data_4J1W
#
_model_server_result.job_id            i197VMF5cGXVwgK3EkfPKA 
_model_server_result.datetime_utc      '2024-10-12 14:25:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j1w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":202}' 
#
_entry.id    4J1W 
#
_exptl.entry_id    4J1W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              140.075 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(1R)-1-hydroxypropyl]phosphonic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4J1W 
_cell.length_a            111.489 
_cell.length_b            111.489 
_cell.length_c            151.484 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J1W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,H,I,J,N,O 1 1,2 
C,K,L,M,P 2 1,3,4,5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_765 -x+2,-y+1,z -1 0 0 0 -1 0 0 0 1 222.978 111.489 0 
3 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 111.489 111.489 0 
4 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
5 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 111.489 111.489 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 138 A HIS 138 1_555 D FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc2 A OE1 GLU 142 A GLU 142 1_555 D FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc3 A NE2 HIS 180 A HIS 180 1_555 D FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc4 D FE FE2 . A FE2 201 1_555 E O3 FFQ . A FFQ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc5 D FE FE2 . A FE2 201 1_555 E O1 FFQ . A FFQ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc6 B NE2 HIS 138 B HIS 138 1_555 H FE FE2 . B FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc7 B OE1 GLU 142 B GLU 142 1_555 H FE FE2 . B FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc8 B NE2 HIS 180 B HIS 180 1_555 H FE FE2 . B FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc9 H FE FE2 . B FE2 201 1_555 I O4 FFQ . B FFQ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc10 H FE FE2 . B FE2 201 1_555 I O1 FFQ . B FFQ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc11 C NE2 HIS 138 C HIS 138 1_555 K FE FE2 . C FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc12 C OE1 GLU 142 C GLU 142 1_555 K FE FE2 . C FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc13 C NE2 HIS 180 C HIS 180 1_555 K FE FE2 . C FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc14 K FE FE2 . C FE2 201 1_555 L O2 FFQ . C FFQ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc15 K FE FE2 . C FE2 201 1_555 L O1 FFQ . C FFQ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
#
_chem_comp.formula           'C3 H9 O4 P' 
_chem_comp.formula_weight    140.075 
_chem_comp.id                FFQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(1R)-1-hydroxypropyl]phosphonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Fosfomycin, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 FFQ sing 83 n n 
C1 H FFQ sing 84 n n 
O1 C2 FFQ sing 85 n n 
O1 H2 FFQ sing 86 n n 
P1 O4 FFQ sing 87 n n 
P1 O2 FFQ sing 88 n n 
C2 P1 FFQ sing 89 n n 
C2 H1 FFQ sing 90 n n 
O2 HO1 FFQ sing 91 n n 
C3 C1 FFQ sing 92 n n 
C3 H20 FFQ sing 93 n n 
C3 HO2 FFQ sing 94 n n 
C3 H3 FFQ sing 95 n n 
O3 P1 FFQ doub 96 n n 
O4 H3A FFQ sing 97 n n 
C1 H3B FFQ sing 98 n n 
#
_atom_sites.entry_id                     4J1W 
_atom_sites.fract_transf_matrix[1][1]    0.008969 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008969 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006601 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 FE2 A 1 201 201 FE2 FE2 . 
E 3 FFQ A 1 202 1 FFQ S0H . 
F 4 GOL A 1 203 2 GOL GOL . 
G 4 GOL A 1 204 4 GOL GOL . 
H 2 FE2 B 1 201 202 FE2 FE2 . 
I 3 FFQ B 1 202 2 FFQ S0H . 
J 4 GOL B 1 203 1 GOL GOL . 
K 2 FE2 C 1 201 203 FE2 FE2 . 
L 3 FFQ C 1 202 3 FFQ S0H . 
M 4 GOL C 1 203 3 GOL GOL . 
N 5 HOH A 1 301 8 HOH HOH . 
N 5 HOH A 2 302 14 HOH HOH . 
N 5 HOH A 3 303 25 HOH HOH . 
N 5 HOH A 4 304 30 HOH HOH . 
N 5 HOH A 5 305 33 HOH HOH . 
N 5 HOH A 6 306 39 HOH HOH . 
N 5 HOH A 7 307 44 HOH HOH . 
N 5 HOH A 8 308 57 HOH HOH . 
N 5 HOH A 9 309 60 HOH HOH . 
N 5 HOH A 10 310 62 HOH HOH . 
N 5 HOH A 11 311 73 HOH HOH . 
N 5 HOH A 12 312 76 HOH HOH . 
N 5 HOH A 13 313 88 HOH HOH . 
O 5 HOH B 1 301 4 HOH HOH . 
O 5 HOH B 2 302 7 HOH HOH . 
O 5 HOH B 3 303 9 HOH HOH . 
O 5 HOH B 4 304 11 HOH HOH . 
O 5 HOH B 5 305 13 HOH HOH . 
O 5 HOH B 6 306 51 HOH HOH . 
O 5 HOH B 7 307 64 HOH HOH . 
O 5 HOH B 8 308 65 HOH HOH . 
O 5 HOH B 9 309 66 HOH HOH . 
O 5 HOH B 10 310 72 HOH HOH . 
O 5 HOH B 11 311 75 HOH HOH . 
O 5 HOH B 12 312 77 HOH HOH . 
O 5 HOH B 13 313 83 HOH HOH . 
O 5 HOH B 14 314 87 HOH HOH . 
P 5 HOH C 1 301 1 HOH HOH . 
P 5 HOH C 2 302 6 HOH HOH . 
P 5 HOH C 3 303 12 HOH HOH . 
P 5 HOH C 4 304 21 HOH HOH . 
P 5 HOH C 5 305 22 HOH HOH . 
P 5 HOH C 6 306 26 HOH HOH . 
P 5 HOH C 7 307 31 HOH HOH . 
P 5 HOH C 8 308 40 HOH HOH . 
P 5 HOH C 9 309 74 HOH HOH . 
P 5 HOH C 10 310 78 HOH HOH . 
P 5 HOH C 11 311 82 HOH HOH . 
P 5 HOH C 12 312 84 HOH HOH . 
P 5 HOH C 13 313 85 HOH HOH . 
P 5 HOH C 14 314 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 FFQ . . . I 3 113.825 68.324 1.077 1 77.96 ? C1 FFQ 202 B 1 
HETATM 2 O O1 FFQ . . . I 3 115.194 67.483 2.878 1 77.72 ? O1 FFQ 202 B 1 
HETATM 3 P P1 FFQ . . . I 3 114.059 69.857 3.464 1 79.57 ? P1 FFQ 202 B 1 
HETATM 4 C C2 FFQ . . . I 3 114.78 68.667 2.212 1 78.62 ? C2 FFQ 202 B 1 
HETATM 5 O O2 FFQ . . . I 3 115.065 71.094 3.612 1 80.76 ? O2 FFQ 202 B 1 
HETATM 6 C C3 FFQ . . . I 3 114.446 67.357 0.061 1 78.95 ? C3 FFQ 202 B 1 
HETATM 7 O O3 FFQ . . . I 3 112.727 70.35 3.028 1 79.98 ? O3 FFQ 202 B 1 
HETATM 8 O O4 FFQ . . . I 3 113.94 69.119 4.892 1 79.56 ? O4 FFQ 202 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#