data_4J2H # _model_server_result.job_id uLDGgVZpZMP6VhQMsc_zRw _model_server_result.datetime_utc '2024-12-26 20:30:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j2h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4J2H # _exptl.entry_id 4J2H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4J2H _cell.length_a 103.875 _cell.length_b 103.875 _cell.length_c 101.165 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J2H _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 103.875 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_655 -x+y+1,y,-z -1 0 0 0 1 0 0 0 -1 103.875 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 134 A ILE 132 1_555 A N MSE 135 A MSE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 135 A MSE 133 1_555 A N ALA 136 A ALA 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C ALA 197 A ALA 195 1_555 A N MSE 198 A MSE 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 A C MSE 198 A MSE 196 1_555 A N THR 199 A THR 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C ARG 211 A ARG 209 1_555 A N MSE 212 A MSE 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 212 A MSE 210 1_555 A N LEU 213 A LEU 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A O TYR 253 A TYR 251 1_555 G NA NA . A NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc2 A O SER 256 A SER 254 1_555 G NA NA . A NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc3 G NA NA . A NA 306 1_555 I O HOH . A HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc4 G NA NA . A NA 306 1_555 I O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 120 n n C1 C2 EDO sing 121 n n C1 H11 EDO sing 122 n n C1 H12 EDO sing 123 n n O1 HO1 EDO sing 124 n n C2 O2 EDO sing 125 n n C2 H21 EDO sing 126 n n C2 H22 EDO sing 127 n n O2 HO2 EDO sing 128 n n # _atom_sites.entry_id 4J2H _atom_sites.fract_transf_matrix[1][1] 0.009627 _atom_sites.fract_transf_matrix[1][2] 0.005558 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009885 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 1 EDO EDO . C 2 EDO A 1 302 2 EDO EDO . D 2 EDO A 1 303 3 EDO EDO . E 2 EDO A 1 304 4 EDO EDO . F 2 EDO A 1 305 5 EDO EDO . G 3 NA A 1 306 1 NA NA . H 4 1PE A 1 307 1 1PE 1PE . I 5 HOH A 1 401 1 HOH HOH . I 5 HOH A 2 402 2 HOH HOH . I 5 HOH A 3 403 3 HOH HOH . I 5 HOH A 4 404 4 HOH HOH . I 5 HOH A 5 405 5 HOH HOH . I 5 HOH A 6 406 6 HOH HOH . I 5 HOH A 7 407 7 HOH HOH . I 5 HOH A 8 408 8 HOH HOH . I 5 HOH A 9 409 9 HOH HOH . I 5 HOH A 10 410 10 HOH HOH . I 5 HOH A 11 411 11 HOH HOH . I 5 HOH A 12 412 12 HOH HOH . I 5 HOH A 13 413 13 HOH HOH . I 5 HOH A 14 414 14 HOH HOH . I 5 HOH A 15 415 15 HOH HOH . I 5 HOH A 16 416 16 HOH HOH . I 5 HOH A 17 417 17 HOH HOH . I 5 HOH A 18 418 18 HOH HOH . I 5 HOH A 19 419 19 HOH HOH . I 5 HOH A 20 420 20 HOH HOH . I 5 HOH A 21 421 21 HOH HOH . I 5 HOH A 22 422 22 HOH HOH . I 5 HOH A 23 423 23 HOH HOH . I 5 HOH A 24 424 24 HOH HOH . I 5 HOH A 25 425 25 HOH HOH . I 5 HOH A 26 426 26 HOH HOH . I 5 HOH A 27 427 27 HOH HOH . I 5 HOH A 28 428 28 HOH HOH . I 5 HOH A 29 429 29 HOH HOH . I 5 HOH A 30 430 30 HOH HOH . I 5 HOH A 31 431 31 HOH HOH . I 5 HOH A 32 432 32 HOH HOH . I 5 HOH A 33 433 33 HOH HOH . I 5 HOH A 34 434 34 HOH HOH . I 5 HOH A 35 435 35 HOH HOH . I 5 HOH A 36 436 36 HOH HOH . I 5 HOH A 37 437 37 HOH HOH . I 5 HOH A 38 438 38 HOH HOH . I 5 HOH A 39 439 39 HOH HOH . I 5 HOH A 40 440 40 HOH HOH . I 5 HOH A 41 441 41 HOH HOH . I 5 HOH A 42 442 42 HOH HOH . I 5 HOH A 43 443 43 HOH HOH . I 5 HOH A 44 444 44 HOH HOH . I 5 HOH A 45 445 45 HOH HOH . I 5 HOH A 46 446 46 HOH HOH . I 5 HOH A 47 447 47 HOH HOH . I 5 HOH A 48 448 48 HOH HOH . I 5 HOH A 49 449 49 HOH HOH . I 5 HOH A 50 450 50 HOH HOH . I 5 HOH A 51 451 51 HOH HOH . I 5 HOH A 52 452 52 HOH HOH . I 5 HOH A 53 453 53 HOH HOH . I 5 HOH A 54 454 54 HOH HOH . I 5 HOH A 55 455 55 HOH HOH . I 5 HOH A 56 456 56 HOH HOH . I 5 HOH A 57 457 57 HOH HOH . I 5 HOH A 58 458 58 HOH HOH . I 5 HOH A 59 459 59 HOH HOH . I 5 HOH A 60 460 60 HOH HOH . I 5 HOH A 61 461 61 HOH HOH . I 5 HOH A 62 462 62 HOH HOH . I 5 HOH A 63 463 63 HOH HOH . I 5 HOH A 64 464 64 HOH HOH . I 5 HOH A 65 465 65 HOH HOH . I 5 HOH A 66 466 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 42.314 -12.34 7.795 1 49 ? C1 EDO 303 A 1 HETATM 2 O O1 EDO . . . D 2 42.753 -10.983 7.895 1 44.29 ? O1 EDO 303 A 1 HETATM 3 C C2 EDO . . . D 2 41.501 -12.519 6.542 1 45.05 ? C2 EDO 303 A 1 HETATM 4 O O2 EDO . . . D 2 40.355 -11.674 6.59 1 49.94 ? O2 EDO 303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 4 #