data_4J1R
#
_model_server_result.job_id            Ho2c6_qH9WswYe864cjgjA 
_model_server_result.datetime_utc      '2024-11-04 23:06:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j1r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":502}' 
#
_entry.id    4J1R 
#
_exptl.entry_id    4J1R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              278.309 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-2-(1H-indol-3-ylmethyl)-1,4-dihydropyrido[2,3-b]pyrazin-3(2H)-one 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.13 
_cell.angle_beta          90.08 
_cell.angle_gamma         81.11 
_cell.entry_id            4J1R 
_cell.length_a            67.516 
_cell.length_b            67.441 
_cell.length_c            116.422 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J1R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
PISA dimeric 2 software_defined_assembly 5 
PISA dimeric 2 software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,Q 1 1 
B,H,I,J,R 2 1 
C,K,L,M,S 3 1 
D,N,O,P,T 4 1 
A,B,E,F,G,H,I,J,Q,R 5 1 
C,D,K,L,M,N,O,P,S,T 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 L N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 219 A SER 215 1_555 A N PTR 220 A PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale2 A C PTR 220 A PTR 216 1_555 A N ILE 221 A ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale3 B C SER 219 B SER 215 1_555 B N PTR 220 B PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale4 B C PTR 220 B PTR 216 1_555 B N ILE 221 B ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale5 C C SER 219 C SER 215 1_555 C N PTR 220 C PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale6 C C PTR 220 C PTR 216 1_555 C N ILE 221 C ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale7 D C SER 219 D SER 215 1_555 D N PTR 220 D PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale8 D C PTR 220 D PTR 216 1_555 D N ILE 221 D ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
metalc ? metalc1 A OG1 THR 47 A THR 43 1_555 G K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.497 ? 
metalc ? metalc2 B OG1 THR 47 B THR 43 1_555 J K K . B K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.484 ? 
metalc ? metalc3 C OG1 THR 47 C THR 43 1_555 M K K . C K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.452 ? 
metalc ? metalc4 D OG1 THR 47 D THR 43 1_555 P K K . D K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.49 ? 
#
_chem_comp.formula           'C16 H14 N4 O' 
_chem_comp.formula_weight    278.309 
_chem_comp.id                I5R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-2-(1H-indol-3-ylmethyl)-1,4-dihydropyrido[2,3-b]pyrazin-3(2H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C I5R doub 152 n n 
C CA I5R sing 153 n n 
C NAL I5R sing 154 n n 
CA N I5R sing 155 n n 
CA CB I5R sing 156 n n 
N CAQ I5R sing 157 n n 
CD1 NE1 I5R sing 158 n y 
CD1 CG I5R doub 159 n y 
NAL CAR I5R sing 160 n n 
NE1 CE2 I5R sing 161 n y 
CB CG I5R sing 162 n n 
CAQ CAR I5R doub 163 n y 
CAQ CAF I5R sing 164 n y 
CG CD2 I5R sing 165 n y 
CAR NAK I5R sing 166 n y 
CAF CAD I5R doub 167 n y 
CE2 CD2 I5R doub 168 n y 
CE2 CZ2 I5R sing 169 n y 
NAK CAE I5R doub 170 n y 
CD2 CE3 I5R sing 171 n y 
CAD CAE I5R sing 172 n y 
CZ2 CH2 I5R doub 173 n y 
CE3 CZ3 I5R doub 174 n y 
CH2 CZ3 I5R sing 175 n y 
NAL H1 I5R sing 176 n n 
CAE H2 I5R sing 177 n n 
CAD H3 I5R sing 178 n n 
CAF H4 I5R sing 179 n n 
N H5 I5R sing 180 n n 
CA H6 I5R sing 181 n n 
CB H7 I5R sing 182 n n 
CB H8 I5R sing 183 n n 
CE3 H9 I5R sing 184 n n 
CZ3 H10 I5R sing 185 n n 
CH2 H11 I5R sing 186 n n 
CZ2 H12 I5R sing 187 n n 
NE1 H13 I5R sing 188 n n 
CD1 H14 I5R sing 189 n n 
#
_atom_sites.entry_id                     4J1R 
_atom_sites.fract_transf_matrix[1][1]    0.014811 
_atom_sites.fract_transf_matrix[1][2]    -0.002317 
_atom_sites.fract_transf_matrix[1][3]    0.000017 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015008 
_atom_sites.fract_transf_matrix[2][3]    0.000031 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008589 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PO4 A 1 501 1 PO4 PO4 . 
F 3 I5R A 1 502 1 I5R DRG . 
G 4 K A 1 503 1 K K . 
H 2 PO4 B 1 501 4 PO4 PO4 . 
I 3 I5R B 1 502 1 I5R DRG . 
J 4 K B 1 503 1 K K . 
K 2 PO4 C 1 501 2 PO4 PO4 . 
L 3 I5R C 1 502 1 I5R DRG . 
M 4 K C 1 503 1 K K . 
N 2 PO4 D 1 501 3 PO4 PO4 . 
O 3 I5R D 1 502 1 I5R DRG . 
P 4 K D 1 503 1 K K . 
Q 5 HOH A 1 601 5 HOH HOH . 
Q 5 HOH A 2 602 25 HOH HOH . 
Q 5 HOH A 3 603 50 HOH HOH . 
Q 5 HOH A 4 604 56 HOH HOH . 
Q 5 HOH A 5 605 65 HOH HOH . 
Q 5 HOH A 6 606 72 HOH HOH . 
Q 5 HOH A 7 607 74 HOH HOH . 
Q 5 HOH A 8 608 75 HOH HOH . 
Q 5 HOH A 9 609 79 HOH HOH . 
Q 5 HOH A 10 610 93 HOH HOH . 
Q 5 HOH A 11 611 178 HOH HOH . 
Q 5 HOH A 12 612 208 HOH HOH . 
Q 5 HOH A 13 613 214 HOH HOH . 
Q 5 HOH A 14 614 239 HOH HOH . 
Q 5 HOH A 15 615 278 HOH HOH . 
Q 5 HOH A 16 616 296 HOH HOH . 
Q 5 HOH A 17 617 360 HOH HOH . 
Q 5 HOH A 18 618 362 HOH HOH . 
Q 5 HOH A 19 619 363 HOH HOH . 
Q 5 HOH A 20 620 364 HOH HOH . 
R 5 HOH B 1 601 6 HOH HOH . 
R 5 HOH B 2 602 17 HOH HOH . 
R 5 HOH B 3 603 19 HOH HOH . 
R 5 HOH B 4 604 22 HOH HOH . 
R 5 HOH B 5 605 27 HOH HOH . 
R 5 HOH B 6 606 33 HOH HOH . 
R 5 HOH B 7 607 39 HOH HOH . 
R 5 HOH B 8 608 55 HOH HOH . 
R 5 HOH B 9 609 80 HOH HOH . 
R 5 HOH B 10 610 89 HOH HOH . 
R 5 HOH B 11 611 118 HOH HOH . 
R 5 HOH B 12 612 134 HOH HOH . 
R 5 HOH B 13 613 135 HOH HOH . 
R 5 HOH B 14 614 137 HOH HOH . 
R 5 HOH B 15 615 144 HOH HOH . 
R 5 HOH B 16 616 163 HOH HOH . 
R 5 HOH B 17 617 183 HOH HOH . 
R 5 HOH B 18 618 190 HOH HOH . 
R 5 HOH B 19 619 262 HOH HOH . 
R 5 HOH B 20 620 365 HOH HOH . 
R 5 HOH B 21 621 367 HOH HOH . 
R 5 HOH B 22 622 368 HOH HOH . 
R 5 HOH B 23 623 369 HOH HOH . 
R 5 HOH B 24 624 370 HOH HOH . 
R 5 HOH B 25 625 371 HOH HOH . 
R 5 HOH B 26 626 372 HOH HOH . 
R 5 HOH B 27 627 373 HOH HOH . 
S 5 HOH C 1 601 24 HOH HOH . 
S 5 HOH C 2 602 29 HOH HOH . 
S 5 HOH C 3 603 36 HOH HOH . 
S 5 HOH C 4 604 49 HOH HOH . 
S 5 HOH C 5 605 61 HOH HOH . 
S 5 HOH C 6 606 71 HOH HOH . 
S 5 HOH C 7 607 83 HOH HOH . 
S 5 HOH C 8 608 114 HOH HOH . 
S 5 HOH C 9 609 130 HOH HOH . 
S 5 HOH C 10 610 143 HOH HOH . 
S 5 HOH C 11 611 146 HOH HOH . 
S 5 HOH C 12 612 195 HOH HOH . 
S 5 HOH C 13 613 231 HOH HOH . 
S 5 HOH C 14 614 236 HOH HOH . 
S 5 HOH C 15 615 291 HOH HOH . 
S 5 HOH C 16 616 347 HOH HOH . 
S 5 HOH C 17 617 375 HOH HOH . 
S 5 HOH C 18 618 376 HOH HOH . 
S 5 HOH C 19 619 377 HOH HOH . 
S 5 HOH C 20 620 378 HOH HOH . 
S 5 HOH C 21 621 379 HOH HOH . 
S 5 HOH C 22 622 380 HOH HOH . 
S 5 HOH C 23 623 385 HOH HOH . 
T 5 HOH D 1 601 2 HOH HOH . 
T 5 HOH D 2 602 4 HOH HOH . 
T 5 HOH D 3 603 16 HOH HOH . 
T 5 HOH D 4 604 31 HOH HOH . 
T 5 HOH D 5 605 32 HOH HOH . 
T 5 HOH D 6 606 44 HOH HOH . 
T 5 HOH D 7 607 45 HOH HOH . 
T 5 HOH D 8 608 46 HOH HOH . 
T 5 HOH D 9 609 53 HOH HOH . 
T 5 HOH D 10 610 54 HOH HOH . 
T 5 HOH D 11 611 60 HOH HOH . 
T 5 HOH D 12 612 67 HOH HOH . 
T 5 HOH D 13 613 86 HOH HOH . 
T 5 HOH D 14 614 88 HOH HOH . 
T 5 HOH D 15 615 105 HOH HOH . 
T 5 HOH D 16 616 159 HOH HOH . 
T 5 HOH D 17 617 161 HOH HOH . 
T 5 HOH D 18 618 162 HOH HOH . 
T 5 HOH D 19 619 215 HOH HOH . 
T 5 HOH D 20 620 282 HOH HOH . 
T 5 HOH D 21 621 358 HOH HOH . 
T 5 HOH D 22 622 383 HOH HOH . 
T 5 HOH D 23 623 384 HOH HOH . 
T 5 HOH D 24 624 386 HOH HOH . 
T 5 HOH D 25 625 387 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O I5R . . . O 3 79.599 50.734 86.728 1 48.56 ? O I5R 502 D 1 
HETATM 2 C C I5R . . . O 3 79.878 49.684 86.003 1 57.23 ? C I5R 502 D 1 
HETATM 3 N NAL I5R . . . O 3 80.902 49.797 85.171 1 39.46 ? NAL I5R 502 D 1 
HETATM 4 C CAR I5R . . . O 3 81.307 48.742 84.326 1 66.37 ? CAR I5R 502 D 1 
HETATM 5 N NAK I5R . . . O 3 82.343 48.733 83.643 1 64.49 ? NAK I5R 502 D 1 
HETATM 6 C CAE I5R . . . O 3 82.745 47.628 82.856 1 60.13 ? CAE I5R 502 D 1 
HETATM 7 C CAD I5R . . . O 3 81.957 46.465 82.88 1 60.13 ? CAD I5R 502 D 1 
HETATM 8 C CAF I5R . . . O 3 80.834 46.441 83.66 1 58.94 ? CAF I5R 502 D 1 
HETATM 9 C CAQ I5R . . . O 3 80.458 47.498 84.462 1 69.91 ? CAQ I5R 502 D 1 
HETATM 10 N N I5R . . . O 3 79.318 47.518 85.19 1 52.52 ? N I5R 502 D 1 
HETATM 11 C CA I5R . . . O 3 78.831 48.736 85.888 1 62.44 ? CA I5R 502 D 1 
HETATM 12 C CB I5R . . . O 3 77.893 49.275 84.768 1 56.81 ? CB I5R 502 D 1 
HETATM 13 C CG I5R . . . O 3 76.69 48.32 84.566 1 68.36 ? CG I5R 502 D 1 
HETATM 14 C CD2 I5R . . . O 3 76.421 47.394 83.66 1 84.69 ? CD2 I5R 502 D 1 
HETATM 15 C CE3 I5R . . . O 3 77.076 46.911 82.574 1 83.99 ? CE3 I5R 502 D 1 
HETATM 16 C CZ3 I5R . . . O 3 76.521 45.894 81.792 1 74.07 ? CZ3 I5R 502 D 1 
HETATM 17 C CH2 I5R . . . O 3 75.277 45.369 82.133 1 57.54 ? CH2 I5R 502 D 1 
HETATM 18 C CZ2 I5R . . . O 3 74.64 45.885 83.254 1 67.07 ? CZ2 I5R 502 D 1 
HETATM 19 C CE2 I5R . . . O 3 75.211 46.861 83.978 1 79.74 ? CE2 I5R 502 D 1 
HETATM 20 N NE1 I5R . . . O 3 74.775 47.487 85.064 1 71.19 ? NE1 I5R 502 D 1 
HETATM 21 C CD1 I5R . . . O 3 75.683 48.393 85.432 1 68.47 ? CD1 I5R 502 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           21 
#