data_4J3K # _model_server_result.job_id xy7NgrwmNQXSBeMSdIhJuA _model_server_result.datetime_utc '2024-11-24 00:21:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4J3K # _exptl.entry_id 4J3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4J3K _cell.length_a 81.57 _cell.length_b 81.57 _cell.length_c 42.55 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 302 n n C C2 TRS sing 303 n n C C3 TRS sing 304 n n C N TRS sing 305 n n C1 O1 TRS sing 306 n n C1 H11 TRS sing 307 n n C1 H12 TRS sing 308 n n C2 O2 TRS sing 309 n n C2 H21 TRS sing 310 n n C2 H22 TRS sing 311 n n C3 O3 TRS sing 312 n n C3 H31 TRS sing 313 n n C3 H32 TRS sing 314 n n N HN1 TRS sing 315 n n N HN2 TRS sing 316 n n N HN3 TRS sing 317 n n O1 HO1 TRS sing 318 n n O2 HO2 TRS sing 319 n n O3 HO3 TRS sing 320 n n # _atom_sites.entry_id 4J3K _atom_sites.fract_transf_matrix[1][1] 0.012259 _atom_sites.fract_transf_matrix[1][2] 0.007078 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014156 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 201 359 TRS MOL . C 3 HOH A 1 301 201 HOH HOH . C 3 HOH A 2 302 202 HOH HOH . C 3 HOH A 3 303 203 HOH HOH . C 3 HOH A 4 304 204 HOH HOH . C 3 HOH A 5 305 205 HOH HOH . C 3 HOH A 6 306 206 HOH HOH . C 3 HOH A 7 307 207 HOH HOH . C 3 HOH A 8 308 208 HOH HOH . C 3 HOH A 9 309 209 HOH HOH . C 3 HOH A 10 310 210 HOH HOH . C 3 HOH A 11 311 211 HOH HOH . C 3 HOH A 12 312 212 HOH HOH . C 3 HOH A 13 313 213 HOH HOH . C 3 HOH A 14 314 214 HOH HOH . C 3 HOH A 15 315 215 HOH HOH . C 3 HOH A 16 316 216 HOH HOH . C 3 HOH A 17 317 217 HOH HOH . C 3 HOH A 18 318 218 HOH HOH . C 3 HOH A 19 319 219 HOH HOH . C 3 HOH A 20 320 220 HOH HOH . C 3 HOH A 21 321 221 HOH HOH . C 3 HOH A 22 322 222 HOH HOH . C 3 HOH A 23 323 223 HOH HOH . C 3 HOH A 24 324 224 HOH HOH . C 3 HOH A 25 325 225 HOH HOH . C 3 HOH A 26 326 226 HOH HOH . C 3 HOH A 27 327 227 HOH HOH . C 3 HOH A 28 328 228 HOH HOH . C 3 HOH A 29 329 229 HOH HOH . C 3 HOH A 30 330 230 HOH HOH . C 3 HOH A 31 331 231 HOH HOH . C 3 HOH A 32 332 232 HOH HOH . C 3 HOH A 33 333 233 HOH HOH . C 3 HOH A 34 334 234 HOH HOH . C 3 HOH A 35 335 235 HOH HOH . C 3 HOH A 36 336 236 HOH HOH . C 3 HOH A 37 337 237 HOH HOH . C 3 HOH A 38 338 238 HOH HOH . C 3 HOH A 39 339 239 HOH HOH . C 3 HOH A 40 340 240 HOH HOH . C 3 HOH A 41 341 241 HOH HOH . C 3 HOH A 42 342 242 HOH HOH . C 3 HOH A 43 343 243 HOH HOH . C 3 HOH A 44 344 244 HOH HOH . C 3 HOH A 45 345 245 HOH HOH . C 3 HOH A 46 346 246 HOH HOH . C 3 HOH A 47 347 247 HOH HOH . C 3 HOH A 48 348 248 HOH HOH . C 3 HOH A 49 349 249 HOH HOH . C 3 HOH A 50 350 250 HOH HOH . C 3 HOH A 51 351 251 HOH HOH . C 3 HOH A 52 352 252 HOH HOH . C 3 HOH A 53 353 253 HOH HOH . C 3 HOH A 54 354 254 HOH HOH . C 3 HOH A 55 355 255 HOH HOH . C 3 HOH A 56 356 256 HOH HOH . C 3 HOH A 57 357 257 HOH HOH . C 3 HOH A 58 358 258 HOH HOH . C 3 HOH A 59 359 259 HOH HOH . C 3 HOH A 60 360 260 HOH HOH . C 3 HOH A 61 361 261 HOH HOH . C 3 HOH A 62 362 262 HOH HOH . C 3 HOH A 63 363 263 HOH HOH . C 3 HOH A 64 364 264 HOH HOH . C 3 HOH A 65 365 265 HOH HOH . C 3 HOH A 66 366 266 HOH HOH . C 3 HOH A 67 367 267 HOH HOH . C 3 HOH A 68 368 268 HOH HOH . C 3 HOH A 69 369 269 HOH HOH . C 3 HOH A 70 370 270 HOH HOH . C 3 HOH A 71 371 271 HOH HOH . C 3 HOH A 72 372 272 HOH HOH . C 3 HOH A 73 373 273 HOH HOH . C 3 HOH A 74 374 274 HOH HOH . C 3 HOH A 75 375 275 HOH HOH . C 3 HOH A 76 376 276 HOH HOH . C 3 HOH A 77 377 277 HOH HOH . C 3 HOH A 78 378 278 HOH HOH . C 3 HOH A 79 379 279 HOH HOH . C 3 HOH A 80 380 280 HOH HOH . C 3 HOH A 81 381 281 HOH HOH . C 3 HOH A 82 382 282 HOH HOH . C 3 HOH A 83 383 283 HOH HOH . C 3 HOH A 84 384 284 HOH HOH . C 3 HOH A 85 385 285 HOH HOH . C 3 HOH A 86 386 286 HOH HOH . C 3 HOH A 87 387 287 HOH HOH . C 3 HOH A 88 388 288 HOH HOH . C 3 HOH A 89 389 289 HOH HOH . C 3 HOH A 90 390 290 HOH HOH . C 3 HOH A 91 391 291 HOH HOH . C 3 HOH A 92 392 292 HOH HOH . C 3 HOH A 93 393 293 HOH HOH . C 3 HOH A 94 394 294 HOH HOH . C 3 HOH A 95 395 295 HOH HOH . C 3 HOH A 96 396 296 HOH HOH . C 3 HOH A 97 397 297 HOH HOH . C 3 HOH A 98 398 298 HOH HOH . C 3 HOH A 99 399 299 HOH HOH . C 3 HOH A 100 400 300 HOH HOH . C 3 HOH A 101 401 301 HOH HOH . C 3 HOH A 102 402 302 HOH HOH . C 3 HOH A 103 403 303 HOH HOH . C 3 HOH A 104 404 304 HOH HOH . C 3 HOH A 105 405 305 HOH HOH . C 3 HOH A 106 406 306 HOH HOH . C 3 HOH A 107 407 307 HOH HOH . C 3 HOH A 108 408 308 HOH HOH . C 3 HOH A 109 409 309 HOH HOH . C 3 HOH A 110 410 310 HOH HOH . C 3 HOH A 111 411 311 HOH HOH . C 3 HOH A 112 412 312 HOH HOH . C 3 HOH A 113 413 313 HOH HOH . C 3 HOH A 114 414 314 HOH HOH . C 3 HOH A 115 415 315 HOH HOH . C 3 HOH A 116 416 316 HOH HOH . C 3 HOH A 117 417 317 HOH HOH . C 3 HOH A 118 418 318 HOH HOH . C 3 HOH A 119 419 319 HOH HOH . C 3 HOH A 120 420 320 HOH HOH . C 3 HOH A 121 421 321 HOH HOH . C 3 HOH A 122 422 322 HOH HOH . C 3 HOH A 123 423 323 HOH HOH . C 3 HOH A 124 424 324 HOH HOH . C 3 HOH A 125 425 325 HOH HOH . C 3 HOH A 126 426 326 HOH HOH . C 3 HOH A 127 427 327 HOH HOH . C 3 HOH A 128 428 328 HOH HOH . C 3 HOH A 129 429 329 HOH HOH . C 3 HOH A 130 430 330 HOH HOH . C 3 HOH A 131 431 331 HOH HOH . C 3 HOH A 132 432 332 HOH HOH . C 3 HOH A 133 433 333 HOH HOH . C 3 HOH A 134 434 334 HOH HOH . C 3 HOH A 135 435 335 HOH HOH . C 3 HOH A 136 436 336 HOH HOH . C 3 HOH A 137 437 337 HOH HOH . C 3 HOH A 138 438 338 HOH HOH . C 3 HOH A 139 439 339 HOH HOH . C 3 HOH A 140 440 340 HOH HOH . C 3 HOH A 141 441 341 HOH HOH . C 3 HOH A 142 442 342 HOH HOH . C 3 HOH A 143 443 343 HOH HOH . C 3 HOH A 144 444 344 HOH HOH . C 3 HOH A 145 445 345 HOH HOH . C 3 HOH A 146 446 346 HOH HOH . C 3 HOH A 147 447 347 HOH HOH . C 3 HOH A 148 448 348 HOH HOH . C 3 HOH A 149 449 349 HOH HOH . C 3 HOH A 150 450 350 HOH HOH . C 3 HOH A 151 451 352 HOH HOH . C 3 HOH A 152 452 353 HOH HOH . C 3 HOH A 153 453 354 HOH HOH . C 3 HOH A 154 454 355 HOH HOH . C 3 HOH A 155 455 356 HOH HOH . C 3 HOH A 156 456 357 HOH HOH . C 3 HOH A 157 457 358 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . B 2 51.455 -2.187 -1.228 1 27.84 ? C TRS 201 A 1 HETATM 2 C C1 TRS . . . B 2 50.201 -1.488 -1.843 1 27.86 ? C1 TRS 201 A 1 HETATM 3 C C2 TRS . . . B 2 52.21 -1.316 -0.346 1 25.09 ? C2 TRS 201 A 1 HETATM 4 C C3 TRS . . . B 2 51.092 -3.562 -0.572 1 24.81 ? C3 TRS 201 A 1 HETATM 5 N N TRS . . . B 2 52.399 -2.52 -2.185 1 31.68 ? N TRS 201 A 1 HETATM 6 O O1 TRS . . . B 2 50.559 -0.194 -2.414 1 29.39 ? O1 TRS 201 A 1 HETATM 7 O O2 TRS . . . B 2 51.368 -0.863 0.598 1 35.08 ? O2 TRS 201 A 1 HETATM 8 O O3 TRS . . . B 2 52.29 -4.179 -0.051 1 19.06 ? O3 TRS 201 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #