data_4J1R # _model_server_result.job_id Iua9NAiXUroHKb5aRLi87A _model_server_result.datetime_utc '2024-11-04 23:06:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 4J1R # _exptl.entry_id 4J1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.309 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-(1H-indol-3-ylmethyl)-1,4-dihydropyrido[2,3-b]pyrazin-3(2H)-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.13 _cell.angle_beta 90.08 _cell.angle_gamma 81.11 _cell.entry_id 4J1R _cell.length_a 67.516 _cell.length_b 67.441 _cell.length_c 116.422 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 PISA dimeric 2 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,Q 1 1 B,H,I,J,R 2 1 C,K,L,M,S 3 1 D,N,O,P,T 4 1 A,B,E,F,G,H,I,J,Q,R 5 1 C,D,K,L,M,N,O,P,S,T 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 L N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 219 A SER 215 1_555 A N PTR 220 A PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 A C PTR 220 A PTR 216 1_555 A N ILE 221 A ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 B C SER 219 B SER 215 1_555 B N PTR 220 B PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 B C PTR 220 B PTR 216 1_555 B N ILE 221 B ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale5 C C SER 219 C SER 215 1_555 C N PTR 220 C PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 C C PTR 220 C PTR 216 1_555 C N ILE 221 C ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 D C SER 219 D SER 215 1_555 D N PTR 220 D PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 D C PTR 220 D PTR 216 1_555 D N ILE 221 D ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A OG1 THR 47 A THR 43 1_555 G K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.497 ? metalc ? metalc2 B OG1 THR 47 B THR 43 1_555 J K K . B K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.484 ? metalc ? metalc3 C OG1 THR 47 C THR 43 1_555 M K K . C K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.452 ? metalc ? metalc4 D OG1 THR 47 D THR 43 1_555 P K K . D K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.49 ? # _chem_comp.formula 'C16 H14 N4 O' _chem_comp.formula_weight 278.309 _chem_comp.id I5R _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-(1H-indol-3-ylmethyl)-1,4-dihydropyrido[2,3-b]pyrazin-3(2H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C I5R doub 152 n n C CA I5R sing 153 n n C NAL I5R sing 154 n n CA N I5R sing 155 n n CA CB I5R sing 156 n n N CAQ I5R sing 157 n n CD1 NE1 I5R sing 158 n y CD1 CG I5R doub 159 n y NAL CAR I5R sing 160 n n NE1 CE2 I5R sing 161 n y CB CG I5R sing 162 n n CAQ CAR I5R doub 163 n y CAQ CAF I5R sing 164 n y CG CD2 I5R sing 165 n y CAR NAK I5R sing 166 n y CAF CAD I5R doub 167 n y CE2 CD2 I5R doub 168 n y CE2 CZ2 I5R sing 169 n y NAK CAE I5R doub 170 n y CD2 CE3 I5R sing 171 n y CAD CAE I5R sing 172 n y CZ2 CH2 I5R doub 173 n y CE3 CZ3 I5R doub 174 n y CH2 CZ3 I5R sing 175 n y NAL H1 I5R sing 176 n n CAE H2 I5R sing 177 n n CAD H3 I5R sing 178 n n CAF H4 I5R sing 179 n n N H5 I5R sing 180 n n CA H6 I5R sing 181 n n CB H7 I5R sing 182 n n CB H8 I5R sing 183 n n CE3 H9 I5R sing 184 n n CZ3 H10 I5R sing 185 n n CH2 H11 I5R sing 186 n n CZ2 H12 I5R sing 187 n n NE1 H13 I5R sing 188 n n CD1 H14 I5R sing 189 n n # _atom_sites.entry_id 4J1R _atom_sites.fract_transf_matrix[1][1] 0.014811 _atom_sites.fract_transf_matrix[1][2] -0.002317 _atom_sites.fract_transf_matrix[1][3] 0.000017 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015008 _atom_sites.fract_transf_matrix[2][3] 0.000031 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 501 1 PO4 PO4 . F 3 I5R A 1 502 1 I5R DRG . G 4 K A 1 503 1 K K . H 2 PO4 B 1 501 4 PO4 PO4 . I 3 I5R B 1 502 1 I5R DRG . J 4 K B 1 503 1 K K . K 2 PO4 C 1 501 2 PO4 PO4 . L 3 I5R C 1 502 1 I5R DRG . M 4 K C 1 503 1 K K . N 2 PO4 D 1 501 3 PO4 PO4 . O 3 I5R D 1 502 1 I5R DRG . P 4 K D 1 503 1 K K . Q 5 HOH A 1 601 5 HOH HOH . Q 5 HOH A 2 602 25 HOH HOH . Q 5 HOH A 3 603 50 HOH HOH . Q 5 HOH A 4 604 56 HOH HOH . Q 5 HOH A 5 605 65 HOH HOH . Q 5 HOH A 6 606 72 HOH HOH . Q 5 HOH A 7 607 74 HOH HOH . Q 5 HOH A 8 608 75 HOH HOH . Q 5 HOH A 9 609 79 HOH HOH . Q 5 HOH A 10 610 93 HOH HOH . Q 5 HOH A 11 611 178 HOH HOH . Q 5 HOH A 12 612 208 HOH HOH . Q 5 HOH A 13 613 214 HOH HOH . Q 5 HOH A 14 614 239 HOH HOH . Q 5 HOH A 15 615 278 HOH HOH . Q 5 HOH A 16 616 296 HOH HOH . Q 5 HOH A 17 617 360 HOH HOH . Q 5 HOH A 18 618 362 HOH HOH . Q 5 HOH A 19 619 363 HOH HOH . Q 5 HOH A 20 620 364 HOH HOH . R 5 HOH B 1 601 6 HOH HOH . R 5 HOH B 2 602 17 HOH HOH . R 5 HOH B 3 603 19 HOH HOH . R 5 HOH B 4 604 22 HOH HOH . R 5 HOH B 5 605 27 HOH HOH . R 5 HOH B 6 606 33 HOH HOH . R 5 HOH B 7 607 39 HOH HOH . R 5 HOH B 8 608 55 HOH HOH . R 5 HOH B 9 609 80 HOH HOH . R 5 HOH B 10 610 89 HOH HOH . R 5 HOH B 11 611 118 HOH HOH . R 5 HOH B 12 612 134 HOH HOH . R 5 HOH B 13 613 135 HOH HOH . R 5 HOH B 14 614 137 HOH HOH . R 5 HOH B 15 615 144 HOH HOH . R 5 HOH B 16 616 163 HOH HOH . R 5 HOH B 17 617 183 HOH HOH . R 5 HOH B 18 618 190 HOH HOH . R 5 HOH B 19 619 262 HOH HOH . R 5 HOH B 20 620 365 HOH HOH . R 5 HOH B 21 621 367 HOH HOH . R 5 HOH B 22 622 368 HOH HOH . R 5 HOH B 23 623 369 HOH HOH . R 5 HOH B 24 624 370 HOH HOH . R 5 HOH B 25 625 371 HOH HOH . R 5 HOH B 26 626 372 HOH HOH . R 5 HOH B 27 627 373 HOH HOH . S 5 HOH C 1 601 24 HOH HOH . S 5 HOH C 2 602 29 HOH HOH . S 5 HOH C 3 603 36 HOH HOH . S 5 HOH C 4 604 49 HOH HOH . S 5 HOH C 5 605 61 HOH HOH . S 5 HOH C 6 606 71 HOH HOH . S 5 HOH C 7 607 83 HOH HOH . S 5 HOH C 8 608 114 HOH HOH . S 5 HOH C 9 609 130 HOH HOH . S 5 HOH C 10 610 143 HOH HOH . S 5 HOH C 11 611 146 HOH HOH . S 5 HOH C 12 612 195 HOH HOH . S 5 HOH C 13 613 231 HOH HOH . S 5 HOH C 14 614 236 HOH HOH . S 5 HOH C 15 615 291 HOH HOH . S 5 HOH C 16 616 347 HOH HOH . S 5 HOH C 17 617 375 HOH HOH . S 5 HOH C 18 618 376 HOH HOH . S 5 HOH C 19 619 377 HOH HOH . S 5 HOH C 20 620 378 HOH HOH . S 5 HOH C 21 621 379 HOH HOH . S 5 HOH C 22 622 380 HOH HOH . S 5 HOH C 23 623 385 HOH HOH . T 5 HOH D 1 601 2 HOH HOH . T 5 HOH D 2 602 4 HOH HOH . T 5 HOH D 3 603 16 HOH HOH . T 5 HOH D 4 604 31 HOH HOH . T 5 HOH D 5 605 32 HOH HOH . T 5 HOH D 6 606 44 HOH HOH . T 5 HOH D 7 607 45 HOH HOH . T 5 HOH D 8 608 46 HOH HOH . T 5 HOH D 9 609 53 HOH HOH . T 5 HOH D 10 610 54 HOH HOH . T 5 HOH D 11 611 60 HOH HOH . T 5 HOH D 12 612 67 HOH HOH . T 5 HOH D 13 613 86 HOH HOH . T 5 HOH D 14 614 88 HOH HOH . T 5 HOH D 15 615 105 HOH HOH . T 5 HOH D 16 616 159 HOH HOH . T 5 HOH D 17 617 161 HOH HOH . T 5 HOH D 18 618 162 HOH HOH . T 5 HOH D 19 619 215 HOH HOH . T 5 HOH D 20 620 282 HOH HOH . T 5 HOH D 21 621 358 HOH HOH . T 5 HOH D 22 622 383 HOH HOH . T 5 HOH D 23 623 384 HOH HOH . T 5 HOH D 24 624 386 HOH HOH . T 5 HOH D 25 625 387 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O I5R . . . F 3 40.481 32.894 28.501 1 77.23 ? O I5R 502 A 1 HETATM 2 C C I5R . . . F 3 39.489 33.343 29.06 1 65.88 ? C I5R 502 A 1 HETATM 3 N NAL I5R . . . F 3 39.678 34.401 29.9 1 49.15 ? NAL I5R 502 A 1 HETATM 4 C CAR I5R . . . F 3 38.672 35.013 30.653 1 61.04 ? CAR I5R 502 A 1 HETATM 5 N NAK I5R . . . F 3 38.793 36.041 31.317 1 65.06 ? NAK I5R 502 A 1 HETATM 6 C CAE I5R . . . F 3 37.722 36.648 32.025 1 63.94 ? CAE I5R 502 A 1 HETATM 7 C CAD I5R . . . F 3 36.44 36.064 31.932 1 54.33 ? CAD I5R 502 A 1 HETATM 8 C CAF I5R . . . F 3 36.284 34.943 31.165 1 67.22 ? CAF I5R 502 A 1 HETATM 9 C CAQ I5R . . . F 3 37.309 34.381 30.427 1 75.94 ? CAQ I5R 502 A 1 HETATM 10 N N I5R . . . F 3 37.184 33.218 29.75 1 59.12 ? N I5R 502 A 1 HETATM 11 C CA I5R . . . F 3 38.329 32.522 29.16 1 57.24 ? CA I5R 502 A 1 HETATM 12 C CB I5R . . . F 3 38.663 31.578 30.35 1 58.69 ? CB I5R 502 A 1 HETATM 13 C CG I5R . . . F 3 37.495 30.584 30.599 1 58.8 ? CG I5R 502 A 1 HETATM 14 C CD2 I5R . . . F 3 36.557 30.582 31.537 1 50.94 ? CD2 I5R 502 A 1 HETATM 15 C CE3 I5R . . . F 3 36.237 31.394 32.581 1 51.8 ? CE3 I5R 502 A 1 HETATM 16 C CZ3 I5R . . . F 3 35.146 31.121 33.417 1 44.39 ? CZ3 I5R 502 A 1 HETATM 17 C CH2 I5R . . . F 3 34.382 29.991 33.157 1 49.98 ? CH2 I5R 502 A 1 HETATM 18 C CZ2 I5R . . . F 3 34.744 29.186 32.079 1 60.96 ? CZ2 I5R 502 A 1 HETATM 19 C CE2 I5R . . . F 3 35.795 29.487 31.304 1 65.21 ? CE2 I5R 502 A 1 HETATM 20 N NE1 I5R . . . F 3 36.295 28.856 30.239 1 64.68 ? NE1 I5R 502 A 1 HETATM 21 C CD1 I5R . . . F 3 37.358 29.525 29.796 1 67.89 ? CD1 I5R 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #