data_4J48 # _model_server_result.job_id '_Iyn3UoZV0uqN-UFpm0GIQ' _model_server_result.datetime_utc '2024-12-26 17:10:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 4J48 # _exptl.entry_id 4J48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J48 _cell.length_a 74.805 _cell.length_b 74.805 _cell.length_c 109.123 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,H,J 1 1 B,E,F,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 50 A CYS 200 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 A SG CYS 53 A CYS 203 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc3 A NE2 HIS 70 A HIS 220 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc4 A SG CYS 77 A CYS 227 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc5 B SG CYS 50 C CYS 200 1_555 E ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc6 B SG CYS 53 C CYS 203 1_555 E ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc7 B NE2 HIS 70 C HIS 220 1_555 E ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc8 B SG CYS 77 C CYS 227 1_555 E ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4J48 _atom_sites.fract_transf_matrix[1][1] 0.013368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN A 1 501 501 ZN ZN . E 3 ZN C 1 301 502 ZN ZN . F 4 GOL C 1 302 1 GOL GOL . G 5 SO4 B 1 101 2 SO4 SO4 . H 6 HOH A 1 601 1 HOH HOH . H 6 HOH A 2 602 2 HOH HOH . H 6 HOH A 3 603 3 HOH HOH . H 6 HOH A 4 604 4 HOH HOH . H 6 HOH A 5 605 5 HOH HOH . H 6 HOH A 6 606 6 HOH HOH . H 6 HOH A 7 607 7 HOH HOH . H 6 HOH A 8 608 8 HOH HOH . H 6 HOH A 9 609 9 HOH HOH . H 6 HOH A 10 610 10 HOH HOH . H 6 HOH A 11 611 11 HOH HOH . H 6 HOH A 12 612 12 HOH HOH . H 6 HOH A 13 613 13 HOH HOH . H 6 HOH A 14 614 14 HOH HOH . H 6 HOH A 15 615 15 HOH HOH . H 6 HOH A 16 616 16 HOH HOH . H 6 HOH A 17 617 17 HOH HOH . H 6 HOH A 18 618 18 HOH HOH . H 6 HOH A 19 619 19 HOH HOH . H 6 HOH A 20 620 20 HOH HOH . H 6 HOH A 21 621 21 HOH HOH . H 6 HOH A 22 622 22 HOH HOH . H 6 HOH A 23 623 23 HOH HOH . H 6 HOH A 24 624 24 HOH HOH . H 6 HOH A 25 625 25 HOH HOH . H 6 HOH A 26 626 26 HOH HOH . H 6 HOH A 27 627 27 HOH HOH . H 6 HOH A 28 628 28 HOH HOH . H 6 HOH A 29 629 29 HOH HOH . H 6 HOH A 30 630 30 HOH HOH . H 6 HOH A 31 631 44 HOH HOH . H 6 HOH A 32 632 46 HOH HOH . H 6 HOH A 33 633 47 HOH HOH . H 6 HOH A 34 634 48 HOH HOH . H 6 HOH A 35 635 49 HOH HOH . H 6 HOH A 36 636 50 HOH HOH . H 6 HOH A 37 637 51 HOH HOH . H 6 HOH A 38 638 53 HOH HOH . H 6 HOH A 39 639 54 HOH HOH . H 6 HOH A 40 640 55 HOH HOH . H 6 HOH A 41 641 56 HOH HOH . H 6 HOH A 42 642 57 HOH HOH . H 6 HOH A 43 643 58 HOH HOH . H 6 HOH A 44 644 65 HOH HOH . I 6 HOH C 1 401 31 HOH HOH . I 6 HOH C 2 402 32 HOH HOH . I 6 HOH C 3 403 33 HOH HOH . I 6 HOH C 4 404 34 HOH HOH . I 6 HOH C 5 405 35 HOH HOH . I 6 HOH C 6 406 36 HOH HOH . I 6 HOH C 7 407 37 HOH HOH . I 6 HOH C 8 408 38 HOH HOH . I 6 HOH C 9 409 39 HOH HOH . I 6 HOH C 10 410 40 HOH HOH . I 6 HOH C 11 411 41 HOH HOH . I 6 HOH C 12 412 42 HOH HOH . I 6 HOH C 13 413 43 HOH HOH . I 6 HOH C 14 414 52 HOH HOH . I 6 HOH C 15 415 59 HOH HOH . I 6 HOH C 16 416 60 HOH HOH . I 6 HOH C 17 417 61 HOH HOH . I 6 HOH C 18 418 62 HOH HOH . I 6 HOH C 19 419 63 HOH HOH . I 6 HOH C 20 420 64 HOH HOH . I 6 HOH C 21 421 66 HOH HOH . J 6 HOH B 1 201 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -21.439 -15.842 -3.805 1 46.81 ? C1 GOL 302 C 1 HETATM 2 O O1 GOL . . . F 4 -21.156 -14.44 -3.656 1 38.12 ? O1 GOL 302 C 1 HETATM 3 C C2 GOL . . . F 4 -20.16 -16.69 -4.05 1 41.79 ? C2 GOL 302 C 1 HETATM 4 O O2 GOL . . . F 4 -20.448 -18.004 -3.601 1 44.17 ? O2 GOL 302 C 1 HETATM 5 C C3 GOL . . . F 4 -18.975 -16.121 -3.27 1 40.34 ? C3 GOL 302 C 1 HETATM 6 O O3 GOL . . . F 4 -17.65 -16.609 -3.569 1 39.77 ? O3 GOL 302 C 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #