data_4J4Z # _model_server_result.job_id FqYevYMuVMWWyim_OJQgMQ _model_server_result.datetime_utc '2024-11-12 21:28:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j4z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 4J4Z # _exptl.entry_id 4J4Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.06 _cell.angle_gamma 90 _cell.entry_id 4J4Z _cell.length_a 69.906 _cell.length_b 66.771 _cell.length_c 38.102 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J4Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_657 -x+1,y,-z+2 -1 0 0 0 1 0 0 0 -1 56.594733 0 75.032392 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 128 A VAL 128 1_555 A N MSE 129 A MSE 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MSE 129 A MSE 129 1_555 A N PHE 130 A PHE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 4J4Z _atom_sites.fract_transf_matrix[1][1] 0.014305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002538 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 2 SO4 A 1 202 3 SO4 SO4 . D 3 PEG A 1 203 1 PEG PEG . E 3 PEG A 1 204 2 PEG PEG . F 3 PEG A 1 205 3 PEG PEG . G 4 EPE A 1 206 1 EPE EPE . H 5 HOH A 1 301 1 HOH HOH . H 5 HOH A 2 302 2 HOH HOH . H 5 HOH A 3 303 3 HOH HOH . H 5 HOH A 4 304 4 HOH HOH . H 5 HOH A 5 305 5 HOH HOH . H 5 HOH A 6 306 6 HOH HOH . H 5 HOH A 7 307 7 HOH HOH . H 5 HOH A 8 308 8 HOH HOH . H 5 HOH A 9 309 9 HOH HOH . H 5 HOH A 10 310 10 HOH HOH . H 5 HOH A 11 311 11 HOH HOH . H 5 HOH A 12 312 12 HOH HOH . H 5 HOH A 13 313 13 HOH HOH . H 5 HOH A 14 314 14 HOH HOH . H 5 HOH A 15 315 15 HOH HOH . H 5 HOH A 16 316 16 HOH HOH . H 5 HOH A 17 317 17 HOH HOH . H 5 HOH A 18 318 18 HOH HOH . H 5 HOH A 19 319 19 HOH HOH . H 5 HOH A 20 320 20 HOH HOH . H 5 HOH A 21 321 21 HOH HOH . H 5 HOH A 22 322 22 HOH HOH . H 5 HOH A 23 323 23 HOH HOH . H 5 HOH A 24 324 24 HOH HOH . H 5 HOH A 25 325 25 HOH HOH . H 5 HOH A 26 326 27 HOH HOH . H 5 HOH A 27 327 28 HOH HOH . H 5 HOH A 28 328 29 HOH HOH . H 5 HOH A 29 329 30 HOH HOH . H 5 HOH A 30 330 31 HOH HOH . H 5 HOH A 31 331 32 HOH HOH . H 5 HOH A 32 332 33 HOH HOH . H 5 HOH A 33 333 34 HOH HOH . H 5 HOH A 34 334 35 HOH HOH . H 5 HOH A 35 335 36 HOH HOH . H 5 HOH A 36 336 37 HOH HOH . H 5 HOH A 37 337 38 HOH HOH . H 5 HOH A 38 338 39 HOH HOH . H 5 HOH A 39 339 40 HOH HOH . H 5 HOH A 40 340 41 HOH HOH . H 5 HOH A 41 341 42 HOH HOH . H 5 HOH A 42 342 43 HOH HOH . H 5 HOH A 43 343 44 HOH HOH . H 5 HOH A 44 344 45 HOH HOH . H 5 HOH A 45 345 46 HOH HOH . H 5 HOH A 46 346 47 HOH HOH . H 5 HOH A 47 347 48 HOH HOH . H 5 HOH A 48 348 49 HOH HOH . H 5 HOH A 49 349 50 HOH HOH . H 5 HOH A 50 350 51 HOH HOH . H 5 HOH A 51 351 52 HOH HOH . H 5 HOH A 52 352 53 HOH HOH . H 5 HOH A 53 353 54 HOH HOH . H 5 HOH A 54 354 55 HOH HOH . H 5 HOH A 55 355 56 HOH HOH . H 5 HOH A 56 356 57 HOH HOH . H 5 HOH A 57 357 58 HOH HOH . H 5 HOH A 58 358 59 HOH HOH . H 5 HOH A 59 359 60 HOH HOH . H 5 HOH A 60 360 61 HOH HOH . H 5 HOH A 61 361 62 HOH HOH . H 5 HOH A 62 362 63 HOH HOH . H 5 HOH A 63 363 64 HOH HOH . H 5 HOH A 64 364 65 HOH HOH . H 5 HOH A 65 365 66 HOH HOH . H 5 HOH A 66 366 67 HOH HOH . H 5 HOH A 67 367 68 HOH HOH . H 5 HOH A 68 368 69 HOH HOH . H 5 HOH A 69 369 70 HOH HOH . H 5 HOH A 70 370 71 HOH HOH . H 5 HOH A 71 371 72 HOH HOH . H 5 HOH A 72 372 73 HOH HOH . H 5 HOH A 73 373 74 HOH HOH . H 5 HOH A 74 374 75 HOH HOH . H 5 HOH A 75 375 76 HOH HOH . H 5 HOH A 76 376 77 HOH HOH . H 5 HOH A 77 377 78 HOH HOH . H 5 HOH A 78 378 79 HOH HOH . H 5 HOH A 79 379 80 HOH HOH . H 5 HOH A 80 380 81 HOH HOH . H 5 HOH A 81 381 82 HOH HOH . H 5 HOH A 82 382 83 HOH HOH . H 5 HOH A 83 383 84 HOH HOH . H 5 HOH A 84 384 85 HOH HOH . H 5 HOH A 85 385 86 HOH HOH . H 5 HOH A 86 386 87 HOH HOH . H 5 HOH A 87 387 88 HOH HOH . H 5 HOH A 88 388 89 HOH HOH . H 5 HOH A 89 389 90 HOH HOH . H 5 HOH A 90 390 91 HOH HOH . H 5 HOH A 91 391 92 HOH HOH . H 5 HOH A 92 392 93 HOH HOH . H 5 HOH A 93 393 94 HOH HOH . H 5 HOH A 94 394 95 HOH HOH . H 5 HOH A 95 395 96 HOH HOH . H 5 HOH A 96 396 97 HOH HOH . H 5 HOH A 97 397 98 HOH HOH . H 5 HOH A 98 398 99 HOH HOH . H 5 HOH A 99 399 100 HOH HOH . H 5 HOH A 100 400 101 HOH HOH . H 5 HOH A 101 401 102 HOH HOH . H 5 HOH A 102 402 103 HOH HOH . H 5 HOH A 103 403 104 HOH HOH . H 5 HOH A 104 404 105 HOH HOH . H 5 HOH A 105 405 106 HOH HOH . H 5 HOH A 106 406 107 HOH HOH . H 5 HOH A 107 407 108 HOH HOH . H 5 HOH A 108 408 109 HOH HOH . H 5 HOH A 109 409 110 HOH HOH . H 5 HOH A 110 410 111 HOH HOH . H 5 HOH A 111 411 112 HOH HOH . H 5 HOH A 112 412 113 HOH HOH . H 5 HOH A 113 413 114 HOH HOH . H 5 HOH A 114 414 115 HOH HOH . H 5 HOH A 115 415 116 HOH HOH . H 5 HOH A 116 416 117 HOH HOH . H 5 HOH A 117 417 118 HOH HOH . H 5 HOH A 118 418 119 HOH HOH . H 5 HOH A 119 419 120 HOH HOH . H 5 HOH A 120 420 121 HOH HOH . H 5 HOH A 121 421 122 HOH HOH . H 5 HOH A 122 422 123 HOH HOH . H 5 HOH A 123 423 124 HOH HOH . H 5 HOH A 124 424 125 HOH HOH . H 5 HOH A 125 425 126 HOH HOH . H 5 HOH A 126 426 127 HOH HOH . H 5 HOH A 127 427 128 HOH HOH . H 5 HOH A 128 428 129 HOH HOH . H 5 HOH A 129 429 130 HOH HOH . H 5 HOH A 130 430 131 HOH HOH . H 5 HOH A 131 431 132 HOH HOH . H 5 HOH A 132 432 133 HOH HOH . H 5 HOH A 133 433 134 HOH HOH . H 5 HOH A 134 434 135 HOH HOH . H 5 HOH A 135 435 136 HOH HOH . H 5 HOH A 136 436 137 HOH HOH . H 5 HOH A 137 437 138 HOH HOH . H 5 HOH A 138 438 139 HOH HOH . H 5 HOH A 139 439 140 HOH HOH . H 5 HOH A 140 440 141 HOH HOH . H 5 HOH A 141 441 142 HOH HOH . H 5 HOH A 142 442 143 HOH HOH . H 5 HOH A 143 443 144 HOH HOH . H 5 HOH A 144 444 145 HOH HOH . H 5 HOH A 145 445 146 HOH HOH . H 5 HOH A 146 446 147 HOH HOH . H 5 HOH A 147 447 148 HOH HOH . H 5 HOH A 148 448 149 HOH HOH . H 5 HOH A 149 449 150 HOH HOH . H 5 HOH A 150 450 151 HOH HOH . H 5 HOH A 151 451 152 HOH HOH . H 5 HOH A 152 452 153 HOH HOH . H 5 HOH A 153 453 154 HOH HOH . H 5 HOH A 154 454 155 HOH HOH . H 5 HOH A 155 455 156 HOH HOH . H 5 HOH A 156 456 157 HOH HOH . H 5 HOH A 157 457 158 HOH HOH . H 5 HOH A 158 458 159 HOH HOH . H 5 HOH A 159 459 160 HOH HOH . H 5 HOH A 160 460 161 HOH HOH . H 5 HOH A 161 461 162 HOH HOH . H 5 HOH A 162 462 163 HOH HOH . H 5 HOH A 163 463 164 HOH HOH . H 5 HOH A 164 464 165 HOH HOH . H 5 HOH A 165 465 166 HOH HOH . H 5 HOH A 166 466 167 HOH HOH . H 5 HOH A 167 467 168 HOH HOH . H 5 HOH A 168 468 169 HOH HOH . H 5 HOH A 169 469 170 HOH HOH . H 5 HOH A 170 470 171 HOH HOH . H 5 HOH A 171 471 172 HOH HOH . H 5 HOH A 172 472 173 HOH HOH . H 5 HOH A 173 473 174 HOH HOH . H 5 HOH A 174 474 175 HOH HOH . H 5 HOH A 175 475 176 HOH HOH . H 5 HOH A 176 476 177 HOH HOH . H 5 HOH A 177 477 178 HOH HOH . H 5 HOH A 178 478 179 HOH HOH . H 5 HOH A 179 479 180 HOH HOH . H 5 HOH A 180 480 181 HOH HOH . H 5 HOH A 181 481 182 HOH HOH . H 5 HOH A 182 482 183 HOH HOH . H 5 HOH A 183 483 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . G 4 22.658 52.659 34.474 1 17.99 ? N1 EPE 206 A 1 HETATM 2 C C2 EPE . . . G 4 21.77 53.761 34.04 1 19.53 ? C2 EPE 206 A 1 HETATM 3 C C3 EPE . . . G 4 22.214 55.149 34.515 1 28.57 ? C3 EPE 206 A 1 HETATM 4 N N4 EPE . . . G 4 23.623 55.262 34.844 1 30.54 ? N4 EPE 206 A 1 HETATM 5 C C5 EPE . . . G 4 24.241 54.139 35.532 1 24.41 ? C5 EPE 206 A 1 HETATM 6 C C6 EPE . . . G 4 23.261 52.993 35.774 1 20.01 ? C6 EPE 206 A 1 HETATM 7 C C7 EPE . . . G 4 24.303 56.554 34.967 1 21.83 ? C7 EPE 206 A 1 HETATM 8 C C8 EPE . . . G 4 23.65 57.754 34.291 1 25.85 ? C8 EPE 206 A 1 HETATM 9 O O8 EPE . . . G 4 22.581 58.196 35.086 1 23.61 ? O8 EPE 206 A 1 HETATM 10 C C9 EPE . . . G 4 21.852 51.421 34.487 1 15.92 ? C9 EPE 206 A 1 HETATM 11 C C10 EPE . . . G 4 22.713 50.21 34.818 1 13.22 ? C10 EPE 206 A 1 HETATM 12 S S EPE . . . G 4 22.013 48.682 34.212 1 9.51 ? S EPE 206 A 1 HETATM 13 O O1S EPE . . . G 4 20.698 48.551 34.808 1 13.56 ? O1S EPE 206 A 1 HETATM 14 O O2S EPE . . . G 4 22.077 48.791 32.767 1 11.46 ? O2S EPE 206 A 1 HETATM 15 O O3S EPE . . . G 4 22.895 47.645 34.763 1 11 ? O3S EPE 206 A 1 HETATM 16 H H21 EPE . . . G 4 20.763 53.568 34.412 1 23.43 ? H21 EPE 206 A 1 HETATM 17 H H22 EPE . . . G 4 21.717 53.762 32.952 1 23.43 ? H22 EPE 206 A 1 HETATM 18 H H31 EPE . . . G 4 21.629 55.42 35.394 1 34.28 ? H31 EPE 206 A 1 HETATM 19 H H32 EPE . . . G 4 21.978 55.875 33.737 1 34.28 ? H32 EPE 206 A 1 HETATM 20 H H51 EPE . . . G 4 24.637 54.479 36.489 1 29.29 ? H51 EPE 206 A 1 HETATM 21 H H52 EPE . . . G 4 25.08 53.773 34.939 1 29.29 ? H52 EPE 206 A 1 HETATM 22 H H61 EPE . . . G 4 23.785 52.128 36.18 1 24.02 ? H61 EPE 206 A 1 HETATM 23 H H62 EPE . . . G 4 22.49 53.299 36.481 1 24.02 ? H62 EPE 206 A 1 HETATM 24 H H71 EPE . . . G 4 25.311 56.446 34.565 1 26.19 ? H71 EPE 206 A 1 HETATM 25 H H72 EPE . . . G 4 24.412 56.78 36.027 1 26.19 ? H72 EPE 206 A 1 HETATM 26 H H81 EPE . . . G 4 23.285 57.471 33.303 1 31.02 ? H81 EPE 206 A 1 HETATM 27 H H82 EPE . . . G 4 24.379 58.555 34.17 1 31.02 ? H82 EPE 206 A 1 HETATM 28 H HO8 EPE . . . G 4 22.511 57.63 35.883 1 28.33 ? HO8 EPE 206 A 1 HETATM 29 H H91 EPE . . . G 4 21.388 51.28 33.511 1 19.1 ? H91 EPE 206 A 1 HETATM 30 H H92 EPE . . . G 4 21.056 51.514 35.225 1 19.1 ? H92 EPE 206 A 1 HETATM 31 H H101 EPE . . . G 4 23.704 50.347 34.384 1 15.86 ? H101 EPE 206 A 1 HETATM 32 H H102 EPE . . . G 4 22.834 50.144 35.9 1 15.86 ? H102 EPE 206 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #