data_4J5A # _model_server_result.job_id dXFiJ6aMEEISc0Q1aJtBmQ _model_server_result.datetime_utc '2025-04-17 21:37:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4J5A # _exptl.entry_id 4J5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J5A _cell.length_a 57.09 _cell.length_b 57.09 _cell.length_c 88.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 143 n n S C1 DMS sing 144 n n S C2 DMS sing 145 n n C1 H11 DMS sing 146 n n C1 H12 DMS sing 147 n n C1 H13 DMS sing 148 n n C2 H21 DMS sing 149 n n C2 H22 DMS sing 150 n n C2 H23 DMS sing 151 n n # _atom_sites.entry_id 4J5A _atom_sites.fract_transf_matrix[1][1] 0.017516 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 67Z X 1 301 1 67Z 67Z . C 3 DMS X 1 302 2 DMS DMS . D 4 HOH X 1 401 1 HOH HOH . D 4 HOH X 2 402 2 HOH HOH . D 4 HOH X 3 403 3 HOH HOH . D 4 HOH X 4 404 5 HOH HOH . D 4 HOH X 5 405 6 HOH HOH . D 4 HOH X 6 406 7 HOH HOH . D 4 HOH X 7 407 8 HOH HOH . D 4 HOH X 8 408 11 HOH HOH . D 4 HOH X 9 409 12 HOH HOH . D 4 HOH X 10 410 13 HOH HOH . D 4 HOH X 11 411 16 HOH HOH . D 4 HOH X 12 412 17 HOH HOH . D 4 HOH X 13 413 18 HOH HOH . D 4 HOH X 14 414 19 HOH HOH . D 4 HOH X 15 415 20 HOH HOH . D 4 HOH X 16 416 22 HOH HOH . D 4 HOH X 17 417 23 HOH HOH . D 4 HOH X 18 418 24 HOH HOH . D 4 HOH X 19 419 27 HOH HOH . D 4 HOH X 20 420 28 HOH HOH . D 4 HOH X 21 421 29 HOH HOH . D 4 HOH X 22 422 30 HOH HOH . D 4 HOH X 23 423 31 HOH HOH . D 4 HOH X 24 424 32 HOH HOH . D 4 HOH X 25 425 34 HOH HOH . D 4 HOH X 26 426 35 HOH HOH . D 4 HOH X 27 427 36 HOH HOH . D 4 HOH X 28 428 37 HOH HOH . D 4 HOH X 29 429 38 HOH HOH . D 4 HOH X 30 430 39 HOH HOH . D 4 HOH X 31 431 40 HOH HOH . D 4 HOH X 32 432 41 HOH HOH . D 4 HOH X 33 433 42 HOH HOH . D 4 HOH X 34 434 43 HOH HOH . D 4 HOH X 35 435 44 HOH HOH . D 4 HOH X 36 436 45 HOH HOH . D 4 HOH X 37 437 46 HOH HOH . D 4 HOH X 38 438 47 HOH HOH . D 4 HOH X 39 439 48 HOH HOH . D 4 HOH X 40 440 49 HOH HOH . D 4 HOH X 41 441 50 HOH HOH . D 4 HOH X 42 442 51 HOH HOH . D 4 HOH X 43 443 52 HOH HOH . D 4 HOH X 44 444 53 HOH HOH . D 4 HOH X 45 445 54 HOH HOH . D 4 HOH X 46 446 55 HOH HOH . D 4 HOH X 47 447 56 HOH HOH . D 4 HOH X 48 448 57 HOH HOH . D 4 HOH X 49 449 58 HOH HOH . D 4 HOH X 50 450 59 HOH HOH . D 4 HOH X 51 451 60 HOH HOH . D 4 HOH X 52 452 61 HOH HOH . D 4 HOH X 53 453 62 HOH HOH . D 4 HOH X 54 454 63 HOH HOH . D 4 HOH X 55 455 64 HOH HOH . D 4 HOH X 56 456 65 HOH HOH . D 4 HOH X 57 457 66 HOH HOH . D 4 HOH X 58 458 67 HOH HOH . D 4 HOH X 59 459 69 HOH HOH . D 4 HOH X 60 460 70 HOH HOH . D 4 HOH X 61 461 71 HOH HOH . D 4 HOH X 62 462 72 HOH HOH . D 4 HOH X 63 463 73 HOH HOH . D 4 HOH X 64 464 74 HOH HOH . D 4 HOH X 65 465 75 HOH HOH . D 4 HOH X 66 466 76 HOH HOH . D 4 HOH X 67 467 77 HOH HOH . D 4 HOH X 68 468 78 HOH HOH . D 4 HOH X 69 469 79 HOH HOH . D 4 HOH X 70 470 80 HOH HOH . D 4 HOH X 71 471 81 HOH HOH . D 4 HOH X 72 472 83 HOH HOH . D 4 HOH X 73 473 84 HOH HOH . D 4 HOH X 74 474 85 HOH HOH . D 4 HOH X 75 475 86 HOH HOH . D 4 HOH X 76 476 87 HOH HOH . D 4 HOH X 77 477 89 HOH HOH . D 4 HOH X 78 478 91 HOH HOH . D 4 HOH X 79 479 92 HOH HOH . D 4 HOH X 80 480 94 HOH HOH . D 4 HOH X 81 481 95 HOH HOH . D 4 HOH X 82 482 96 HOH HOH . D 4 HOH X 83 483 97 HOH HOH . D 4 HOH X 84 484 98 HOH HOH . D 4 HOH X 85 485 99 HOH HOH . D 4 HOH X 86 486 101 HOH HOH . D 4 HOH X 87 487 102 HOH HOH . D 4 HOH X 88 488 103 HOH HOH . D 4 HOH X 89 489 105 HOH HOH . D 4 HOH X 90 490 106 HOH HOH . D 4 HOH X 91 491 107 HOH HOH . D 4 HOH X 92 492 108 HOH HOH . D 4 HOH X 93 493 109 HOH HOH . D 4 HOH X 94 494 110 HOH HOH . D 4 HOH X 95 495 111 HOH HOH . D 4 HOH X 96 496 112 HOH HOH . D 4 HOH X 97 497 113 HOH HOH . D 4 HOH X 98 498 114 HOH HOH . D 4 HOH X 99 499 115 HOH HOH . D 4 HOH X 100 500 116 HOH HOH . D 4 HOH X 101 501 117 HOH HOH . D 4 HOH X 102 502 118 HOH HOH . D 4 HOH X 103 503 119 HOH HOH . D 4 HOH X 104 504 120 HOH HOH . D 4 HOH X 105 505 121 HOH HOH . D 4 HOH X 106 506 122 HOH HOH . D 4 HOH X 107 507 123 HOH HOH . D 4 HOH X 108 508 124 HOH HOH . D 4 HOH X 109 509 125 HOH HOH . D 4 HOH X 110 510 126 HOH HOH . D 4 HOH X 111 511 127 HOH HOH . D 4 HOH X 112 512 128 HOH HOH . D 4 HOH X 113 513 129 HOH HOH . D 4 HOH X 114 514 130 HOH HOH . D 4 HOH X 115 515 131 HOH HOH . D 4 HOH X 116 516 132 HOH HOH . D 4 HOH X 117 517 133 HOH HOH . D 4 HOH X 118 518 134 HOH HOH . D 4 HOH X 119 519 136 HOH HOH . D 4 HOH X 120 520 137 HOH HOH . D 4 HOH X 121 521 139 HOH HOH . D 4 HOH X 122 522 140 HOH HOH . D 4 HOH X 123 523 141 HOH HOH . D 4 HOH X 124 524 142 HOH HOH . D 4 HOH X 125 525 143 HOH HOH . D 4 HOH X 126 526 144 HOH HOH . D 4 HOH X 127 527 145 HOH HOH . D 4 HOH X 128 528 146 HOH HOH . D 4 HOH X 129 529 147 HOH HOH . D 4 HOH X 130 530 148 HOH HOH . D 4 HOH X 131 531 149 HOH HOH . D 4 HOH X 132 532 150 HOH HOH . D 4 HOH X 133 533 151 HOH HOH . D 4 HOH X 134 534 152 HOH HOH . D 4 HOH X 135 535 153 HOH HOH . D 4 HOH X 136 536 154 HOH HOH . D 4 HOH X 137 537 155 HOH HOH . D 4 HOH X 138 538 157 HOH HOH . D 4 HOH X 139 539 158 HOH HOH . D 4 HOH X 140 540 159 HOH HOH . D 4 HOH X 141 541 160 HOH HOH . D 4 HOH X 142 542 162 HOH HOH . D 4 HOH X 143 543 163 HOH HOH . D 4 HOH X 144 544 164 HOH HOH . D 4 HOH X 145 545 165 HOH HOH . D 4 HOH X 146 546 166 HOH HOH . D 4 HOH X 147 547 167 HOH HOH . D 4 HOH X 148 548 168 HOH HOH . D 4 HOH X 149 549 169 HOH HOH . D 4 HOH X 150 550 170 HOH HOH . D 4 HOH X 151 551 171 HOH HOH . D 4 HOH X 152 552 172 HOH HOH . D 4 HOH X 153 553 174 HOH HOH . D 4 HOH X 154 554 176 HOH HOH . D 4 HOH X 155 555 178 HOH HOH . D 4 HOH X 156 556 179 HOH HOH . D 4 HOH X 157 557 180 HOH HOH . D 4 HOH X 158 558 185 HOH HOH . D 4 HOH X 159 559 186 HOH HOH . D 4 HOH X 160 560 187 HOH HOH . D 4 HOH X 161 561 188 HOH HOH . D 4 HOH X 162 562 189 HOH HOH . D 4 HOH X 163 563 191 HOH HOH . D 4 HOH X 164 564 192 HOH HOH . D 4 HOH X 165 565 193 HOH HOH . D 4 HOH X 166 566 194 HOH HOH . D 4 HOH X 167 567 195 HOH HOH . D 4 HOH X 168 568 196 HOH HOH . D 4 HOH X 169 569 197 HOH HOH . D 4 HOH X 170 570 198 HOH HOH . D 4 HOH X 171 571 199 HOH HOH . D 4 HOH X 172 572 201 HOH HOH . D 4 HOH X 173 573 202 HOH HOH . D 4 HOH X 174 574 203 HOH HOH . D 4 HOH X 175 575 204 HOH HOH . D 4 HOH X 176 576 205 HOH HOH . D 4 HOH X 177 577 206 HOH HOH . D 4 HOH X 178 578 207 HOH HOH . D 4 HOH X 179 579 208 HOH HOH . D 4 HOH X 180 580 210 HOH HOH . D 4 HOH X 181 581 212 HOH HOH . D 4 HOH X 182 582 216 HOH HOH . D 4 HOH X 183 583 218 HOH HOH . D 4 HOH X 184 584 220 HOH HOH . D 4 HOH X 185 585 227 HOH HOH . D 4 HOH X 186 586 229 HOH HOH . D 4 HOH X 187 587 231 HOH HOH . D 4 HOH X 188 588 233 HOH HOH . D 4 HOH X 189 589 236 HOH HOH . D 4 HOH X 190 590 237 HOH HOH . D 4 HOH X 191 591 238 HOH HOH . D 4 HOH X 192 592 240 HOH HOH . D 4 HOH X 193 593 241 HOH HOH . D 4 HOH X 194 594 242 HOH HOH . D 4 HOH X 195 595 243 HOH HOH . D 4 HOH X 196 596 244 HOH HOH . D 4 HOH X 197 597 245 HOH HOH . D 4 HOH X 198 598 246 HOH HOH . D 4 HOH X 199 599 248 HOH HOH . D 4 HOH X 200 600 249 HOH HOH . D 4 HOH X 201 601 250 HOH HOH . D 4 HOH X 202 602 251 HOH HOH . D 4 HOH X 203 603 253 HOH HOH . D 4 HOH X 204 604 255 HOH HOH . D 4 HOH X 205 605 256 HOH HOH . D 4 HOH X 206 606 257 HOH HOH . D 4 HOH X 207 607 258 HOH HOH . D 4 HOH X 208 608 259 HOH HOH . D 4 HOH X 209 609 260 HOH HOH . D 4 HOH X 210 610 261 HOH HOH . D 4 HOH X 211 611 262 HOH HOH . D 4 HOH X 212 612 263 HOH HOH . D 4 HOH X 213 613 264 HOH HOH . D 4 HOH X 214 614 265 HOH HOH . D 4 HOH X 215 615 266 HOH HOH . D 4 HOH X 216 616 267 HOH HOH . D 4 HOH X 217 617 268 HOH HOH . D 4 HOH X 218 618 269 HOH HOH . D 4 HOH X 219 619 270 HOH HOH . D 4 HOH X 220 620 271 HOH HOH . D 4 HOH X 221 621 272 HOH HOH . D 4 HOH X 222 622 273 HOH HOH . D 4 HOH X 223 623 274 HOH HOH . D 4 HOH X 224 624 275 HOH HOH . D 4 HOH X 225 625 276 HOH HOH . D 4 HOH X 226 626 277 HOH HOH . D 4 HOH X 227 627 278 HOH HOH . D 4 HOH X 228 628 279 HOH HOH . D 4 HOH X 229 629 280 HOH HOH . D 4 HOH X 230 630 281 HOH HOH . D 4 HOH X 231 631 282 HOH HOH . D 4 HOH X 232 632 283 HOH HOH . D 4 HOH X 233 633 284 HOH HOH . D 4 HOH X 234 634 285 HOH HOH . D 4 HOH X 235 635 286 HOH HOH . D 4 HOH X 236 636 287 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 27.501 16.869 24.173 0.82 25.76 ? S DMS 302 X 1 HETATM 2 O O DMS . . . C 3 26.841 15.586 23.784 0.82 25.4 ? O DMS 302 X 1 HETATM 3 C C1 DMS . . . C 3 26.394 17.825 25.245 0.82 25.68 ? C1 DMS 302 X 1 HETATM 4 C C2 DMS . . . C 3 28.849 16.566 25.349 0.82 25.55 ? C2 DMS 302 X 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #