data_4J1W # _model_server_result.job_id yeaY8t0mUOBMKlbeco_tIw _model_server_result.datetime_utc '2024-11-27 05:02:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j1w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":204}' # _entry.id 4J1W # _exptl.entry_id 4J1W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J1W _cell.length_a 111.489 _cell.length_b 111.489 _cell.length_c 151.484 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J1W _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,N,O 1 1,2 C,K,L,M,P 2 1,3,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_765 -x+2,-y+1,z -1 0 0 0 -1 0 0 0 1 222.978 111.489 0 3 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 111.489 111.489 0 4 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 111.489 111.489 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 J N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 138 A HIS 138 1_555 D FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc2 A OE1 GLU 142 A GLU 142 1_555 D FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc3 A NE2 HIS 180 A HIS 180 1_555 D FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc4 D FE FE2 . A FE2 201 1_555 E O3 FFQ . A FFQ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc5 D FE FE2 . A FE2 201 1_555 E O1 FFQ . A FFQ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc6 B NE2 HIS 138 B HIS 138 1_555 H FE FE2 . B FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc7 B OE1 GLU 142 B GLU 142 1_555 H FE FE2 . B FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc8 B NE2 HIS 180 B HIS 180 1_555 H FE FE2 . B FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc9 H FE FE2 . B FE2 201 1_555 I O4 FFQ . B FFQ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc10 H FE FE2 . B FE2 201 1_555 I O1 FFQ . B FFQ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc11 C NE2 HIS 138 C HIS 138 1_555 K FE FE2 . C FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc12 C OE1 GLU 142 C GLU 142 1_555 K FE FE2 . C FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc13 C NE2 HIS 180 C HIS 180 1_555 K FE FE2 . C FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc14 K FE FE2 . C FE2 201 1_555 L O2 FFQ . C FFQ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc15 K FE FE2 . C FE2 201 1_555 L O1 FFQ . C FFQ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 145 n n C1 C2 GOL sing 146 n n C1 H11 GOL sing 147 n n C1 H12 GOL sing 148 n n O1 HO1 GOL sing 149 n n C2 O2 GOL sing 150 n n C2 C3 GOL sing 151 n n C2 H2 GOL sing 152 n n O2 HO2 GOL sing 153 n n C3 O3 GOL sing 154 n n C3 H31 GOL sing 155 n n C3 H32 GOL sing 156 n n O3 HO3 GOL sing 157 n n # _atom_sites.entry_id 4J1W _atom_sites.fract_transf_matrix[1][1] 0.008969 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008969 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FE2 A 1 201 201 FE2 FE2 . E 3 FFQ A 1 202 1 FFQ S0H . F 4 GOL A 1 203 2 GOL GOL . G 4 GOL A 1 204 4 GOL GOL . H 2 FE2 B 1 201 202 FE2 FE2 . I 3 FFQ B 1 202 2 FFQ S0H . J 4 GOL B 1 203 1 GOL GOL . K 2 FE2 C 1 201 203 FE2 FE2 . L 3 FFQ C 1 202 3 FFQ S0H . M 4 GOL C 1 203 3 GOL GOL . N 5 HOH A 1 301 8 HOH HOH . N 5 HOH A 2 302 14 HOH HOH . N 5 HOH A 3 303 25 HOH HOH . N 5 HOH A 4 304 30 HOH HOH . N 5 HOH A 5 305 33 HOH HOH . N 5 HOH A 6 306 39 HOH HOH . N 5 HOH A 7 307 44 HOH HOH . N 5 HOH A 8 308 57 HOH HOH . N 5 HOH A 9 309 60 HOH HOH . N 5 HOH A 10 310 62 HOH HOH . N 5 HOH A 11 311 73 HOH HOH . N 5 HOH A 12 312 76 HOH HOH . N 5 HOH A 13 313 88 HOH HOH . O 5 HOH B 1 301 4 HOH HOH . O 5 HOH B 2 302 7 HOH HOH . O 5 HOH B 3 303 9 HOH HOH . O 5 HOH B 4 304 11 HOH HOH . O 5 HOH B 5 305 13 HOH HOH . O 5 HOH B 6 306 51 HOH HOH . O 5 HOH B 7 307 64 HOH HOH . O 5 HOH B 8 308 65 HOH HOH . O 5 HOH B 9 309 66 HOH HOH . O 5 HOH B 10 310 72 HOH HOH . O 5 HOH B 11 311 75 HOH HOH . O 5 HOH B 12 312 77 HOH HOH . O 5 HOH B 13 313 83 HOH HOH . O 5 HOH B 14 314 87 HOH HOH . P 5 HOH C 1 301 1 HOH HOH . P 5 HOH C 2 302 6 HOH HOH . P 5 HOH C 3 303 12 HOH HOH . P 5 HOH C 4 304 21 HOH HOH . P 5 HOH C 5 305 22 HOH HOH . P 5 HOH C 6 306 26 HOH HOH . P 5 HOH C 7 307 31 HOH HOH . P 5 HOH C 8 308 40 HOH HOH . P 5 HOH C 9 309 74 HOH HOH . P 5 HOH C 10 310 78 HOH HOH . P 5 HOH C 11 311 82 HOH HOH . P 5 HOH C 12 312 84 HOH HOH . P 5 HOH C 13 313 85 HOH HOH . P 5 HOH C 14 314 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 109.319 59.923 34.457 1 77.05 ? C1 GOL 204 A 1 HETATM 2 O O1 GOL . . . G 4 110.614 60.381 34.135 1 78.39 ? O1 GOL 204 A 1 HETATM 3 C C2 GOL . . . G 4 108.337 61.087 34.388 1 75.99 ? C2 GOL 204 A 1 HETATM 4 O O2 GOL . . . G 4 108.391 61.819 35.592 1 76.68 ? O2 GOL 204 A 1 HETATM 5 C C3 GOL . . . G 4 106.926 60.549 34.183 1 76.13 ? C3 GOL 204 A 1 HETATM 6 O O3 GOL . . . G 4 106.809 60.021 32.881 1 75.22 ? O3 GOL 204 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #