data_4J5H # _model_server_result.job_id UdKkcqNIvtAeUtkZfL0MDQ _model_server_result.datetime_utc '2024-11-08 07:13:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j5h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4J5H # _exptl.entry_id 4J5H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 273.368 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-decanoyl-L-homoserine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J5H _cell.length_a 54.825 _cell.length_b 55.444 _cell.length_c 80.396 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J5H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 108 A HIS 104 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc2 A ND1 HIS 110 A HIS 106 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc3 A NE2 HIS 113 A HIS 109 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc4 A NE2 HIS 173 A HIS 169 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc5 A OD2 ASP 195 A ASP 191 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc6 A OD1 ASP 195 A ASP 191 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc7 A OD2 ASP 195 A ASP 191 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc8 A NE2 HIS 239 A HIS 235 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc9 B ZN ZN . A ZN 301 1_555 D OXT 1K4 . A 1K4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? metalc ? metalc10 C ZN ZN . A ZN 302 1_555 D O 1K4 . A 1K4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? # _chem_comp.formula 'C14 H27 N O4' _chem_comp.formula_weight 273.368 _chem_comp.id 1K4 _chem_comp.mon_nstd_flag . _chem_comp.name N-decanoyl-L-homoserine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAG CB 1K4 sing 1 n n CAG OAD 1K4 sing 2 n n CB CA 1K4 sing 3 n n OXT C 1K4 doub 4 n n C CA 1K4 sing 5 n n C O 1K4 sing 6 n n CA N 1K4 sing 7 n n N CAQ 1K4 sing 8 n n CAQ OAB 1K4 doub 9 n n CAQ CAN 1K4 sing 10 n n CAN CAM 1K4 sing 11 n n CAL CAM 1K4 sing 12 n n CAL CAK 1K4 sing 13 n n CAK CAJ 1K4 sing 14 n n CAJ CAI 1K4 sing 15 n n CAI CAH 1K4 sing 16 n n CAH CAF 1K4 sing 17 n n CAF CAA 1K4 sing 18 n n O H1 1K4 sing 19 n n CA H2 1K4 sing 20 n n CB H3 1K4 sing 21 n n CB H4 1K4 sing 22 n n CAG H5 1K4 sing 23 n n CAG H6 1K4 sing 24 n n OAD H7 1K4 sing 25 n n N H8 1K4 sing 26 n n CAN H9 1K4 sing 27 n n CAN H10 1K4 sing 28 n n CAM H11 1K4 sing 29 n n CAM H12 1K4 sing 30 n n CAL H13 1K4 sing 31 n n CAL H14 1K4 sing 32 n n CAK H15 1K4 sing 33 n n CAK H16 1K4 sing 34 n n CAJ H17 1K4 sing 35 n n CAJ H18 1K4 sing 36 n n CAI H19 1K4 sing 37 n n CAI H20 1K4 sing 38 n n CAH H21 1K4 sing 39 n n CAH H22 1K4 sing 40 n n CAF H23 1K4 sing 41 n n CAF H24 1K4 sing 42 n n CAA H25 1K4 sing 43 n n CAA H26 1K4 sing 44 n n CAA H27 1K4 sing 45 n n # _atom_sites.entry_id 4J5H _atom_sites.fract_transf_matrix[1][1] 0.01824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 251 ZN ZN . C 2 ZN A 1 302 252 ZN ZN . D 3 1K4 A 1 303 253 1K4 0DH . E 4 GOL A 1 304 432 GOL GOL . F 4 GOL A 1 305 433 GOL GOL . G 4 GOL A 1 306 434 GOL GOL . H 4 GOL A 1 307 435 GOL GOL . I 4 GOL A 1 308 436 GOL GOL . J 4 GOL A 1 309 437 GOL GOL . K 4 GOL A 1 310 438 GOL GOL . L 4 GOL A 1 311 439 GOL GOL . M 5 HOH A 1 401 254 HOH HOH . M 5 HOH A 2 402 255 HOH HOH . M 5 HOH A 3 403 256 HOH HOH . M 5 HOH A 4 404 257 HOH HOH . M 5 HOH A 5 405 258 HOH HOH . M 5 HOH A 6 406 259 HOH HOH . M 5 HOH A 7 407 260 HOH HOH . M 5 HOH A 8 408 261 HOH HOH . M 5 HOH A 9 409 262 HOH HOH . M 5 HOH A 10 410 263 HOH HOH . M 5 HOH A 11 411 264 HOH HOH . M 5 HOH A 12 412 265 HOH HOH . M 5 HOH A 13 413 266 HOH HOH . M 5 HOH A 14 414 267 HOH HOH . M 5 HOH A 15 415 268 HOH HOH . M 5 HOH A 16 416 269 HOH HOH . M 5 HOH A 17 417 270 HOH HOH . M 5 HOH A 18 418 271 HOH HOH . M 5 HOH A 19 419 272 HOH HOH . M 5 HOH A 20 420 273 HOH HOH . M 5 HOH A 21 421 274 HOH HOH . M 5 HOH A 22 422 275 HOH HOH . M 5 HOH A 23 423 276 HOH HOH . M 5 HOH A 24 424 277 HOH HOH . M 5 HOH A 25 425 278 HOH HOH . M 5 HOH A 26 426 279 HOH HOH . M 5 HOH A 27 427 280 HOH HOH . M 5 HOH A 28 428 281 HOH HOH . M 5 HOH A 29 429 282 HOH HOH . M 5 HOH A 30 430 283 HOH HOH . M 5 HOH A 31 431 284 HOH HOH . M 5 HOH A 32 432 285 HOH HOH . M 5 HOH A 33 433 286 HOH HOH . M 5 HOH A 34 434 287 HOH HOH . M 5 HOH A 35 435 288 HOH HOH . M 5 HOH A 36 436 289 HOH HOH . M 5 HOH A 37 437 290 HOH HOH . M 5 HOH A 38 438 291 HOH HOH . M 5 HOH A 39 439 292 HOH HOH . M 5 HOH A 40 440 293 HOH HOH . M 5 HOH A 41 441 294 HOH HOH . M 5 HOH A 42 442 295 HOH HOH . M 5 HOH A 43 443 296 HOH HOH . M 5 HOH A 44 444 297 HOH HOH . M 5 HOH A 45 445 298 HOH HOH . M 5 HOH A 46 446 299 HOH HOH . M 5 HOH A 47 447 300 HOH HOH . M 5 HOH A 48 448 301 HOH HOH . M 5 HOH A 49 449 302 HOH HOH . M 5 HOH A 50 450 303 HOH HOH . M 5 HOH A 51 451 304 HOH HOH . M 5 HOH A 52 452 305 HOH HOH . M 5 HOH A 53 453 306 HOH HOH . M 5 HOH A 54 454 307 HOH HOH . M 5 HOH A 55 455 308 HOH HOH . M 5 HOH A 56 456 309 HOH HOH . M 5 HOH A 57 457 310 HOH HOH . M 5 HOH A 58 458 311 HOH HOH . M 5 HOH A 59 459 312 HOH HOH . M 5 HOH A 60 460 313 HOH HOH . M 5 HOH A 61 461 314 HOH HOH . M 5 HOH A 62 462 315 HOH HOH . M 5 HOH A 63 463 316 HOH HOH . M 5 HOH A 64 464 317 HOH HOH . M 5 HOH A 65 465 318 HOH HOH . M 5 HOH A 66 466 319 HOH HOH . M 5 HOH A 67 467 320 HOH HOH . M 5 HOH A 68 468 321 HOH HOH . M 5 HOH A 69 469 322 HOH HOH . M 5 HOH A 70 470 323 HOH HOH . M 5 HOH A 71 471 324 HOH HOH . M 5 HOH A 72 472 325 HOH HOH . M 5 HOH A 73 473 326 HOH HOH . M 5 HOH A 74 474 327 HOH HOH . M 5 HOH A 75 475 328 HOH HOH . M 5 HOH A 76 476 329 HOH HOH . M 5 HOH A 77 477 330 HOH HOH . M 5 HOH A 78 478 331 HOH HOH . M 5 HOH A 79 479 332 HOH HOH . M 5 HOH A 80 480 333 HOH HOH . M 5 HOH A 81 481 334 HOH HOH . M 5 HOH A 82 482 335 HOH HOH . M 5 HOH A 83 483 336 HOH HOH . M 5 HOH A 84 484 337 HOH HOH . M 5 HOH A 85 485 338 HOH HOH . M 5 HOH A 86 486 339 HOH HOH . M 5 HOH A 87 487 340 HOH HOH . M 5 HOH A 88 488 341 HOH HOH . M 5 HOH A 89 489 342 HOH HOH . M 5 HOH A 90 490 343 HOH HOH . M 5 HOH A 91 491 344 HOH HOH . M 5 HOH A 92 492 345 HOH HOH . M 5 HOH A 93 493 346 HOH HOH . M 5 HOH A 94 494 347 HOH HOH . M 5 HOH A 95 495 348 HOH HOH . M 5 HOH A 96 496 349 HOH HOH . M 5 HOH A 97 497 350 HOH HOH . M 5 HOH A 98 498 351 HOH HOH . M 5 HOH A 99 499 352 HOH HOH . M 5 HOH A 100 500 353 HOH HOH . M 5 HOH A 101 501 354 HOH HOH . M 5 HOH A 102 502 355 HOH HOH . M 5 HOH A 103 503 356 HOH HOH . M 5 HOH A 104 504 357 HOH HOH . M 5 HOH A 105 505 358 HOH HOH . M 5 HOH A 106 506 359 HOH HOH . M 5 HOH A 107 507 360 HOH HOH . M 5 HOH A 108 508 361 HOH HOH . M 5 HOH A 109 509 362 HOH HOH . M 5 HOH A 110 510 363 HOH HOH . M 5 HOH A 111 511 364 HOH HOH . M 5 HOH A 112 512 365 HOH HOH . M 5 HOH A 113 513 366 HOH HOH . M 5 HOH A 114 514 367 HOH HOH . M 5 HOH A 115 515 368 HOH HOH . M 5 HOH A 116 516 369 HOH HOH . M 5 HOH A 117 517 370 HOH HOH . M 5 HOH A 118 518 371 HOH HOH . M 5 HOH A 119 519 372 HOH HOH . M 5 HOH A 120 520 373 HOH HOH . M 5 HOH A 121 521 374 HOH HOH . M 5 HOH A 122 522 375 HOH HOH . M 5 HOH A 123 523 376 HOH HOH . M 5 HOH A 124 524 377 HOH HOH . M 5 HOH A 125 525 378 HOH HOH . M 5 HOH A 126 526 379 HOH HOH . M 5 HOH A 127 527 380 HOH HOH . M 5 HOH A 128 528 381 HOH HOH . M 5 HOH A 129 529 382 HOH HOH . M 5 HOH A 130 530 383 HOH HOH . M 5 HOH A 131 531 384 HOH HOH . M 5 HOH A 132 532 385 HOH HOH . M 5 HOH A 133 533 386 HOH HOH . M 5 HOH A 134 534 387 HOH HOH . M 5 HOH A 135 535 389 HOH HOH . M 5 HOH A 136 536 390 HOH HOH . M 5 HOH A 137 537 391 HOH HOH . M 5 HOH A 138 538 392 HOH HOH . M 5 HOH A 139 539 393 HOH HOH . M 5 HOH A 140 540 394 HOH HOH . M 5 HOH A 141 541 395 HOH HOH . M 5 HOH A 142 542 396 HOH HOH . M 5 HOH A 143 543 398 HOH HOH . M 5 HOH A 144 544 399 HOH HOH . M 5 HOH A 145 545 400 HOH HOH . M 5 HOH A 146 546 401 HOH HOH . M 5 HOH A 147 547 402 HOH HOH . M 5 HOH A 148 548 403 HOH HOH . M 5 HOH A 149 549 404 HOH HOH . M 5 HOH A 150 550 405 HOH HOH . M 5 HOH A 151 551 406 HOH HOH . M 5 HOH A 152 552 407 HOH HOH . M 5 HOH A 153 553 408 HOH HOH . M 5 HOH A 154 554 411 HOH HOH . M 5 HOH A 155 555 413 HOH HOH . M 5 HOH A 156 556 414 HOH HOH . M 5 HOH A 157 557 415 HOH HOH . M 5 HOH A 158 558 416 HOH HOH . M 5 HOH A 159 559 417 HOH HOH . M 5 HOH A 160 560 419 HOH HOH . M 5 HOH A 161 561 422 HOH HOH . M 5 HOH A 162 562 424 HOH HOH . M 5 HOH A 163 563 426 HOH HOH . M 5 HOH A 164 564 427 HOH HOH . M 5 HOH A 165 565 428 HOH HOH . M 5 HOH A 166 566 429 HOH HOH . M 5 HOH A 167 567 430 HOH HOH . M 5 HOH A 168 568 431 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 1K4 . . . D 3 -14.557 -4.784 13.528 1 22.36 ? O 1K4 303 A 1 HETATM 2 C C 1K4 . . . D 3 -14.58 -5.69 12.686 1 18.77 ? C 1K4 303 A 1 HETATM 3 O OXT 1K4 . . . D 3 -13.768 -5.664 11.702 1 23.58 ? OXT 1K4 303 A 1 HETATM 4 C CA 1K4 . . . D 3 -15.593 -6.804 12.879 1 16.65 ? CA 1K4 303 A 1 HETATM 5 C CB 1K4 . . . D 3 -16.328 -6.928 11.531 1 19.83 ? CB 1K4 303 A 1 HETATM 6 C CAG 1K4 . . . D 3 -17.107 -8.212 11.364 1 25.73 ? CAG 1K4 303 A 1 HETATM 7 O OAD 1K4 . . . D 3 -16.235 -9.316 11.6 1 25.11 ? OAD 1K4 303 A 1 HETATM 8 N N 1K4 . . . D 3 -16.608 -6.485 13.893 1 20.17 ? N 1K4 303 A 1 HETATM 9 C CAQ 1K4 . . . D 3 -16.33 -6.685 15.182 1 19.28 ? CAQ 1K4 303 A 1 HETATM 10 O OAB 1K4 . . . D 3 -15.275 -7.187 15.601 1 19.76 ? OAB 1K4 303 A 1 HETATM 11 C CAN 1K4 . . . D 3 -17.383 -6.27 16.164 1 24.17 ? CAN 1K4 303 A 1 HETATM 12 C CAM 1K4 . . . D 3 -17.417 -7.15 17.404 1 27.88 ? CAM 1K4 303 A 1 HETATM 13 C CAL 1K4 . . . D 3 -17.839 -8.564 17.019 1 32.97 ? CAL 1K4 303 A 1 HETATM 14 C CAK 1K4 . . . D 3 -18.083 -9.442 18.239 1 36.86 ? CAK 1K4 303 A 1 HETATM 15 C CAJ 1K4 . . . D 3 -17.079 -10.574 18.352 1 34.7 ? CAJ 1K4 303 A 1 HETATM 16 C CAI 1K4 . . . D 3 -17.545 -11.544 19.443 1 38.78 ? CAI 1K4 303 A 1 HETATM 17 C CAH 1K4 . . . D 3 -16.407 -11.904 20.39 1 38.74 ? CAH 1K4 303 A 1 HETATM 18 C CAF 1K4 . . . D 3 -16.622 -13.215 21.148 1 41.34 ? CAF 1K4 303 A 1 HETATM 19 C CAA 1K4 . . . D 3 -18.013 -13.375 21.72 1 44.08 ? CAA 1K4 303 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 19 #