data_4J2K # _model_server_result.job_id Fky80GViT1bLuJbrZ1zUVA _model_server_result.datetime_utc '2025-01-02 18:44:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4J2K # _exptl.entry_id 4J2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.7 _cell.angle_gamma 90 _cell.entry_id 4J2K _cell.length_a 160.7 _cell.length_b 34.9 _cell.length_c 65.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 A,B,C,D,E,F,G,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 133 A CYS 133 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 B SG CYS 40 B CYS 40 1_555 B SG CYS 86 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf3 B SG CYS 133 B CYS 133 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 186 n y N1 C5 IMD sing 187 n y N1 HN1 IMD sing 188 n n C2 N3 IMD doub 189 n y C2 H2 IMD sing 190 n n N3 C4 IMD sing 191 n y N3 HN3 IMD sing 192 n n C4 C5 IMD doub 193 n y C4 H4 IMD sing 194 n n C5 H5 IMD sing 195 n n # _atom_sites.entry_id 4J2K _atom_sites.fract_transf_matrix[1][1] 0.006223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001986 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028653 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IMD A 1 201 1 IMD IMD . D 3 GOL A 1 202 1 GOL GOL . E 2 IMD B 1 201 2 IMD IMD . F 3 GOL B 1 202 2 GOL GOL . G 4 HOH A 1 301 1 HOH HOH . G 4 HOH A 2 302 2 HOH HOH . G 4 HOH A 3 303 3 HOH HOH . G 4 HOH A 4 304 4 HOH HOH . G 4 HOH A 5 305 5 HOH HOH . G 4 HOH A 6 306 8 HOH HOH . G 4 HOH A 7 307 9 HOH HOH . G 4 HOH A 8 308 10 HOH HOH . G 4 HOH A 9 309 11 HOH HOH . G 4 HOH A 10 310 13 HOH HOH . G 4 HOH A 11 311 14 HOH HOH . G 4 HOH A 12 312 16 HOH HOH . G 4 HOH A 13 313 17 HOH HOH . G 4 HOH A 14 314 19 HOH HOH . G 4 HOH A 15 315 20 HOH HOH . G 4 HOH A 16 316 21 HOH HOH . G 4 HOH A 17 317 22 HOH HOH . G 4 HOH A 18 318 26 HOH HOH . G 4 HOH A 19 319 29 HOH HOH . G 4 HOH A 20 320 31 HOH HOH . G 4 HOH A 21 321 33 HOH HOH . G 4 HOH A 22 322 34 HOH HOH . G 4 HOH A 23 323 40 HOH HOH . G 4 HOH A 24 324 42 HOH HOH . G 4 HOH A 25 325 43 HOH HOH . G 4 HOH A 26 326 44 HOH HOH . G 4 HOH A 27 327 45 HOH HOH . G 4 HOH A 28 328 46 HOH HOH . G 4 HOH A 29 329 47 HOH HOH . G 4 HOH A 30 330 48 HOH HOH . G 4 HOH A 31 331 49 HOH HOH . G 4 HOH A 32 332 50 HOH HOH . G 4 HOH A 33 333 51 HOH HOH . G 4 HOH A 34 334 52 HOH HOH . G 4 HOH A 35 335 53 HOH HOH . G 4 HOH A 36 336 55 HOH HOH . G 4 HOH A 37 337 56 HOH HOH . G 4 HOH A 38 338 59 HOH HOH . G 4 HOH A 39 339 60 HOH HOH . G 4 HOH A 40 340 61 HOH HOH . G 4 HOH A 41 341 63 HOH HOH . G 4 HOH A 42 342 66 HOH HOH . G 4 HOH A 43 343 67 HOH HOH . G 4 HOH A 44 344 68 HOH HOH . G 4 HOH A 45 345 69 HOH HOH . G 4 HOH A 46 346 70 HOH HOH . G 4 HOH A 47 347 72 HOH HOH . G 4 HOH A 48 348 73 HOH HOH . G 4 HOH A 49 349 74 HOH HOH . G 4 HOH A 50 350 75 HOH HOH . G 4 HOH A 51 351 78 HOH HOH . G 4 HOH A 52 352 80 HOH HOH . G 4 HOH A 53 353 82 HOH HOH . G 4 HOH A 54 354 86 HOH HOH . G 4 HOH A 55 355 87 HOH HOH . G 4 HOH A 56 356 89 HOH HOH . G 4 HOH A 57 357 92 HOH HOH . G 4 HOH A 58 358 93 HOH HOH . G 4 HOH A 59 359 94 HOH HOH . G 4 HOH A 60 360 96 HOH HOH . G 4 HOH A 61 361 98 HOH HOH . G 4 HOH A 62 362 99 HOH HOH . G 4 HOH A 63 363 100 HOH HOH . G 4 HOH A 64 364 102 HOH HOH . G 4 HOH A 65 365 104 HOH HOH . G 4 HOH A 66 366 106 HOH HOH . G 4 HOH A 67 367 107 HOH HOH . G 4 HOH A 68 368 108 HOH HOH . G 4 HOH A 69 369 111 HOH HOH . G 4 HOH A 70 370 112 HOH HOH . G 4 HOH A 71 371 114 HOH HOH . G 4 HOH A 72 372 116 HOH HOH . G 4 HOH A 73 373 117 HOH HOH . G 4 HOH A 74 374 118 HOH HOH . G 4 HOH A 75 375 119 HOH HOH . G 4 HOH A 76 376 121 HOH HOH . G 4 HOH A 77 377 122 HOH HOH . G 4 HOH A 78 378 123 HOH HOH . G 4 HOH A 79 379 124 HOH HOH . G 4 HOH A 80 380 126 HOH HOH . G 4 HOH A 81 381 127 HOH HOH . G 4 HOH A 82 382 132 HOH HOH . G 4 HOH A 83 383 135 HOH HOH . G 4 HOH A 84 384 136 HOH HOH . G 4 HOH A 85 385 137 HOH HOH . G 4 HOH A 86 386 138 HOH HOH . G 4 HOH A 87 387 139 HOH HOH . G 4 HOH A 88 388 141 HOH HOH . G 4 HOH A 89 389 142 HOH HOH . G 4 HOH A 90 390 147 HOH HOH . G 4 HOH A 91 391 149 HOH HOH . G 4 HOH A 92 392 150 HOH HOH . G 4 HOH A 93 393 151 HOH HOH . G 4 HOH A 94 394 153 HOH HOH . G 4 HOH A 95 395 158 HOH HOH . G 4 HOH A 96 396 160 HOH HOH . G 4 HOH A 97 397 161 HOH HOH . G 4 HOH A 98 398 162 HOH HOH . G 4 HOH A 99 399 163 HOH HOH . G 4 HOH A 100 400 164 HOH HOH . G 4 HOH A 101 401 165 HOH HOH . G 4 HOH A 102 402 167 HOH HOH . G 4 HOH A 103 403 168 HOH HOH . G 4 HOH A 104 404 170 HOH HOH . G 4 HOH A 105 405 172 HOH HOH . G 4 HOH A 106 406 175 HOH HOH . G 4 HOH A 107 407 177 HOH HOH . G 4 HOH A 108 408 178 HOH HOH . G 4 HOH A 109 409 179 HOH HOH . G 4 HOH A 110 410 181 HOH HOH . G 4 HOH A 111 411 182 HOH HOH . G 4 HOH A 112 412 183 HOH HOH . G 4 HOH A 113 413 184 HOH HOH . G 4 HOH A 114 414 189 HOH HOH . G 4 HOH A 115 415 190 HOH HOH . G 4 HOH A 116 416 191 HOH HOH . G 4 HOH A 117 417 192 HOH HOH . G 4 HOH A 118 418 193 HOH HOH . G 4 HOH A 119 419 194 HOH HOH . G 4 HOH A 120 420 195 HOH HOH . G 4 HOH A 121 421 196 HOH HOH . G 4 HOH A 122 422 197 HOH HOH . G 4 HOH A 123 423 198 HOH HOH . G 4 HOH A 124 424 199 HOH HOH . G 4 HOH A 125 425 200 HOH HOH . G 4 HOH A 126 426 201 HOH HOH . G 4 HOH A 127 427 202 HOH HOH . G 4 HOH A 128 428 203 HOH HOH . G 4 HOH A 129 429 204 HOH HOH . G 4 HOH A 130 430 206 HOH HOH . G 4 HOH A 131 431 207 HOH HOH . G 4 HOH A 132 432 216 HOH HOH . G 4 HOH A 133 433 217 HOH HOH . G 4 HOH A 134 434 218 HOH HOH . G 4 HOH A 135 435 219 HOH HOH . G 4 HOH A 136 436 221 HOH HOH . G 4 HOH A 137 437 224 HOH HOH . G 4 HOH A 138 438 225 HOH HOH . G 4 HOH A 139 439 228 HOH HOH . H 4 HOH B 1 301 6 HOH HOH . H 4 HOH B 2 302 7 HOH HOH . H 4 HOH B 3 303 12 HOH HOH . H 4 HOH B 4 304 15 HOH HOH . H 4 HOH B 5 305 18 HOH HOH . H 4 HOH B 6 306 23 HOH HOH . H 4 HOH B 7 307 24 HOH HOH . H 4 HOH B 8 308 25 HOH HOH . H 4 HOH B 9 309 27 HOH HOH . H 4 HOH B 10 310 28 HOH HOH . H 4 HOH B 11 311 30 HOH HOH . H 4 HOH B 12 312 32 HOH HOH . H 4 HOH B 13 313 35 HOH HOH . H 4 HOH B 14 314 36 HOH HOH . H 4 HOH B 15 315 37 HOH HOH . H 4 HOH B 16 316 38 HOH HOH . H 4 HOH B 17 317 39 HOH HOH . H 4 HOH B 18 318 41 HOH HOH . H 4 HOH B 19 319 54 HOH HOH . H 4 HOH B 20 320 57 HOH HOH . H 4 HOH B 21 321 58 HOH HOH . H 4 HOH B 22 322 62 HOH HOH . H 4 HOH B 23 323 64 HOH HOH . H 4 HOH B 24 324 65 HOH HOH . H 4 HOH B 25 325 71 HOH HOH . H 4 HOH B 26 326 76 HOH HOH . H 4 HOH B 27 327 77 HOH HOH . H 4 HOH B 28 328 79 HOH HOH . H 4 HOH B 29 329 81 HOH HOH . H 4 HOH B 30 330 83 HOH HOH . H 4 HOH B 31 331 84 HOH HOH . H 4 HOH B 32 332 85 HOH HOH . H 4 HOH B 33 333 88 HOH HOH . H 4 HOH B 34 334 90 HOH HOH . H 4 HOH B 35 335 91 HOH HOH . H 4 HOH B 36 336 95 HOH HOH . H 4 HOH B 37 337 97 HOH HOH . H 4 HOH B 38 338 101 HOH HOH . H 4 HOH B 39 339 103 HOH HOH . H 4 HOH B 40 340 105 HOH HOH . H 4 HOH B 41 341 109 HOH HOH . H 4 HOH B 42 342 110 HOH HOH . H 4 HOH B 43 343 113 HOH HOH . H 4 HOH B 44 344 115 HOH HOH . H 4 HOH B 45 345 120 HOH HOH . H 4 HOH B 46 346 125 HOH HOH . H 4 HOH B 47 347 128 HOH HOH . H 4 HOH B 48 348 129 HOH HOH . H 4 HOH B 49 349 130 HOH HOH . H 4 HOH B 50 350 131 HOH HOH . H 4 HOH B 51 351 133 HOH HOH . H 4 HOH B 52 352 134 HOH HOH . H 4 HOH B 53 353 140 HOH HOH . H 4 HOH B 54 354 143 HOH HOH . H 4 HOH B 55 355 144 HOH HOH . H 4 HOH B 56 356 145 HOH HOH . H 4 HOH B 57 357 146 HOH HOH . H 4 HOH B 58 358 148 HOH HOH . H 4 HOH B 59 359 152 HOH HOH . H 4 HOH B 60 360 154 HOH HOH . H 4 HOH B 61 361 155 HOH HOH . H 4 HOH B 62 362 156 HOH HOH . H 4 HOH B 63 363 157 HOH HOH . H 4 HOH B 64 364 159 HOH HOH . H 4 HOH B 65 365 166 HOH HOH . H 4 HOH B 66 366 169 HOH HOH . H 4 HOH B 67 367 171 HOH HOH . H 4 HOH B 68 368 173 HOH HOH . H 4 HOH B 69 369 174 HOH HOH . H 4 HOH B 70 370 176 HOH HOH . H 4 HOH B 71 371 180 HOH HOH . H 4 HOH B 72 372 185 HOH HOH . H 4 HOH B 73 373 186 HOH HOH . H 4 HOH B 74 374 187 HOH HOH . H 4 HOH B 75 375 188 HOH HOH . H 4 HOH B 76 376 205 HOH HOH . H 4 HOH B 77 377 208 HOH HOH . H 4 HOH B 78 378 209 HOH HOH . H 4 HOH B 79 379 210 HOH HOH . H 4 HOH B 80 380 211 HOH HOH . H 4 HOH B 81 381 212 HOH HOH . H 4 HOH B 82 382 213 HOH HOH . H 4 HOH B 83 383 214 HOH HOH . H 4 HOH B 84 384 215 HOH HOH . H 4 HOH B 85 385 220 HOH HOH . H 4 HOH B 86 386 222 HOH HOH . H 4 HOH B 87 387 223 HOH HOH . H 4 HOH B 88 388 226 HOH HOH . H 4 HOH B 89 389 227 HOH HOH . H 4 HOH B 90 390 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . C 2 -14.886 31.209 -28.815 1 45 ? N1 IMD 201 A 1 HETATM 2 C C2 IMD . . . C 2 -14.641 31.661 -30.066 1 46.61 ? C2 IMD 201 A 1 HETATM 3 N N3 IMD . . . C 2 -13.328 31.468 -30.338 1 45.42 ? N3 IMD 201 A 1 HETATM 4 C C4 IMD . . . C 2 -12.733 30.899 -29.261 1 27.94 ? C4 IMD 201 A 1 HETATM 5 C C5 IMD . . . C 2 -13.722 30.743 -28.301 1 43.43 ? C5 IMD 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 5 #