data_4J57
#
_model_server_result.job_id            kbCNddTD7u6TKd2dl25EtA 
_model_server_result.datetime_utc      '2024-12-26 23:22:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j57 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":600}' 
#
_entry.id    4J57 
#
_exptl.entry_id    4J57 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4J57 
_cell.length_a            91.8 
_cell.length_b            100.6 
_cell.length_c            142.83 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J57 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 88 A CYS 88 1_555 A SG CYS 93 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 535 A CYS 535 1_555 D SG CYS 40 F CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 B SG CYS 88 B CYS 88 1_555 B SG CYS 93 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf4 B SG CYS 535 B CYS 535 1_555 C SG CYS 40 E CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     4J57 
_atom_sites.fract_transf_matrix[1][1]    0.010893 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00994 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007001 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 FAD A 1 601 600 FAD FAD . 
F 4 GOL A 1 602 1 GOL GOL . 
G 3 FAD B 1 600 600 FAD FAD . 
H 5 HOH A 1 701 1 HOH HOH . 
H 5 HOH A 2 702 4 HOH HOH . 
H 5 HOH A 3 703 6 HOH HOH . 
H 5 HOH A 4 704 7 HOH HOH . 
H 5 HOH A 5 705 9 HOH HOH . 
H 5 HOH A 6 706 10 HOH HOH . 
H 5 HOH A 7 707 15 HOH HOH . 
H 5 HOH A 8 708 16 HOH HOH . 
H 5 HOH A 9 709 21 HOH HOH . 
H 5 HOH A 10 710 22 HOH HOH . 
H 5 HOH A 11 711 23 HOH HOH . 
H 5 HOH A 12 712 24 HOH HOH . 
H 5 HOH A 13 713 25 HOH HOH . 
H 5 HOH A 14 714 26 HOH HOH . 
I 5 HOH B 1 701 2 HOH HOH . 
I 5 HOH B 2 702 3 HOH HOH . 
I 5 HOH B 3 703 5 HOH HOH . 
I 5 HOH B 4 704 8 HOH HOH . 
I 5 HOH B 5 705 11 HOH HOH . 
I 5 HOH B 6 706 12 HOH HOH . 
I 5 HOH B 7 707 14 HOH HOH . 
I 5 HOH B 8 708 17 HOH HOH . 
I 5 HOH B 9 709 18 HOH HOH . 
I 5 HOH B 10 710 19 HOH HOH . 
I 5 HOH B 11 711 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . G 3 24.294 -2.676 170.057 1 33.83 ? PA FAD 600 B 1 
HETATM 2 O O1A FAD . . . G 3 22.913 -2.891 169.495 1 30.2 ? O1A FAD 600 B 1 
HETATM 3 O O2A FAD . . . G 3 24.78 -1.298 169.665 1 43.39 ? O2A FAD 600 B 1 
HETATM 4 O O5B FAD . . . G 3 25.276 -3.712 169.404 1 35.68 ? O5B FAD 600 B 1 
HETATM 5 C C5B FAD . . . G 3 25.376 -5.031 169.805 1 32.33 ? C5B FAD 600 B 1 
HETATM 6 C C4B FAD . . . G 3 26.413 -5.793 169.074 1 35.89 ? C4B FAD 600 B 1 
HETATM 7 O O4B FAD . . . G 3 26.321 -7.118 169.464 1 39.77 ? O4B FAD 600 B 1 
HETATM 8 C C3B FAD . . . G 3 26.162 -5.759 167.622 1 38.92 ? C3B FAD 600 B 1 
HETATM 9 O O3B FAD . . . G 3 27.362 -5.373 166.889 1 31.96 ? O3B FAD 600 B 1 
HETATM 10 C C2B FAD . . . G 3 25.72 -7.025 167.306 1 38.05 ? C2B FAD 600 B 1 
HETATM 11 O O2B FAD . . . G 3 26.049 -7.363 165.978 1 37.94 ? O2B FAD 600 B 1 
HETATM 12 C C1B FAD . . . G 3 26.434 -7.895 168.314 1 37.12 ? C1B FAD 600 B 1 
HETATM 13 N N9A FAD . . . G 3 25.967 -9.27 168.611 1 43.23 ? N9A FAD 600 B 1 
HETATM 14 C C8A FAD . . . G 3 24.729 -9.71 168.906 1 35.31 ? C8A FAD 600 B 1 
HETATM 15 N N7A FAD . . . G 3 24.807 -11.024 169.141 1 33.45 ? N7A FAD 600 B 1 
HETATM 16 C C5A FAD . . . G 3 26.103 -11.435 169.019 1 38.28 ? C5A FAD 600 B 1 
HETATM 17 C C6A FAD . . . G 3 26.767 -12.683 169.154 1 38.87 ? C6A FAD 600 B 1 
HETATM 18 N N6A FAD . . . G 3 26.025 -13.86 169.498 1 31.6 ? N6A FAD 600 B 1 
HETATM 19 N N1A FAD . . . G 3 28.104 -12.763 168.954 1 40.69 ? N1A FAD 600 B 1 
HETATM 20 C C2A FAD . . . G 3 28.803 -11.652 168.64 1 40.3 ? C2A FAD 600 B 1 
HETATM 21 N N3A FAD . . . G 3 28.215 -10.442 168.501 1 36.57 ? N3A FAD 600 B 1 
HETATM 22 C C4A FAD . . . G 3 26.865 -10.305 168.682 1 42.07 ? C4A FAD 600 B 1 
HETATM 23 N N1 FAD . . . G 3 21.007 6.525 170.035 1 38.93 ? N1 FAD 600 B 1 
HETATM 24 C C2 FAD . . . G 3 21.41 7.774 170.31 1 36.59 ? C2 FAD 600 B 1 
HETATM 25 O O2 FAD . . . G 3 21.929 8.069 171.576 1 35.13 ? O2 FAD 600 B 1 
HETATM 26 N N3 FAD . . . G 3 21.312 8.744 169.402 1 35.83 ? N3 FAD 600 B 1 
HETATM 27 C C4 FAD . . . G 3 20.801 8.468 168.191 1 39.2 ? C4 FAD 600 B 1 
HETATM 28 O O4 FAD . . . G 3 20.693 9.46 167.232 1 40.25 ? O4 FAD 600 B 1 
HETATM 29 C C4X FAD . . . G 3 20.379 7.174 167.866 1 43.55 ? C4X FAD 600 B 1 
HETATM 30 N N5 FAD . . . G 3 19.875 6.915 166.645 1 40.42 ? N5 FAD 600 B 1 
HETATM 31 C C5X FAD . . . G 3 19.477 5.662 166.342 1 40.2 ? C5X FAD 600 B 1 
HETATM 32 C C6 FAD . . . G 3 18.975 5.445 165.058 1 32.82 ? C6 FAD 600 B 1 
HETATM 33 C C7 FAD . . . G 3 18.55 4.205 164.66 1 33.78 ? C7 FAD 600 B 1 
HETATM 34 C C7M FAD . . . G 3 18.013 4.021 163.271 1 38.56 ? C7M FAD 600 B 1 
HETATM 35 C C8 FAD . . . G 3 18.625 3.151 165.568 1 39.85 ? C8 FAD 600 B 1 
HETATM 36 C C8M FAD . . . G 3 18.171 1.778 165.203 1 34.59 ? C8M FAD 600 B 1 
HETATM 37 C C9 FAD . . . G 3 19.131 3.366 166.855 1 38.98 ? C9 FAD 600 B 1 
HETATM 38 C C9A FAD . . . G 3 19.574 4.624 167.277 1 39.01 ? C9A FAD 600 B 1 
HETATM 39 N N10 FAD . . . G 3 20.083 4.882 168.54 1 40.75 ? N10 FAD 600 B 1 
HETATM 40 C C10 FAD . . . G 3 20.49 6.164 168.826 1 43.33 ? C10 FAD 600 B 1 
HETATM 41 C C1' FAD . . . G 3 20.237 3.864 169.611 1 38.07 ? C1' FAD 600 B 1 
HETATM 42 C C2' FAD . . . G 3 21.634 3.296 169.88 1 39.3 ? C2' FAD 600 B 1 
HETATM 43 O O2' FAD . . . G 3 22.26 2.984 168.661 1 41.27 ? O2' FAD 600 B 1 
HETATM 44 C C3' FAD . . . G 3 21.722 2.061 170.785 1 39.78 ? C3' FAD 600 B 1 
HETATM 45 O O3' FAD . . . G 3 21.187 2.309 172.027 1 36.95 ? O3' FAD 600 B 1 
HETATM 46 C C4' FAD . . . G 3 23.161 1.643 170.971 1 37.58 ? C4' FAD 600 B 1 
HETATM 47 O O4' FAD . . . G 3 23.586 0.928 169.87 1 39.2 ? O4' FAD 600 B 1 
HETATM 48 C C5' FAD . . . G 3 23.381 0.792 172.185 1 37.58 ? C5' FAD 600 B 1 
HETATM 49 O O5' FAD . . . G 3 23.206 -0.571 172.052 1 32.91 ? O5' FAD 600 B 1 
HETATM 50 P P FAD . . . G 3 24.223 -1.615 172.657 1 32.95 ? P FAD 600 B 1 
HETATM 51 O O1P FAD . . . G 3 25.58 -1.046 172.965 1 29.43 ? O1P FAD 600 B 1 
HETATM 52 O O2P FAD . . . G 3 23.579 -2.099 173.949 1 34.75 ? O2P FAD 600 B 1 
HETATM 53 O O3P FAD . . . G 3 24.352 -2.822 171.633 1 37.61 ? O3P FAD 600 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    73 
_model_server_stats.query_time_ms           1157 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           53 
#