data_4J2S # _model_server_result.job_id i8DnpZ4XvtWzBuNnSpl-4w _model_server_result.datetime_utc '2025-09-10 00:07:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j2s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":203}' # _entry.id 4J2S # _exptl.entry_id 4J2S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J2S _cell.length_a 33.737 _cell.length_b 56.458 _cell.length_c 61.279 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J2S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.comp_id_2 MAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B MAG 1 B 1 MAG ? 282 C2 2 n B GAL 2 B 2 GAL ? 282 C1 # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id O4 _struct_conn.ptnr1_label_comp_id MAG _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id MAG _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id GAL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id GAL _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.405 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 4J2S _atom_sites.fract_transf_matrix[1][1] 0.029641 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BEN A 1 203 1 BEN UNL . D 4 HOH A 1 301 11 HOH HOH . D 4 HOH A 2 302 17 HOH HOH . D 4 HOH A 3 303 18 HOH HOH . D 4 HOH A 4 304 19 HOH HOH . D 4 HOH A 5 305 22 HOH HOH . D 4 HOH A 6 306 24 HOH HOH . D 4 HOH A 7 307 26 HOH HOH . D 4 HOH A 8 308 27 HOH HOH . D 4 HOH A 9 309 31 HOH HOH . D 4 HOH A 10 310 32 HOH HOH . D 4 HOH A 11 311 36 HOH HOH . D 4 HOH A 12 312 39 HOH HOH . D 4 HOH A 13 313 40 HOH HOH . D 4 HOH A 14 314 41 HOH HOH . D 4 HOH A 15 315 43 HOH HOH . D 4 HOH A 16 316 44 HOH HOH . D 4 HOH A 17 317 45 HOH HOH . D 4 HOH A 18 318 47 HOH HOH . D 4 HOH A 19 319 49 HOH HOH . D 4 HOH A 20 320 52 HOH HOH . D 4 HOH A 21 321 55 HOH HOH . D 4 HOH A 22 322 57 HOH HOH . D 4 HOH A 23 323 60 HOH HOH . D 4 HOH A 24 324 61 HOH HOH . D 4 HOH A 25 325 65 HOH HOH . D 4 HOH A 26 326 67 HOH HOH . D 4 HOH A 27 327 68 HOH HOH . D 4 HOH A 28 328 70 HOH HOH . D 4 HOH A 29 329 71 HOH HOH . D 4 HOH A 30 330 72 HOH HOH . D 4 HOH A 31 331 73 HOH HOH . D 4 HOH A 32 332 74 HOH HOH . D 4 HOH A 33 333 75 HOH HOH . D 4 HOH A 34 334 76 HOH HOH . D 4 HOH A 35 335 77 HOH HOH . D 4 HOH A 36 336 78 HOH HOH . D 4 HOH A 37 337 79 HOH HOH . D 4 HOH A 38 338 81 HOH HOH . D 4 HOH A 39 339 82 HOH HOH . D 4 HOH A 40 340 83 HOH HOH . D 4 HOH A 41 341 84 HOH HOH . D 4 HOH A 42 342 88 HOH HOH . D 4 HOH A 43 343 90 HOH HOH . D 4 HOH A 44 344 91 HOH HOH . D 4 HOH A 45 345 98 HOH HOH . D 4 HOH A 46 346 99 HOH HOH . D 4 HOH A 47 347 100 HOH HOH . D 4 HOH A 48 348 101 HOH HOH . D 4 HOH A 49 349 102 HOH HOH . D 4 HOH A 50 350 103 HOH HOH . D 4 HOH A 51 351 104 HOH HOH . D 4 HOH A 52 352 105 HOH HOH . D 4 HOH A 53 353 106 HOH HOH . D 4 HOH A 54 354 108 HOH HOH . D 4 HOH A 55 355 109 HOH HOH . D 4 HOH A 56 356 111 HOH HOH . D 4 HOH A 57 357 112 HOH HOH . D 4 HOH A 58 358 113 HOH HOH . D 4 HOH A 59 359 114 HOH HOH . D 4 HOH A 60 360 115 HOH HOH . D 4 HOH A 61 361 116 HOH HOH . D 4 HOH A 62 362 117 HOH HOH . D 4 HOH A 63 363 118 HOH HOH . D 4 HOH A 64 364 119 HOH HOH . D 4 HOH A 65 365 120 HOH HOH . D 4 HOH A 66 366 122 HOH HOH . D 4 HOH A 67 367 123 HOH HOH . D 4 HOH A 68 368 124 HOH HOH . D 4 HOH A 69 369 125 HOH HOH . D 4 HOH A 70 370 127 HOH HOH . D 4 HOH A 71 371 129 HOH HOH . D 4 HOH A 72 372 131 HOH HOH . D 4 HOH A 73 373 132 HOH HOH . D 4 HOH A 74 374 133 HOH HOH . D 4 HOH A 75 375 134 HOH HOH . D 4 HOH A 76 376 138 HOH HOH . D 4 HOH A 77 377 139 HOH HOH . D 4 HOH A 78 378 140 HOH HOH . D 4 HOH A 79 379 141 HOH HOH . D 4 HOH A 80 380 143 HOH HOH . D 4 HOH A 81 381 144 HOH HOH . D 4 HOH A 82 382 145 HOH HOH . D 4 HOH A 83 383 148 HOH HOH . D 4 HOH A 84 384 151 HOH HOH . D 4 HOH A 85 385 152 HOH HOH . D 4 HOH A 86 386 153 HOH HOH . D 4 HOH A 87 387 155 HOH HOH . D 4 HOH A 88 388 156 HOH HOH . D 4 HOH A 89 389 157 HOH HOH . D 4 HOH A 90 390 159 HOH HOH . D 4 HOH A 91 391 160 HOH HOH . D 4 HOH A 92 392 161 HOH HOH . D 4 HOH A 93 393 162 HOH HOH . D 4 HOH A 94 394 163 HOH HOH . D 4 HOH A 95 395 164 HOH HOH . D 4 HOH A 96 396 165 HOH HOH . D 4 HOH A 97 397 168 HOH HOH . D 4 HOH A 98 398 170 HOH HOH . D 4 HOH A 99 399 171 HOH HOH . D 4 HOH A 100 400 173 HOH HOH . D 4 HOH A 101 401 174 HOH HOH . D 4 HOH A 102 402 175 HOH HOH . D 4 HOH A 103 403 176 HOH HOH . D 4 HOH A 104 404 177 HOH HOH . D 4 HOH A 105 405 178 HOH HOH . D 4 HOH A 106 406 179 HOH HOH . D 4 HOH A 107 407 180 HOH HOH . D 4 HOH A 108 408 181 HOH HOH . D 4 HOH A 109 409 183 HOH HOH . D 4 HOH A 110 410 185 HOH HOH . D 4 HOH A 111 411 186 HOH HOH . D 4 HOH A 112 412 188 HOH HOH . D 4 HOH A 113 413 190 HOH HOH . D 4 HOH A 114 414 191 HOH HOH . D 4 HOH A 115 415 192 HOH HOH . D 4 HOH A 116 416 193 HOH HOH . D 4 HOH A 117 417 195 HOH HOH . D 4 HOH A 118 418 196 HOH HOH . D 4 HOH A 119 419 199 HOH HOH . D 4 HOH A 120 420 200 HOH HOH . D 4 HOH A 121 421 201 HOH HOH . D 4 HOH A 122 422 204 HOH HOH . D 4 HOH A 123 423 205 HOH HOH . D 4 HOH A 124 424 207 HOH HOH . D 4 HOH A 125 425 209 HOH HOH . D 4 HOH A 126 426 210 HOH HOH . D 4 HOH A 127 427 211 HOH HOH . D 4 HOH A 128 428 213 HOH HOH . D 4 HOH A 129 429 214 HOH HOH . D 4 HOH A 130 430 218 HOH HOH . D 4 HOH A 131 431 219 HOH HOH . D 4 HOH A 132 432 220 HOH HOH . D 4 HOH A 133 433 221 HOH HOH . D 4 HOH A 134 434 222 HOH HOH . D 4 HOH A 135 435 224 HOH HOH . D 4 HOH A 136 436 225 HOH HOH . D 4 HOH A 137 437 227 HOH HOH . D 4 HOH A 138 438 228 HOH HOH . D 4 HOH A 139 439 230 HOH HOH . D 4 HOH A 140 440 231 HOH HOH . D 4 HOH A 141 441 232 HOH HOH . D 4 HOH A 142 442 233 HOH HOH . D 4 HOH A 143 443 234 HOH HOH . D 4 HOH A 144 444 235 HOH HOH . D 4 HOH A 145 445 236 HOH HOH . D 4 HOH A 146 446 237 HOH HOH . D 4 HOH A 147 447 238 HOH HOH . D 4 HOH A 148 448 239 HOH HOH . D 4 HOH A 149 449 240 HOH HOH . D 4 HOH A 150 450 242 HOH HOH . D 4 HOH A 151 451 245 HOH HOH . D 4 HOH A 152 452 248 HOH HOH . D 4 HOH A 153 453 251 HOH HOH . D 4 HOH A 154 454 252 HOH HOH . D 4 HOH A 155 455 253 HOH HOH . D 4 HOH A 156 456 254 HOH HOH . D 4 HOH A 157 457 255 HOH HOH . D 4 HOH A 158 458 256 HOH HOH . D 4 HOH A 159 459 257 HOH HOH . D 4 HOH A 160 460 259 HOH HOH . D 4 HOH A 161 461 260 HOH HOH . D 4 HOH A 162 462 262 HOH HOH . D 4 HOH A 163 463 263 HOH HOH . D 4 HOH A 164 464 264 HOH HOH . D 4 HOH A 165 465 266 HOH HOH . D 4 HOH A 166 466 267 HOH HOH . D 4 HOH A 167 467 271 HOH HOH . D 4 HOH A 168 468 272 HOH HOH . D 4 HOH A 169 469 274 HOH HOH . D 4 HOH A 170 470 275 HOH HOH . D 4 HOH A 171 471 276 HOH HOH . D 4 HOH A 172 472 278 HOH HOH . D 4 HOH A 173 473 279 HOH HOH . D 4 HOH A 174 474 280 HOH HOH . D 4 HOH A 175 475 281 HOH HOH . D 4 HOH A 176 476 1 HOH HOH . D 4 HOH A 177 477 2 HOH HOH . D 4 HOH A 178 478 4 HOH HOH . D 4 HOH A 179 479 5 HOH HOH . D 4 HOH A 180 480 7 HOH HOH . D 4 HOH A 181 481 11 HOH HOH . D 4 HOH A 182 482 12 HOH HOH . D 4 HOH A 183 483 15 HOH HOH . D 4 HOH A 184 484 16 HOH HOH . D 4 HOH A 185 485 17 HOH HOH . D 4 HOH A 186 486 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . C 3 8.75 3.872 -2.022 1 16.02 ? C1 BEN 203 A 1 HETATM 2 C C2 BEN . . . C 3 9.674 2.899 -1.633 1 19.12 ? C2 BEN 203 A 1 HETATM 3 C C3 BEN . . . C 3 9.467 1.585 -1.976 1 20.76 ? C3 BEN 203 A 1 HETATM 4 C C4 BEN . . . C 3 8.332 1.236 -2.658 1 16.98 ? C4 BEN 203 A 1 HETATM 5 C C5 BEN . . . C 3 7.388 2.189 -3.002 1 16.9 ? C5 BEN 203 A 1 HETATM 6 C C6 BEN . . . C 3 7.581 3.521 -2.671 1 15.93 ? C6 BEN 203 A 1 HETATM 7 C C BEN . . . C 3 8.944 5.307 -1.672 1 15.28 ? C BEN 203 A 1 HETATM 8 N N1 BEN . . . C 3 7.988 6.13 -2.033 1 15.57 ? N1 BEN 203 A 1 HETATM 9 N N2 BEN . . . C 3 10.031 5.745 -1.176 1 15.56 ? N2 BEN 203 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #