32 ? O3 NDP 501 A 1 HETATM 24 P PN NDP . . . B 2 5.793 15.236 95.903 1 41.65 ? PN NDP 501 A 1 HETATM 25 O O1N NDP . . . B 2 4.484 14.451 95.876 1 37.32 ? O1N NDP 501 A 1 HETATM 26 O O2N NDP . . . B 2 5.908 16.735 95.697 1 43.77 ? O2N NDP 501 A 1 HETATM 27 O O5D NDP . . . B 2 6.523 14.899 97.304 1 39.28 ? O5D NDP 501 A 1 HETATM 28 C C5D NDP . . . B 2 7.127 15.9 98.135 1 35.06 ? C5D NDP 501 A 1 HETATM 29 C C4D NDP . . . B 2 7.896 15.173 99.262 1 40.63 ? C4D NDP 501 A 1 HETATM 30 O O4D NDP . . . B 2 6.944 14.58 100.172 1 36.72 ? O4D NDP 501 A 1 HETATM 31 C C3D NDP . . . B 2 8.734 14.014 98.703 1 27.77 ? C3D NDP 501 A 1 HETATM 32 O O3D NDP . . . B 2 10.028 13.964 99.349 1 30.05 ? O3D NDP 501 A 1 HETATM 33 C C2D NDP . . . B 2 7.913 12.8 99.011 1 32.03 ? C2D NDP 501 A 1 HETATM 34 O O2D NDP . . . B 2 8.789 11.695 99.253 1 30.21 ? O2D NDP 501 A 1 HETATM 35 C C1D NDP . . . B 2 7.095 13.179 100.254 1 36.34 ? C1D NDP 501 A 1 HETATM 36 N N1N NDP . . . B 2 5.787 12.51 100.262 1 40.01 ? N1N NDP 501 A 1 HETATM 37 C C2N NDP . . . B 2 4.841 12.778 99.317 1 43.51 ? C2N NDP 501 A 1 HETATM 38 C C3N NDP . . . B 2 3.606 12.089 99.295 1 35.44 ? C3N NDP 501 A 1 HETATM 39 C C7N NDP . . . B 2 2.556 12.423 98.233 1 55.92 ? C7N NDP 501 A 1 HETATM 40 O O7N NDP . . . B 2 1.389 12.056 98.425 1 48.88 ? O7N NDP 501 A 1 HETATM 41 N N7N NDP . . . B 2 2.913 13.02 97.071 1 38.74 ? N7N NDP 501 A 1 HETATM 42 C C4N NDP . . . B 2 3.363 11.053 100.235 1 34.57 ? C4N NDP 501 A 1 HETATM 43 C C5N NDP . . . B 2 4.372 10.777 101.179 1 38.42 ? C5N NDP 501 A 1 HETATM 44 C C6N NDP . . . B 2 5.577 11.521 101.154 1 40.2 ? C6N NDP 501 A 1 HETATM 45 P P2B NDP . . . B 2 13.421 17.686 89.947 1 28.03 ? P2B NDP 501 A 1 HETATM 46 O O1X NDP . . . B 2 13.16 16.251 89.438 1 30.05 ? O1X NDP 501 A 1 HETATM 47 O O2X NDP . . . B 2 13.175 18.857 89.004 1 30.16 ? O2X NDP 501 A 1 HETATM 48 O O3X NDP . . . B 2 14.7 17.8 90.751 1 26.66 ? O3X NDP 501 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #