data_4J54
#
_model_server_result.job_id            NJs_-dbagUsRa9-MrOAFlQ 
_model_server_result.datetime_utc      '2024-11-28 01:18:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j54 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    4J54 
#
_exptl.entry_id    4J54 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              604.712 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(3R,3aS,3bR,6aS,7aS)-octahydrodifuro[2,3-b:3',2'-d]furan-3-yl [(1S,2R)-1-benzyl-2-hydroxy-3-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}propyl]carbamate" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4J54 
_cell.length_a            28.572 
_cell.length_b            65.788 
_cell.length_c            92.821 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J54 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 S N N 
#
_chem_comp.formula           'C30 H40 N2 O9 S' 
_chem_comp.formula_weight    604.712 
_chem_comp.id                G52 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(3R,3aS,3bR,6aS,7aS)-octahydrodifuro[2,3-b:3',2'-d]furan-3-yl [(1S,2R)-1-benzyl-2-hydroxy-3-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}propyl]carbamate" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3 C2 G52 doub 89 n y 
O39 C2 G52 sing 90 n n 
C2 C7 G52 sing 91 n y 
C3 C4 G52 sing 92 n y 
C3 H3 G52 sing 93 n n 
C4 C5 G52 doub 94 n y 
C4 H4 G52 sing 95 n n 
C5 C6 G52 sing 96 n y 
C5 S8 G52 sing 97 n n 
C7 C6 G52 doub 98 n y 
C6 H6 G52 sing 99 n n 
C7 H7 G52 sing 100 n n 
O9 S8 G52 doub 101 n n 
S8 O10 G52 doub 102 n n 
S8 N11 G52 sing 103 n n 
N11 C16 G52 sing 104 n n 
N11 C12 G52 sing 105 n n 
C12 C13 G52 sing 106 n n 
C12 H12 G52 sing 107 n n 
C12 H12A G52 sing 108 n n 
C14 C13 G52 sing 109 n n 
C13 C15 G52 sing 110 n n 
C13 H13 G52 sing 111 n n 
C14 H14 G52 sing 112 n n 
C14 H14A G52 sing 113 n n 
C14 H14B G52 sing 114 n n 
C15 H15 G52 sing 115 n n 
C15 H15A G52 sing 116 n n 
C15 H15B G52 sing 117 n n 
C16 C17 G52 sing 118 n n 
C16 H16 G52 sing 119 n n 
C16 H16A G52 sing 120 n n 
C19 C17 G52 sing 121 n n 
C17 O18 G52 sing 122 n n 
C17 H17 G52 sing 123 n n 
O18 HO18 G52 sing 124 n n 
C32 C19 G52 sing 125 n n 
C19 N20 G52 sing 126 n n 
C19 H19 G52 sing 127 n n 
N20 C21 G52 sing 128 n n 
N20 HN20 G52 sing 129 n n 
O22 C21 G52 doub 130 n n 
C21 O23 G52 sing 131 n n 
O23 C24 G52 sing 132 n n 
C31 C24 G52 sing 133 n n 
C24 C25 G52 sing 134 n n 
C24 H24 G52 sing 135 n n 
O26 C25 G52 sing 136 n n 
C25 H25 G52 sing 137 n n 
C25 H25A G52 sing 138 n n 
C27 O26 G52 sing 139 n n 
C31 C27 G52 sing 140 n n 
O28 C27 G52 sing 141 n n 
C27 H27 G52 sing 142 n n 
C29 O28 G52 sing 143 n n 
O41 C29 G52 sing 144 n n 
C30 C29 G52 sing 145 n n 
C29 H29 G52 sing 146 n n 
C43 C30 G52 sing 147 n n 
C30 C31 G52 sing 148 n n 
C30 H30 G52 sing 149 n n 
C31 H31 G52 sing 150 n n 
C38 C32 G52 sing 151 n n 
C32 H32 G52 sing 152 n n 
C32 H32A G52 sing 153 n n 
C34 C33 G52 doub 154 n y 
C33 C38 G52 sing 155 n y 
C33 H33 G52 sing 156 n n 
C35 C34 G52 sing 157 n y 
C34 H34 G52 sing 158 n n 
C35 C36 G52 doub 159 n y 
C35 H35 G52 sing 160 n n 
C36 C37 G52 sing 161 n y 
C36 H36 G52 sing 162 n n 
C37 C38 G52 doub 163 n y 
C37 H37 G52 sing 164 n n 
O39 C40 G52 sing 165 n n 
C40 H40 G52 sing 166 n n 
C40 H40A G52 sing 167 n n 
C40 H40B G52 sing 168 n n 
C42 O41 G52 sing 169 n n 
C43 C42 G52 sing 170 n n 
C42 H42 G52 sing 171 n n 
C42 H42A G52 sing 172 n n 
C43 H43 G52 sing 173 n n 
C43 H43A G52 sing 174 n n 
#
_atom_sites.entry_id                     4J54 
_atom_sites.fract_transf_matrix[1][1]    0.034999 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0152 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010773 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 G52 A 1 201 201 G52 G52 . 
D 3 IOD A 1 202 511 IOD IOD . 
E 3 IOD A 1 203 515 IOD IOD . 
F 3 IOD A 1 204 516 IOD IOD . 
G 3 IOD A 1 205 517 IOD IOD . 
H 3 IOD A 1 206 518 IOD IOD . 
I 3 IOD A 1 207 519 IOD IOD . 
J 3 IOD A 1 208 522 IOD IOD . 
K 3 IOD A 1 209 523 IOD IOD . 
L 3 IOD A 1 210 524 IOD IOD . 
M 3 IOD A 1 211 525 IOD IOD . 
N 3 IOD A 1 212 526 IOD IOD . 
O 3 IOD A 1 213 527 IOD IOD . 
P 3 IOD A 1 214 531 IOD IOD . 
Q 3 IOD A 1 215 532 IOD IOD . 
R 4 ACT A 1 216 551 ACT ACT . 
S 2 G52 B 1 101 203 G52 G52 . 
T 3 IOD B 1 102 512 IOD IOD . 
U 3 IOD B 1 103 513 IOD IOD . 
V 3 IOD B 1 104 514 IOD IOD . 
W 3 IOD B 1 105 520 IOD IOD . 
X 3 IOD B 1 106 521 IOD IOD . 
Y 3 IOD B 1 107 528 IOD IOD . 
Z 3 IOD B 1 108 529 IOD IOD . 
AA 3 IOD B 1 109 530 IOD IOD . 
BA 5 HOH A 1 301 1002 HOH HOH . 
BA 5 HOH A 2 302 1003 HOH HOH . 
BA 5 HOH A 3 303 1004 HOH HOH . 
BA 5 HOH A 4 304 1009 HOH HOH . 
BA 5 HOH A 5 305 1010 HOH HOH . 
BA 5 HOH A 6 306 1011 HOH HOH . 
BA 5 HOH A 7 307 1013 HOH HOH . 
BA 5 HOH A 8 308 1016 HOH HOH . 
BA 5 HOH A 9 309 1017 HOH HOH . 
BA 5 HOH A 10 310 1020 HOH HOH . 
BA 5 HOH A 11 311 1022 HOH HOH . 
BA 5 HOH A 12 312 1024 HOH HOH . 
BA 5 HOH A 13 313 1027 HOH HOH . 
BA 5 HOH A 14 314 1028 HOH HOH . 
BA 5 HOH A 15 315 1029 HOH HOH . 
BA 5 HOH A 16 316 1030 HOH HOH . 
BA 5 HOH A 17 317 1031 HOH HOH . 
BA 5 HOH A 18 318 1032 HOH HOH . 
BA 5 HOH A 19 319 1033 HOH HOH . 
BA 5 HOH A 20 320 1035 HOH HOH . 
BA 5 HOH A 21 321 1036 HOH HOH . 
BA 5 HOH A 22 322 1039 HOH HOH . 
BA 5 HOH A 23 323 1041 HOH HOH . 
BA 5 HOH A 24 324 1042 HOH HOH . 
BA 5 HOH A 25 325 1043 HOH HOH . 
BA 5 HOH A 26 326 1045 HOH HOH . 
BA 5 HOH A 27 327 1046 HOH HOH . 
BA 5 HOH A 28 328 1049 HOH HOH . 
BA 5 HOH A 29 329 1051 HOH HOH . 
BA 5 HOH A 30 330 1052 HOH HOH . 
BA 5 HOH A 31 331 1053 HOH HOH . 
BA 5 HOH A 32 332 1057 HOH HOH . 
BA 5 HOH A 33 333 1058 HOH HOH . 
BA 5 HOH A 34 334 1060 HOH HOH . 
BA 5 HOH A 35 335 1062 HOH HOH . 
BA 5 HOH A 36 336 1065 HOH HOH . 
BA 5 HOH A 37 337 1069 HOH HOH . 
BA 5 HOH A 38 338 1075 HOH HOH . 
BA 5 HOH A 39 339 1076 HOH HOH . 
BA 5 HOH A 40 340 1078 HOH HOH . 
BA 5 HOH A 41 341 1079 HOH HOH . 
BA 5 HOH A 42 342 1081 HOH HOH . 
BA 5 HOH A 43 343 1083 HOH HOH . 
BA 5 HOH A 44 344 1087 HOH HOH . 
BA 5 HOH A 45 345 1088 HOH HOH . 
BA 5 HOH A 46 346 1086 HOH HOH . 
CA 5 HOH B 1 1001 1001 HOH HOH . 
CA 5 HOH B 2 1002 1005 HOH HOH . 
CA 5 HOH B 3 1003 1006 HOH HOH . 
CA 5 HOH B 4 1004 1007 HOH HOH . 
CA 5 HOH B 5 1005 1008 HOH HOH . 
CA 5 HOH B 6 1006 1012 HOH HOH . 
CA 5 HOH B 7 1007 1014 HOH HOH . 
CA 5 HOH B 8 1008 1015 HOH HOH . 
CA 5 HOH B 9 1009 1018 HOH HOH . 
CA 5 HOH B 10 1010 1019 HOH HOH . 
CA 5 HOH B 11 1011 1021 HOH HOH . 
CA 5 HOH B 12 1012 1023 HOH HOH . 
CA 5 HOH B 13 1013 1025 HOH HOH . 
CA 5 HOH B 14 1014 1026 HOH HOH . 
CA 5 HOH B 15 1015 1034 HOH HOH . 
CA 5 HOH B 16 1016 1037 HOH HOH . 
CA 5 HOH B 17 1017 1038 HOH HOH . 
CA 5 HOH B 18 1018 1040 HOH HOH . 
CA 5 HOH B 19 1019 1044 HOH HOH . 
CA 5 HOH B 20 1020 1047 HOH HOH . 
CA 5 HOH B 21 1021 1048 HOH HOH . 
CA 5 HOH B 22 1022 1050 HOH HOH . 
CA 5 HOH B 23 1023 1054 HOH HOH . 
CA 5 HOH B 24 1024 1055 HOH HOH . 
CA 5 HOH B 25 1025 1056 HOH HOH . 
CA 5 HOH B 26 1026 1059 HOH HOH . 
CA 5 HOH B 27 1027 1061 HOH HOH . 
CA 5 HOH B 28 1028 1063 HOH HOH . 
CA 5 HOH B 29 1029 1064 HOH HOH . 
CA 5 HOH B 30 1030 1066 HOH HOH . 
CA 5 HOH B 31 1031 1067 HOH HOH . 
CA 5 HOH B 32 1032 1068 HOH HOH . 
CA 5 HOH B 33 1033 1070 HOH HOH . 
CA 5 HOH B 34 1034 1071 HOH HOH . 
CA 5 HOH B 35 1035 1072 HOH HOH . 
CA 5 HOH B 36 1036 1073 HOH HOH . 
CA 5 HOH B 37 1037 1074 HOH HOH . 
CA 5 HOH B 38 1038 1077 HOH HOH . 
CA 5 HOH B 39 1039 1080 HOH HOH . 
CA 5 HOH B 40 1040 1082 HOH HOH . 
CA 5 HOH B 41 1041 1084 HOH HOH . 
CA 5 HOH B 42 1042 1085 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 G52 . . . C 2 -1.13 8.41 30.88 1 12.22 ? C2 G52 201 A 1 
HETATM 2 C C3 G52 . . . C 2 0.023 7.725 31.244 1 11.02 ? C3 G52 201 A 1 
HETATM 3 C C4 G52 . . . C 2 0.616 7.948 32.483 1 13.36 ? C4 G52 201 A 1 
HETATM 4 C C5 G52 . . . C 2 0.011 8.805 33.385 1 9.24 ? C5 G52 201 A 1 
HETATM 5 C C6 G52 . . . C 2 -1.136 9.49 33.047 1 11.79 ? C6 G52 201 A 1 
HETATM 6 C C7 G52 . . . C 2 -1.722 9.295 31.782 1 13.7 ? C7 G52 201 A 1 
HETATM 7 S S8 G52 . . . C 2 0.772 9.006 34.966 1 12.98 ? S8 G52 201 A 1 
HETATM 8 O O9 G52 . . . C 2 2.225 8.858 34.824 1 11.41 ? O9 G52 201 A 1 
HETATM 9 O O10 G52 . . . C 2 0.353 10.311 35.556 1 13.91 ? O10 G52 201 A 1 
HETATM 10 N N11 G52 . . . C 2 0.177 7.882 35.996 1 11.61 ? N11 G52 201 A 1 
HETATM 11 C C12 G52 . . . C 2 -1.251 7.831 36.149 1 12.77 ? C12 G52 201 A 1 
HETATM 12 C C13 G52 . . . C 2 -1.668 7.385 37.555 1 11.88 ? C13 G52 201 A 1 
HETATM 13 C C14 G52 . . . C 2 -1.156 8.369 38.624 1 11.51 ? C14 G52 201 A 1 
HETATM 14 C C15 G52 . . . C 2 -3.2 7.324 37.639 1 12.12 ? C15 G52 201 A 1 
HETATM 15 C C16 G52 . . . C 2 0.859 6.597 36.008 1 12.09 ? C16 G52 201 A 1 
HETATM 16 C C17 G52 . . . C 2 1.529 6.283 37.35 1 8.12 ? C17 G52 201 A 1 
HETATM 17 O O18 G52 . . . C 2 1.968 4.931 37.375 1 11.34 ? O18 G52 201 A 1 
HETATM 18 C C19 G52 . . . C 2 2.695 7.216 37.637 1 7.77 ? C19 G52 201 A 1 
HETATM 19 N N20 G52 . . . C 2 3.163 7.011 39.017 1 8.32 ? N20 G52 201 A 1 
HETATM 20 C C21 G52 . . . C 2 2.924 7.893 39.995 1 11.37 ? C21 G52 201 A 1 
HETATM 21 O O22 G52 . . . C 2 2.359 8.978 39.804 1 9.62 ? O22 G52 201 A 1 
HETATM 22 O O23 G52 . . . C 2 3.331 7.446 41.214 1 11.08 ? O23 G52 201 A 1 
HETATM 23 C C24 G52 . . . C 2 3.205 8.424 42.257 1 12.43 ? C24 G52 201 A 1 
HETATM 24 C C25 G52 . . . C 2 2.588 7.744 43.481 1 9.27 ? C25 G52 201 A 1 
HETATM 25 O O26 G52 . . . C 2 3.643 6.946 43.998 1 10.03 ? O26 G52 201 A 1 
HETATM 26 C C27 G52 . . . C 2 4.904 7.483 43.633 1 12.55 ? C27 G52 201 A 1 
HETATM 27 O O28 G52 . . . C 2 5.646 6.575 42.833 1 11.24 ? O28 G52 201 A 1 
HETATM 28 C C29 G52 . . . C 2 6.122 7.201 41.642 1 11.61 ? C29 G52 201 A 1 
HETATM 29 C C30 G52 . . . C 2 5.708 8.668 41.717 1 11.89 ? C30 G52 201 A 1 
HETATM 30 C C31 G52 . . . C 2 4.621 8.718 42.787 1 12.55 ? C31 G52 201 A 1 
HETATM 31 C C32 G52 . . . C 2 3.943 6.919 36.78 1 6.74 ? C32 G52 201 A 1 
HETATM 32 C C33 G52 . . . C 2 6.107 7.489 37.955 1 8.67 ? C33 G52 201 A 1 
HETATM 33 C C34 G52 . . . C 2 7.074 8.408 38.36 1 14.29 ? C34 G52 201 A 1 
HETATM 34 C C35 G52 . . . C 2 6.914 9.754 38.015 1 13.91 ? C35 G52 201 A 1 
HETATM 35 C C36 G52 . . . C 2 5.864 10.203 37.226 1 12.27 ? C36 G52 201 A 1 
HETATM 36 C C37 G52 . . . C 2 4.905 9.25 36.83 1 9.17 ? C37 G52 201 A 1 
HETATM 37 C C38 G52 . . . C 2 5.036 7.918 37.196 1 9.2 ? C38 G52 201 A 1 
HETATM 38 O O39 G52 . . . C 2 -1.682 8.072 29.687 1 11.79 ? O39 G52 201 A 1 
HETATM 39 C C40 G52 . . . C 2 -2.987 8.595 29.454 1 10.05 ? C40 G52 201 A 1 
HETATM 40 O O41 G52 . . . C 2 7.555 7.161 41.665 1 12.7 ? O41 G52 201 A 1 
HETATM 41 C C42 G52 . . . C 2 7.99 8.273 42.461 1 12.74 ? C42 G52 201 A 1 
HETATM 42 C C43 G52 . . . C 2 6.982 9.392 42.188 1 17.72 ? C43 G52 201 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           42 
#