data_4J55 # _model_server_result.job_id dWVPIEKUjnN-a6NDbaM3dg _model_server_result.datetime_utc '2024-11-14 23:43:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4J55 # _exptl.entry_id 4J55 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 601.711 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3aS,5R,6aR)-hexahydro-2H-cyclopenta[b]furan-5-yl [(1S,2R)-1-benzyl-2-hydroxy-3-([(4-methoxyphenyl)sulfonyl]{[(2R)-5-oxopyrrolidin-2-yl]methyl}amino)propyl]carbamate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J55 _cell.length_a 28.642 _cell.length_b 65.967 _cell.length_c 93.713 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C30 H39 N3 O8 S' _chem_comp.formula_weight 601.711 _chem_comp.id 031 _chem_comp.mon_nstd_flag . _chem_comp.name '(3aS,5R,6aR)-hexahydro-2H-cyclopenta[b]furan-5-yl [(1S,2R)-1-benzyl-2-hydroxy-3-([(4-methoxyphenyl)sulfonyl]{[(2R)-5-oxopyrrolidin-2-yl]methyl}amino)propyl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C40 O39 031 sing 1 n n C2 O39 031 sing 2 n n C40 H40 031 sing 3 n n C40 H40A 031 sing 4 n n C40 H40B 031 sing 5 n n C3 C2 031 doub 6 n y C2 C7 031 sing 7 n y C4 C3 031 sing 8 n y C3 H3 031 sing 9 n n C4 C5 031 doub 10 n y C4 H4 031 sing 11 n n S8 C5 031 sing 12 n n C5 C6 031 sing 13 n y C6 C7 031 doub 14 n y C6 H6 031 sing 15 n n C7 H7 031 sing 16 n n O10 S8 031 doub 17 n n N11 S8 031 sing 18 n n S8 O9 031 doub 19 n n C12 N11 031 sing 20 n n N11 C16 031 sing 21 n n C13 C12 031 sing 22 n n C12 H12 031 sing 23 n n C12 H12A 031 sing 24 n n N15 C13 031 sing 25 n n C14 C13 031 sing 26 n n C13 H13 031 sing 27 n n C47 C14 031 sing 28 n n C14 H14 031 sing 29 n n C14 H14A 031 sing 30 n n C45 N15 031 sing 31 n n N15 HN15 031 sing 32 n n O46 C45 031 doub 33 n n C45 C47 031 sing 34 n n C47 H47 031 sing 35 n n C47 H47A 031 sing 36 n n C17 C16 031 sing 37 n n C16 H16 031 sing 38 n n C16 H16A 031 sing 39 n n C17 C19 031 sing 40 n n C17 O18 031 sing 41 n n C17 H17 031 sing 42 n n O18 HO18 031 sing 43 n n N20 C19 031 sing 44 n n C19 C32 031 sing 45 n n C19 H19 031 sing 46 n n C21 N20 031 sing 47 n n N20 HN20 031 sing 48 n n O22 C21 031 doub 49 n n O23 C21 031 sing 50 n n C25 O23 031 sing 51 n n C25 C24 031 sing 52 n n C24 C31 031 sing 53 n n C24 H24 031 sing 54 n n C24 H24A 031 sing 55 n n C26 C25 031 sing 56 n n C25 H25 031 sing 57 n n C26 C27 031 sing 58 n n C26 H26 031 sing 59 n n C26 H26A 031 sing 60 n n C27 C31 031 sing 61 n n C27 O28 031 sing 62 n n C27 H27 031 sing 63 n n O28 C29 031 sing 64 n n C30 C29 031 sing 65 n n C29 H29 031 sing 66 n n C29 H29A 031 sing 67 n n C31 C30 031 sing 68 n n C30 H30 031 sing 69 n n C30 H30A 031 sing 70 n n C31 H31 031 sing 71 n n C32 C38 031 sing 72 n n C32 H32 031 sing 73 n n C32 H32A 031 sing 74 n n C38 C33 031 doub 75 n y C33 C34 031 sing 76 n y C33 H33 031 sing 77 n n C35 C34 031 doub 78 n y C34 H34 031 sing 79 n n C36 C35 031 sing 80 n y C35 H35 031 sing 81 n n C37 C36 031 doub 82 n y C36 H36 031 sing 83 n n C37 C38 031 sing 84 n y C37 H37 031 sing 85 n n # _atom_sites.entry_id 4J55 _atom_sites.fract_transf_matrix[1][1] 0.034914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015159 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 031 A 1 201 201 031 031 . D 2 031 A 1 202 203 031 031 . E 3 HOH A 1 301 1003 HOH HOH . E 3 HOH A 2 302 1005 HOH HOH . E 3 HOH A 3 303 1006 HOH HOH . E 3 HOH A 4 304 1007 HOH HOH . E 3 HOH A 5 305 1008 HOH HOH . E 3 HOH A 6 306 1009 HOH HOH . E 3 HOH A 7 307 1010 HOH HOH . E 3 HOH A 8 308 1011 HOH HOH . E 3 HOH A 9 309 1014 HOH HOH . E 3 HOH A 10 310 1015 HOH HOH . E 3 HOH A 11 311 1020 HOH HOH . E 3 HOH A 12 312 1022 HOH HOH . E 3 HOH A 13 313 1025 HOH HOH . E 3 HOH A 14 314 1026 HOH HOH . E 3 HOH A 15 315 1028 HOH HOH . E 3 HOH A 16 316 1029 HOH HOH . E 3 HOH A 17 317 1032 HOH HOH . E 3 HOH A 18 318 1034 HOH HOH . E 3 HOH A 19 319 1035 HOH HOH . E 3 HOH A 20 320 1037 HOH HOH . E 3 HOH A 21 321 1038 HOH HOH . E 3 HOH A 22 322 1039 HOH HOH . E 3 HOH A 23 323 1040 HOH HOH . E 3 HOH A 24 324 1041 HOH HOH . E 3 HOH A 25 325 1046 HOH HOH . E 3 HOH A 26 326 1047 HOH HOH . E 3 HOH A 27 327 1048 HOH HOH . E 3 HOH A 28 328 1051 HOH HOH . E 3 HOH A 29 329 1052 HOH HOH . E 3 HOH A 30 330 1056 HOH HOH . E 3 HOH A 31 331 1058 HOH HOH . E 3 HOH A 32 332 1059 HOH HOH . E 3 HOH A 33 333 1060 HOH HOH . E 3 HOH A 34 334 1061 HOH HOH . E 3 HOH A 35 335 1062 HOH HOH . E 3 HOH A 36 336 1065 HOH HOH . E 3 HOH A 37 337 1066 HOH HOH . E 3 HOH A 38 338 1067 HOH HOH . E 3 HOH A 39 339 1069 HOH HOH . E 3 HOH A 40 340 1073 HOH HOH . E 3 HOH A 41 341 1074 HOH HOH . E 3 HOH A 42 342 1077 HOH HOH . E 3 HOH A 43 343 1078 HOH HOH . E 3 HOH A 44 344 1080 HOH HOH . E 3 HOH A 45 345 1086 HOH HOH . E 3 HOH A 46 346 1092 HOH HOH . E 3 HOH A 47 347 1095 HOH HOH . E 3 HOH A 48 348 1096 HOH HOH . E 3 HOH A 49 349 1097 HOH HOH . E 3 HOH A 50 350 1098 HOH HOH . E 3 HOH A 51 351 1099 HOH HOH . E 3 HOH A 52 352 1101 HOH HOH . E 3 HOH A 53 353 1102 HOH HOH . E 3 HOH A 54 354 1104 HOH HOH . E 3 HOH A 55 355 1107 HOH HOH . E 3 HOH A 56 356 1108 HOH HOH . E 3 HOH A 57 357 1109 HOH HOH . E 3 HOH A 58 358 1114 HOH HOH . E 3 HOH A 59 359 1122 HOH HOH . E 3 HOH A 60 360 1123 HOH HOH . E 3 HOH A 61 361 1125 HOH HOH . F 3 HOH B 1 1001 1001 HOH HOH . F 3 HOH B 2 1002 1002 HOH HOH . F 3 HOH B 3 1003 1004 HOH HOH . F 3 HOH B 4 1004 1012 HOH HOH . F 3 HOH B 5 1005 1013 HOH HOH . F 3 HOH B 6 1006 1016 HOH HOH . F 3 HOH B 7 1007 1017 HOH HOH . F 3 HOH B 8 1008 1018 HOH HOH . F 3 HOH B 9 1009 1019 HOH HOH . F 3 HOH B 10 1010 1021 HOH HOH . F 3 HOH B 11 1011 1023 HOH HOH . F 3 HOH B 12 1012 1024 HOH HOH . F 3 HOH B 13 1013 1027 HOH HOH . F 3 HOH B 14 1014 1030 HOH HOH . F 3 HOH B 15 1015 1031 HOH HOH . F 3 HOH B 16 1016 1033 HOH HOH . F 3 HOH B 17 1017 1036 HOH HOH . F 3 HOH B 18 1018 1042 HOH HOH . F 3 HOH B 19 1019 1043 HOH HOH . F 3 HOH B 20 1020 1044 HOH HOH . F 3 HOH B 21 1021 1045 HOH HOH . F 3 HOH B 22 1022 1049 HOH HOH . F 3 HOH B 23 1023 1050 HOH HOH . F 3 HOH B 24 1024 1053 HOH HOH . F 3 HOH B 25 1025 1054 HOH HOH . F 3 HOH B 26 1026 1055 HOH HOH . F 3 HOH B 27 1027 1057 HOH HOH . F 3 HOH B 28 1028 1063 HOH HOH . F 3 HOH B 29 1029 1064 HOH HOH . F 3 HOH B 30 1030 1068 HOH HOH . F 3 HOH B 31 1031 1070 HOH HOH . F 3 HOH B 32 1032 1071 HOH HOH . F 3 HOH B 33 1033 1072 HOH HOH . F 3 HOH B 34 1034 1076 HOH HOH . F 3 HOH B 35 1035 1079 HOH HOH . F 3 HOH B 36 1036 1081 HOH HOH . F 3 HOH B 37 1037 1082 HOH HOH . F 3 HOH B 38 1038 1083 HOH HOH . F 3 HOH B 39 1039 1084 HOH HOH . F 3 HOH B 40 1040 1085 HOH HOH . F 3 HOH B 41 1041 1087 HOH HOH . F 3 HOH B 42 1042 1088 HOH HOH . F 3 HOH B 43 1043 1089 HOH HOH . F 3 HOH B 44 1044 1090 HOH HOH . F 3 HOH B 45 1045 1091 HOH HOH . F 3 HOH B 46 1046 1094 HOH HOH . F 3 HOH B 47 1047 1100 HOH HOH . F 3 HOH B 48 1048 1105 HOH HOH . F 3 HOH B 49 1049 1110 HOH HOH . F 3 HOH B 50 1050 1111 HOH HOH . F 3 HOH B 51 1051 1113 HOH HOH . F 3 HOH B 52 1052 1116 HOH HOH . F 3 HOH B 53 1053 1117 HOH HOH . F 3 HOH B 54 1054 1120 HOH HOH . F 3 HOH B 55 1055 1121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O39 031 . . . C 2 -10.311 -6.792 0.976 1 13.89 ? O39 031 201 A 1 HETATM 2 C C40 031 . . . C 2 -9.187 -7.496 0.467 1 17.49 ? C40 031 201 A 1 HETATM 3 C C2 031 . . . C 2 -10.878 -7.337 2.081 1 14.16 ? C2 031 201 A 1 HETATM 4 C C3 031 . . . C 2 -10.327 -8.39 2.793 1 12.65 ? C3 031 201 A 1 HETATM 5 C C4 031 . . . C 2 -10.935 -8.767 4.004 1 12.91 ? C4 031 201 A 1 HETATM 6 C C5 031 . . . C 2 -11.967 -8.033 4.53 1 12.94 ? C5 031 201 A 1 HETATM 7 C C6 031 . . . C 2 -12.532 -6.98 3.816 1 13.83 ? C6 031 201 A 1 HETATM 8 C C7 031 . . . C 2 -11.972 -6.649 2.593 1 12.26 ? C7 031 201 A 1 HETATM 9 S S8 031 . . . C 2 -12.632 -8.475 6.1 1 13.44 ? S8 031 201 A 1 HETATM 10 O O9 031 . . . C 2 -14.1 -8.379 6.062 1 15.09 ? O9 031 201 A 1 HETATM 11 O O10 031 . . . C 2 -12.106 -9.802 6.504 1 15.09 ? O10 031 201 A 1 HETATM 12 N N11 031 . . . C 2 -12.011 -7.416 7.192 1 12.79 ? N11 031 201 A 1 HETATM 13 C C12 031 . . . C 2 -10.582 -7.293 7.21 1 15.59 ? C12 031 201 A 1 HETATM 14 C C13 031 . . . C 2 -10.075 -6.812 8.596 1 15.78 ? C13 031 201 A 1 HETATM 15 C C14 031 . . . C 2 -10.156 -7.99 9.579 1 17.26 ? C14 031 201 A 1 HETATM 16 N N15 031 . . . C 2 -8.634 -6.547 8.442 1 17.09 ? N15 031 201 A 1 HETATM 17 C C45 031 . . . C 2 -7.911 -7.516 8.961 1 21.26 ? C45 031 201 A 1 HETATM 18 O O46 031 . . . C 2 -6.681 -7.5 8.972 1 23.56 ? O46 031 201 A 1 HETATM 19 C C47 031 . . . C 2 -8.766 -8.63 9.559 1 19.42 ? C47 031 201 A 1 HETATM 20 C C16 031 . . . C 2 -12.752 -6.191 7.387 1 13.42 ? C16 031 201 A 1 HETATM 21 C C17 031 . . . C 2 -13.302 -6.139 8.837 1 12 ? C17 031 201 A 1 HETATM 22 O O18 031 . . . C 2 -13.707 -4.773 9.148 1 14.17 ? O18 031 201 A 1 HETATM 23 C C19 031 . . . C 2 -14.54 -7.02 9.027 1 11.31 ? C19 031 201 A 1 HETATM 24 N N20 031 . . . C 2 -14.841 -7.042 10.469 1 12.01 ? N20 031 201 A 1 HETATM 25 C C21 031 . . . C 2 -14.536 -8.063 11.277 1 13.09 ? C21 031 201 A 1 HETATM 26 O O22 031 . . . C 2 -13.877 -9.06 10.966 1 13.55 ? O22 031 201 A 1 HETATM 27 O O23 031 . . . C 2 -15 -7.892 12.519 1 12.69 ? O23 031 201 A 1 HETATM 28 C C24 031 . . . C 2 -16.028 -10.009 13.061 1 16.4 ? C24 031 201 A 1 HETATM 29 C C25 031 . . . C 2 -14.942 -8.998 13.414 1 14.46 ? C25 031 201 A 1 HETATM 30 C C26 031 . . . C 2 -15.322 -8.518 14.851 1 14.1 ? C26 031 201 A 1 HETATM 31 C C27 031 . . . C 2 -16.853 -8.578 14.85 1 16.9 ? C27 031 201 A 1 HETATM 32 O O28 031 . . . C 2 -17.379 -7.407 14.215 1 14.92 ? O28 031 201 A 1 HETATM 33 C C29 031 . . . C 2 -18.17 -7.758 13.083 1 18.09 ? C29 031 201 A 1 HETATM 34 C C30 031 . . . C 2 -18.476 -9.243 13.27 1 17.64 ? C30 031 201 A 1 HETATM 35 C C31 031 . . . C 2 -17.224 -9.762 13.961 1 16.46 ? C31 031 201 A 1 HETATM 36 C C32 031 . . . C 2 -15.793 -6.693 8.226 1 11.92 ? C32 031 201 A 1 HETATM 37 C C33 031 . . . C 2 -16.871 -8.975 8.014 1 18.74 ? C33 031 201 A 1 HETATM 38 C C34 031 . . . C 2 -17.833 -9.948 8.314 1 20.75 ? C34 031 201 A 1 HETATM 39 C C35 031 . . . C 2 -18.867 -9.645 9.206 1 18.16 ? C35 031 201 A 1 HETATM 40 C C36 031 . . . C 2 -18.926 -8.345 9.69 1 21.37 ? C36 031 201 A 1 HETATM 41 C C37 031 . . . C 2 -18.038 -7.338 9.287 1 16.25 ? C37 031 201 A 1 HETATM 42 C C38 031 . . . C 2 -16.924 -7.696 8.517 1 13.56 ? C38 031 201 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 773 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 42 #