data_4J4Q # _model_server_result.job_id zUS54-lPi9doS4kX5bJZ4Q _model_server_result.datetime_utc '2024-11-23 01:45:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j4q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":409}' # _entry.id 4J4Q # _exptl.entry_id 4J4Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4J4Q _cell.length_a 241.265 _cell.length_b 241.265 _cell.length_c 109.561 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J4Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 4 1 2 GLC GLC C1 O1 . O1 HO1 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 401 NAG 3 n C NAG 2 C 2 NAG A 402 NAG 3 n C BMA 3 C 3 BMA A 403 BMA 3 n C MAN 4 C 4 MAN A 404 MAN 4 n D GLC 1 D 1 GLC A 901 TRE 4 n D GLC 2 D 2 GLC A 901 TRE # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? covale ? covale1 A ND2 ASN 15 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale2 A SG CYS 323 A CYS 323 1_555 I C1 PLM . A PLM 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale4 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale6 D C1 GLC . D GLC 1 1_555 D O1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 sing # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 416 n n C1 O2 PLM doub 417 n n C1 C2 PLM sing 418 n n O1 H PLM sing 419 n n C2 C3 PLM sing 420 n n C2 H21 PLM sing 421 n n C2 H22 PLM sing 422 n n C3 C4 PLM sing 423 n n C3 H31 PLM sing 424 n n C3 H32 PLM sing 425 n n C4 C5 PLM sing 426 n n C4 H41 PLM sing 427 n n C4 H42 PLM sing 428 n n C5 C6 PLM sing 429 n n C5 H51 PLM sing 430 n n C5 H52 PLM sing 431 n n C6 C7 PLM sing 432 n n C6 H61 PLM sing 433 n n C6 H62 PLM sing 434 n n C7 C8 PLM sing 435 n n C7 H71 PLM sing 436 n n C7 H72 PLM sing 437 n n C8 C9 PLM sing 438 n n C8 H81 PLM sing 439 n n C8 H82 PLM sing 440 n n C9 CA PLM sing 441 n n C9 H91 PLM sing 442 n n C9 H92 PLM sing 443 n n CA CB PLM sing 444 n n CA HA1 PLM sing 445 n n CA HA2 PLM sing 446 n n CB CC PLM sing 447 n n CB HB1 PLM sing 448 n n CB HB2 PLM sing 449 n n CC CD PLM sing 450 n n CC HC1 PLM sing 451 n n CC HC2 PLM sing 452 n n CD CE PLM sing 453 n n CD HD1 PLM sing 454 n n CD HD2 PLM sing 455 n n CE CF PLM sing 456 n n CE HE1 PLM sing 457 n n CE HE2 PLM sing 458 n n CF CG PLM sing 459 n n CF HF1 PLM sing 460 n n CF HF2 PLM sing 461 n n CG HG1 PLM sing 462 n n CG HG2 PLM sing 463 n n CG HG3 PLM sing 464 n n # _atom_sites.entry_id 4J4Q _atom_sites.fract_transf_matrix[1][1] 0.004145 _atom_sites.fract_transf_matrix[1][2] 0.002393 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 BOG A 1 405 501 BOG BOG . F 5 BOG A 1 406 502 BOG BOG . G 5 BOG A 1 407 503 BOG BOG . H 5 BOG A 1 408 504 BOG BOG . I 6 PLM A 1 409 601 PLM PLM . J 7 SO4 A 1 410 703 SO4 SO4 . K 8 ACT A 1 411 801 ACT ACT . L 7 SO4 B 1 401 702 SO4 SO4 . M 9 HOH A 1 501 1 HOH HOH . M 9 HOH A 2 502 2 HOH HOH . M 9 HOH A 3 503 3 HOH HOH . M 9 HOH A 4 504 4 HOH HOH . M 9 HOH A 5 505 5 HOH HOH . M 9 HOH A 6 506 7 HOH HOH . M 9 HOH A 7 507 8 HOH HOH . M 9 HOH A 8 508 9 HOH HOH . M 9 HOH A 9 509 10 HOH HOH . M 9 HOH A 10 510 11 HOH HOH . M 9 HOH A 11 511 12 HOH HOH . M 9 HOH A 12 512 13 HOH HOH . M 9 HOH A 13 513 14 HOH HOH . M 9 HOH A 14 514 15 HOH HOH . M 9 HOH A 15 515 16 HOH HOH . M 9 HOH A 16 516 17 HOH HOH . M 9 HOH A 17 517 18 HOH HOH . M 9 HOH A 18 518 19 HOH HOH . M 9 HOH A 19 519 20 HOH HOH . M 9 HOH A 20 520 21 HOH HOH . M 9 HOH A 21 521 22 HOH HOH . M 9 HOH A 22 522 24 HOH HOH . M 9 HOH A 23 523 25 HOH HOH . M 9 HOH A 24 524 26 HOH HOH . M 9 HOH A 25 525 27 HOH HOH . M 9 HOH A 26 526 28 HOH HOH . M 9 HOH A 27 527 29 HOH HOH . M 9 HOH A 28 528 30 HOH HOH . M 9 HOH A 29 529 31 HOH HOH . M 9 HOH A 30 530 32 HOH HOH . N 9 HOH B 1 501 6 HOH HOH . N 9 HOH B 2 502 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . I 6 25.217 14.596 55.708 1 75.92 ? C1 PLM 409 A 1 HETATM 2 O O2 PLM . . . I 6 24.317 14.074 56.363 1 74.7 ? O2 PLM 409 A 1 HETATM 3 C C2 PLM . . . I 6 25.653 16.006 56.064 1 69.6 ? C2 PLM 409 A 1 HETATM 4 C C3 PLM . . . I 6 24.427 16.803 56.519 1 69.26 ? C3 PLM 409 A 1 HETATM 5 C C4 PLM . . . I 6 24.684 17.61 57.785 1 65.67 ? C4 PLM 409 A 1 HETATM 6 C C5 PLM . . . I 6 24.602 19.105 57.516 1 68.61 ? C5 PLM 409 A 1 HETATM 7 C C6 PLM . . . I 6 23.811 19.819 58.61 1 71.95 ? C6 PLM 409 A 1 HETATM 8 C C7 PLM . . . I 6 24.527 21.083 59.077 1 65.85 ? C7 PLM 409 A 1 HETATM 9 C C8 PLM . . . I 6 23.525 22.219 59.219 1 69.19 ? C8 PLM 409 A 1 HETATM 10 C C9 PLM . . . I 6 23.988 23.522 58.564 1 66.02 ? C9 PLM 409 A 1 HETATM 11 C CA PLM . . . I 6 22.818 24.5 58.516 1 67.43 ? CA PLM 409 A 1 HETATM 12 C CB PLM . . . I 6 23.123 25.761 57.713 1 68.18 ? CB PLM 409 A 1 HETATM 13 C CC PLM . . . I 6 23.947 26.747 58.531 1 67.59 ? CC PLM 409 A 1 HETATM 14 C CD PLM . . . I 6 24.446 27.887 57.657 1 62 ? CD PLM 409 A 1 HETATM 15 C CE PLM . . . I 6 24.225 29.224 58.351 1 54.23 ? CE PLM 409 A 1 HETATM 16 C CF PLM . . . I 6 25.318 30.208 57.955 1 57.74 ? CF PLM 409 A 1 HETATM 17 C CG PLM . . . I 6 24.771 31.592 57.71 1 52.32 ? CG PLM 409 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #