data_4J3J # _model_server_result.job_id 7Cd85G-SR9CRn7pz2QGMWQ _model_server_result.datetime_utc '2024-11-23 12:16:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j3j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 4J3J # _exptl.entry_id 4J3J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 434.379 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butyl]-6-(trifluoromethyl)-3,4-dihydropyrrolo[1,2-a]pyrazine-2(1H)-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4J3J _cell.length_a 79.648 _cell.length_b 79.648 _cell.length_c 292.267 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J3J _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 290 A CYS 328 1_555 A SG CYS 301 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 347 A CYS 385 1_555 A SG CYS 356 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 406 A CYS 444 1_555 A SG CYS 409 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 416 A CYS 454 1_555 A SG CYS 434 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 611 A CYS 649 1_555 A SG CYS 724 A CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 290 B CYS 328 1_555 B SG CYS 301 B CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 347 B CYS 385 1_555 B SG CYS 356 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 B SG CYS 406 B CYS 444 1_555 B SG CYS 409 B CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 B SG CYS 416 B CYS 454 1_555 B SG CYS 434 B CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 B SG CYS 611 B CYS 649 1_555 B SG CYS 724 B CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C19 H20 F6 N4 O' _chem_comp.formula_weight 434.379 _chem_comp.id D3C _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butyl]-6-(trifluoromethyl)-3,4-dihydropyrrolo[1,2-a]pyrazine-2(1H)-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FBD CBA D3C sing 83 n n CBA FBB D3C sing 84 n n CBA FBC D3C sing 85 n n CBA CAX D3C sing 86 n n CAY CAX D3C doub 87 n y CAY CAZ D3C sing 88 n y CAX NAW D3C sing 89 n y CAZ CAV D3C doub 90 n y NAW CAV D3C sing 91 n y NAW CAT D3C sing 92 n n CAV CAU D3C sing 93 n n CAT CAS D3C sing 94 n n CAU NAQ D3C sing 95 n n CAS NAQ D3C sing 96 n n NAQ CAP D3C sing 97 n n OAR CAP D3C doub 98 n n CAP NAO D3C sing 99 n n NAO CAN D3C sing 100 n n CAN CAL D3C sing 101 n n CAL CAK D3C sing 102 n n CAK NAM D3C sing 103 n n CAK CAJ D3C sing 104 n n CAJ CAD D3C sing 105 n n CAC CAD D3C sing 106 n y CAC CAB D3C doub 107 n y FAI CAB D3C sing 108 n n CAD CAE D3C doub 109 n y CAB CAA D3C sing 110 n y CAE FAG D3C sing 111 n n CAE CAF D3C sing 112 n y CAA CAF D3C doub 113 n y CAA FAH D3C sing 114 n n CAY H1 D3C sing 115 n n CAZ H2 D3C sing 116 n n CAU H3 D3C sing 117 n n CAU H4 D3C sing 118 n n CAT H5 D3C sing 119 n n CAT H6 D3C sing 120 n n CAS H7 D3C sing 121 n n CAS H8 D3C sing 122 n n NAO H9 D3C sing 123 n n CAN H10 D3C sing 124 n n CAN H11 D3C sing 125 n n CAL H12 D3C sing 126 n n CAL H13 D3C sing 127 n n CAK H14 D3C sing 128 n n NAM H15 D3C sing 129 n n NAM H16 D3C sing 130 n n CAJ H18 D3C sing 131 n n CAJ H19 D3C sing 132 n n CAC H20 D3C sing 133 n n CAF H21 D3C sing 134 n n # _atom_sites.entry_id 4J3J _atom_sites.fract_transf_matrix[1][1] 0.012555 _atom_sites.fract_transf_matrix[1][2] 0.007249 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014498 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 D3C A 1 801 820 D3C DC3 . D 2 D3C B 1 801 820 D3C DC3 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F FBB D3C . . . D 2 -11.216 5.351 31.896 1 137.37 ? FBB D3C 801 B 1 HETATM 2 C CBA D3C . . . D 2 -12.524 5.535 32.031 1 135.98 ? CBA D3C 801 B 1 HETATM 3 F FBC D3C . . . D 2 -13.163 4.388 31.816 1 137.52 ? FBC D3C 801 B 1 HETATM 4 F FBD D3C . . . D 2 -12.785 5.963 33.263 1 139.51 ? FBD D3C 801 B 1 HETATM 5 C CAX D3C . . . D 2 -12.997 6.567 31.004 1 131.95 ? CAX D3C 801 B 1 HETATM 6 C CAY D3C . . . D 2 -13.589 7.724 31.301 1 131.29 ? CAY D3C 801 B 1 HETATM 7 C CAZ D3C . . . D 2 -13.862 8.365 30.161 1 128.64 ? CAZ D3C 801 B 1 HETATM 8 C CAV D3C . . . D 2 -13.452 7.611 29.143 1 126.11 ? CAV D3C 801 B 1 HETATM 9 C CAU D3C . . . D 2 -13.509 7.867 27.651 1 123.74 ? CAU D3C 801 B 1 HETATM 10 N NAW D3C . . . D 2 -12.874 6.442 29.623 1 126.88 ? NAW D3C 801 B 1 HETATM 11 C CAT D3C . . . D 2 -12.312 5.393 28.709 1 124.65 ? CAT D3C 801 B 1 HETATM 12 C CAS D3C . . . D 2 -11.863 5.942 27.327 1 121.67 ? CAS D3C 801 B 1 HETATM 13 N NAQ D3C . . . D 2 -12.202 7.385 27.158 1 120.4 ? NAQ D3C 801 B 1 HETATM 14 C CAP D3C . . . D 2 -11.344 8.274 26.641 1 116.52 ? CAP D3C 801 B 1 HETATM 15 O OAR D3C . . . D 2 -11.722 9.445 26.577 1 123.47 ? OAR D3C 801 B 1 HETATM 16 N NAO D3C . . . D 2 -10.148 7.885 26.191 1 108.1 ? NAO D3C 801 B 1 HETATM 17 C CAN D3C . . . D 2 -9.164 8.825 25.614 1 103.09 ? CAN D3C 801 B 1 HETATM 18 C CAL D3C . . . D 2 -9.695 9.5 24.338 1 96.93 ? CAL D3C 801 B 1 HETATM 19 C CAK D3C . . . D 2 -8.562 10.003 23.441 1 93.52 ? CAK D3C 801 B 1 HETATM 20 N NAM D3C . . . D 2 -9.141 10.793 22.347 1 95.42 ? NAM D3C 801 B 1 HETATM 21 C CAJ D3C . . . D 2 -7.819 8.792 22.875 1 90.68 ? CAJ D3C 801 B 1 HETATM 22 C CAD D3C . . . D 2 -6.732 9.139 21.859 1 87.33 ? CAD D3C 801 B 1 HETATM 23 C CAC D3C . . . D 2 -5.43 9.285 22.337 1 85.79 ? CAC D3C 801 B 1 HETATM 24 C CAB D3C . . . D 2 -4.39 9.59 21.462 1 84.35 ? CAB D3C 801 B 1 HETATM 25 F FAI D3C . . . D 2 -3.132 9.742 21.917 1 85.17 ? FAI D3C 801 B 1 HETATM 26 C CAA D3C . . . D 2 -4.642 9.744 20.106 1 83.69 ? CAA D3C 801 B 1 HETATM 27 F FAH D3C . . . D 2 -3.623 10.036 19.279 1 82.36 ? FAH D3C 801 B 1 HETATM 28 C CAF D3C . . . D 2 -5.935 9.593 19.614 1 84.54 ? CAF D3C 801 B 1 HETATM 29 C CAE D3C . . . D 2 -6.974 9.289 20.492 1 86.43 ? CAE D3C 801 B 1 HETATM 30 F FAG D3C . . . D 2 -8.229 9.15 20.014 1 86.69 ? FAG D3C 801 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 613 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #