data_4J5X # _model_server_result.job_id G9uTRFxC31P9zcrtn63dGA _model_server_result.datetime_utc '2024-12-13 21:41:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 4J5X # _exptl.entry_id 4J5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 504.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J5X _cell.length_a 70.09 _cell.length_b 120.3 _cell.length_c 175.79 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C24 H42 O7 P2' _chem_comp.formula_weight 504.534 _chem_comp.id SRL _chem_comp.mon_nstd_flag . _chem_comp.name '[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SR12813 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SRL doub 290 n y C1 C6 SRL sing 291 n y C1 C12 SRL sing 292 n n C2 C3 SRL sing 293 n y C2 O11 SRL sing 294 n n C3 C4 SRL doub 295 n y C3 C13 SRL sing 296 n n C4 C5 SRL sing 297 n y C4 HC4 SRL sing 298 n n C5 C6 SRL doub 299 n y C5 C7 SRL sing 300 n n C6 HC6 SRL sing 301 n n C7 C8 SRL doub 302 n n C7 HC7 SRL sing 303 n n C8 P9 SRL sing 304 n n C8 P10 SRL sing 305 n n P9 O20 SRL doub 306 n n P9 O21 SRL sing 307 n n P9 O24 SRL sing 308 n n P10 O27 SRL doub 309 n n P10 O28 SRL sing 310 n n P10 O31 SRL sing 311 n n O11 H11 SRL sing 312 n n C12 C14 SRL sing 313 n n C12 C15 SRL sing 314 n n C12 C16 SRL sing 315 n n C13 C17 SRL sing 316 n n C13 C18 SRL sing 317 n n C13 C19 SRL sing 318 n n C14 H141 SRL sing 319 n n C14 H142 SRL sing 320 n n C14 H143 SRL sing 321 n n C15 H151 SRL sing 322 n n C15 H152 SRL sing 323 n n C15 H153 SRL sing 324 n n C16 H161 SRL sing 325 n n C16 H162 SRL sing 326 n n C16 H163 SRL sing 327 n n C17 H171 SRL sing 328 n n C17 H172 SRL sing 329 n n C17 H173 SRL sing 330 n n C18 H181 SRL sing 331 n n C18 H182 SRL sing 332 n n C18 H183 SRL sing 333 n n C19 H191 SRL sing 334 n n C19 H192 SRL sing 335 n n C19 H193 SRL sing 336 n n O21 C22 SRL sing 337 n n C22 C23 SRL sing 338 n n C22 H221 SRL sing 339 n n C22 H222 SRL sing 340 n n C23 H231 SRL sing 341 n n C23 H232 SRL sing 342 n n C23 H233 SRL sing 343 n n O24 C25 SRL sing 344 n n C25 C26 SRL sing 345 n n C25 H251 SRL sing 346 n n C25 H252 SRL sing 347 n n C26 H261 SRL sing 348 n n C26 H262 SRL sing 349 n n C26 H263 SRL sing 350 n n O28 C29 SRL sing 351 n n C29 C30 SRL sing 352 n n C29 H291 SRL sing 353 n n C29 H292 SRL sing 354 n n C30 H301 SRL sing 355 n n C30 H302 SRL sing 356 n n C30 H303 SRL sing 357 n n O31 C32 SRL sing 358 n n C32 C33 SRL sing 359 n n C32 H321 SRL sing 360 n n C32 H322 SRL sing 361 n n C33 H331 SRL sing 362 n n C33 H332 SRL sing 363 n n C33 H333 SRL sing 364 n n # _atom_sites.entry_id 4J5X _atom_sites.fract_transf_matrix[1][1] 0.014267 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SRL A 1 501 1 SRL SRL . F 3 SRL B 1 501 1 SRL SRL . G 4 HOH D 1 501 1 HOH HOH . G 4 HOH D 2 502 7 HOH HOH . G 4 HOH D 3 503 9 HOH HOH . G 4 HOH D 4 504 12 HOH HOH . G 4 HOH D 5 505 14 HOH HOH . G 4 HOH D 6 506 15 HOH HOH . G 4 HOH D 7 507 29 HOH HOH . G 4 HOH D 8 508 32 HOH HOH . G 4 HOH D 9 509 35 HOH HOH . G 4 HOH D 10 510 36 HOH HOH . G 4 HOH D 11 511 37 HOH HOH . G 4 HOH D 12 512 45 HOH HOH . G 4 HOH D 13 513 48 HOH HOH . G 4 HOH D 14 514 53 HOH HOH . G 4 HOH D 15 515 54 HOH HOH . G 4 HOH D 16 516 60 HOH HOH . G 4 HOH D 17 517 68 HOH HOH . G 4 HOH D 18 518 71 HOH HOH . G 4 HOH D 19 519 72 HOH HOH . G 4 HOH D 20 520 76 HOH HOH . G 4 HOH D 21 521 82 HOH HOH . G 4 HOH D 22 522 88 HOH HOH . G 4 HOH D 23 523 89 HOH HOH . G 4 HOH D 24 524 90 HOH HOH . G 4 HOH D 25 525 91 HOH HOH . G 4 HOH D 26 526 93 HOH HOH . G 4 HOH D 27 527 95 HOH HOH . G 4 HOH D 28 528 102 HOH HOH . G 4 HOH D 29 529 120 HOH HOH . G 4 HOH D 30 530 127 HOH HOH . G 4 HOH D 31 531 131 HOH HOH . G 4 HOH D 32 532 132 HOH HOH . G 4 HOH D 33 533 134 HOH HOH . G 4 HOH D 34 534 135 HOH HOH . G 4 HOH D 35 535 137 HOH HOH . G 4 HOH D 36 536 146 HOH HOH . G 4 HOH D 37 537 148 HOH HOH . G 4 HOH D 38 538 149 HOH HOH . G 4 HOH D 39 539 156 HOH HOH . G 4 HOH D 40 540 164 HOH HOH . G 4 HOH D 41 541 167 HOH HOH . G 4 HOH D 42 542 168 HOH HOH . G 4 HOH D 43 543 171 HOH HOH . G 4 HOH D 44 544 172 HOH HOH . H 4 HOH C 1 501 10 HOH HOH . H 4 HOH C 2 502 13 HOH HOH . H 4 HOH C 3 503 16 HOH HOH . H 4 HOH C 4 504 19 HOH HOH . H 4 HOH C 5 505 20 HOH HOH . H 4 HOH C 6 506 21 HOH HOH . H 4 HOH C 7 507 28 HOH HOH . H 4 HOH C 8 508 30 HOH HOH . H 4 HOH C 9 509 39 HOH HOH . H 4 HOH C 10 510 42 HOH HOH . H 4 HOH C 11 511 46 HOH HOH . H 4 HOH C 12 512 59 HOH HOH . H 4 HOH C 13 513 61 HOH HOH . H 4 HOH C 14 514 62 HOH HOH . H 4 HOH C 15 515 66 HOH HOH . H 4 HOH C 16 516 74 HOH HOH . H 4 HOH C 17 517 79 HOH HOH . H 4 HOH C 18 518 87 HOH HOH . H 4 HOH C 19 519 96 HOH HOH . H 4 HOH C 20 520 97 HOH HOH . H 4 HOH C 21 521 104 HOH HOH . H 4 HOH C 22 522 109 HOH HOH . H 4 HOH C 23 523 111 HOH HOH . H 4 HOH C 24 524 112 HOH HOH . H 4 HOH C 25 525 115 HOH HOH . H 4 HOH C 26 526 117 HOH HOH . H 4 HOH C 27 527 119 HOH HOH . H 4 HOH C 28 528 121 HOH HOH . H 4 HOH C 29 529 122 HOH HOH . H 4 HOH C 30 530 123 HOH HOH . H 4 HOH C 31 531 133 HOH HOH . H 4 HOH C 32 532 155 HOH HOH . H 4 HOH C 33 533 159 HOH HOH . H 4 HOH C 34 534 173 HOH HOH . I 4 HOH A 1 601 3 HOH HOH . I 4 HOH A 2 602 6 HOH HOH . I 4 HOH A 3 603 8 HOH HOH . I 4 HOH A 4 604 17 HOH HOH . I 4 HOH A 5 605 18 HOH HOH . I 4 HOH A 6 606 23 HOH HOH . I 4 HOH A 7 607 25 HOH HOH . I 4 HOH A 8 608 27 HOH HOH . I 4 HOH A 9 609 43 HOH HOH . I 4 HOH A 10 610 51 HOH HOH . I 4 HOH A 11 611 56 HOH HOH . I 4 HOH A 12 612 58 HOH HOH . I 4 HOH A 13 613 65 HOH HOH . I 4 HOH A 14 614 69 HOH HOH . I 4 HOH A 15 615 73 HOH HOH . I 4 HOH A 16 616 75 HOH HOH . I 4 HOH A 17 617 78 HOH HOH . I 4 HOH A 18 618 80 HOH HOH . I 4 HOH A 19 619 81 HOH HOH . I 4 HOH A 20 620 99 HOH HOH . I 4 HOH A 21 621 105 HOH HOH . I 4 HOH A 22 622 107 HOH HOH . I 4 HOH A 23 623 114 HOH HOH . I 4 HOH A 24 624 124 HOH HOH . I 4 HOH A 25 625 128 HOH HOH . I 4 HOH A 26 626 129 HOH HOH . I 4 HOH A 27 627 130 HOH HOH . I 4 HOH A 28 628 142 HOH HOH . I 4 HOH A 29 629 144 HOH HOH . I 4 HOH A 30 630 150 HOH HOH . I 4 HOH A 31 631 151 HOH HOH . I 4 HOH A 32 632 154 HOH HOH . I 4 HOH A 33 633 157 HOH HOH . I 4 HOH A 34 634 158 HOH HOH . I 4 HOH A 35 635 160 HOH HOH . I 4 HOH A 36 636 161 HOH HOH . I 4 HOH A 37 637 162 HOH HOH . I 4 HOH A 38 638 165 HOH HOH . I 4 HOH A 39 639 166 HOH HOH . I 4 HOH A 40 640 170 HOH HOH . J 4 HOH B 1 601 2 HOH HOH . J 4 HOH B 2 602 4 HOH HOH . J 4 HOH B 3 603 5 HOH HOH . J 4 HOH B 4 604 11 HOH HOH . J 4 HOH B 5 605 22 HOH HOH . J 4 HOH B 6 606 24 HOH HOH . J 4 HOH B 7 607 26 HOH HOH . J 4 HOH B 8 608 31 HOH HOH . J 4 HOH B 9 609 33 HOH HOH . J 4 HOH B 10 610 34 HOH HOH . J 4 HOH B 11 611 38 HOH HOH . J 4 HOH B 12 612 40 HOH HOH . J 4 HOH B 13 613 41 HOH HOH . J 4 HOH B 14 614 44 HOH HOH . J 4 HOH B 15 615 47 HOH HOH . J 4 HOH B 16 616 49 HOH HOH . J 4 HOH B 17 617 50 HOH HOH . J 4 HOH B 18 618 52 HOH HOH . J 4 HOH B 19 619 55 HOH HOH . J 4 HOH B 20 620 57 HOH HOH . J 4 HOH B 21 621 63 HOH HOH . J 4 HOH B 22 622 64 HOH HOH . J 4 HOH B 23 623 67 HOH HOH . J 4 HOH B 24 624 70 HOH HOH . J 4 HOH B 25 625 77 HOH HOH . J 4 HOH B 26 626 83 HOH HOH . J 4 HOH B 27 627 86 HOH HOH . J 4 HOH B 28 628 92 HOH HOH . J 4 HOH B 29 629 94 HOH HOH . J 4 HOH B 30 630 98 HOH HOH . J 4 HOH B 31 631 100 HOH HOH . J 4 HOH B 32 632 101 HOH HOH . J 4 HOH B 33 633 103 HOH HOH . J 4 HOH B 34 634 106 HOH HOH . J 4 HOH B 35 635 108 HOH HOH . J 4 HOH B 36 636 110 HOH HOH . J 4 HOH B 37 637 116 HOH HOH . J 4 HOH B 38 638 125 HOH HOH . J 4 HOH B 39 639 147 HOH HOH . J 4 HOH B 40 640 153 HOH HOH . J 4 HOH B 41 641 163 HOH HOH . J 4 HOH B 42 642 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SRL . . . E 3 104.7 17.81 13.189 1 86.42 ? C1 SRL 501 A 1 HETATM 2 C C2 SRL . . . E 3 104.251 18.139 11.899 1 83.69 ? C2 SRL 501 A 1 HETATM 3 C C3 SRL . . . E 3 102.944 18.645 11.73 1 76.16 ? C3 SRL 501 A 1 HETATM 4 C C4 SRL . . . E 3 102.104 18.791 12.847 1 72.38 ? C4 SRL 501 A 1 HETATM 5 C C5 SRL . . . E 3 102.548 18.455 14.112 1 86.57 ? C5 SRL 501 A 1 HETATM 6 C C6 SRL . . . E 3 103.826 17.972 14.264 1 87.81 ? C6 SRL 501 A 1 HETATM 7 C C7 SRL . . . E 3 101.696 18.591 15.347 1 81.34 ? C7 SRL 501 A 1 HETATM 8 C C8 SRL . . . E 3 100.808 17.581 15.703 1 67.75 ? C8 SRL 501 A 1 HETATM 9 P P9 SRL . . . E 3 99.159 17.701 14.949 1 87.55 ? P9 SRL 501 A 1 HETATM 10 P P10 SRL . . . E 3 100.747 16.927 17.413 1 100.08 ? P10 SRL 501 A 1 HETATM 11 O O11 SRL . . . E 3 105.095 17.979 10.817 1 83.44 ? O11 SRL 501 A 1 HETATM 12 C C12 SRL . . . E 3 106.069 17.254 13.52 1 84.93 ? C12 SRL 501 A 1 HETATM 13 C C13 SRL . . . E 3 102.362 19.02 10.396 1 71.99 ? C13 SRL 501 A 1 HETATM 14 C C14 SRL . . . E 3 106.322 17.266 15.001 1 80.98 ? C14 SRL 501 A 1 HETATM 15 C C15 SRL . . . E 3 106.115 15.838 13.065 1 64.5 ? C15 SRL 501 A 1 HETATM 16 C C16 SRL . . . E 3 107.233 17.949 12.899 1 62.19 ? C16 SRL 501 A 1 HETATM 17 C C17 SRL . . . E 3 101.059 19.712 10.548 1 60 ? C17 SRL 501 A 1 HETATM 18 C C18 SRL . . . E 3 103.161 20.024 9.628 1 66.63 ? C18 SRL 501 A 1 HETATM 19 C C19 SRL . . . E 3 102.072 17.761 9.646 1 57.07 ? C19 SRL 501 A 1 HETATM 20 O O20 SRL . . . E 3 98.833 19.158 14.89 1 80.37 ? O20 SRL 501 A 1 HETATM 21 O O21 SRL . . . E 3 99.049 17.08 13.525 1 90.19 ? O21 SRL 501 A 1 HETATM 22 C C22 SRL . . . E 3 98.302 17.785 12.613 1 82.22 ? C22 SRL 501 A 1 HETATM 23 C C23 SRL . . . E 3 98.534 17.67 11.144 1 68.32 ? C23 SRL 501 A 1 HETATM 24 O O24 SRL . . . E 3 98.245 16.958 15.987 1 114.99 ? O24 SRL 501 A 1 HETATM 25 C C25 SRL . . . E 3 96.923 16.653 15.772 1 79.01 ? C25 SRL 501 A 1 HETATM 26 C C26 SRL . . . E 3 96.638 15.242 15.404 1 67.56 ? C26 SRL 501 A 1 HETATM 27 O O27 SRL . . . E 3 100.492 15.454 17.366 1 59.05 ? O27 SRL 501 A 1 HETATM 28 O O28 SRL . . . E 3 102.062 17.18 18.205 1 83.12 ? O28 SRL 501 A 1 HETATM 29 C C29 SRL . . . E 3 103.33 16.876 17.787 1 88.72 ? C29 SRL 501 A 1 HETATM 30 C C30 SRL . . . E 3 104.212 18.081 17.778 1 95.44 ? C30 SRL 501 A 1 HETATM 31 O O31 SRL . . . E 3 99.534 17.536 18.217 1 92.6 ? O31 SRL 501 A 1 HETATM 32 C C32 SRL . . . E 3 99.338 18.896 18.349 1 73.57 ? C32 SRL 501 A 1 HETATM 33 C C33 SRL . . . E 3 97.956 19.444 18.192 1 58.33 ? C33 SRL 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #