data_4J60
#
_model_server_result.job_id            NhAEuNwfLJcxlyP1FbxP-Q 
_model_server_result.datetime_utc      '2024-11-02 10:20:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j60 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":206}' 
#
_entry.id    4J60 
#
_exptl.entry_id    4J60 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              86.132 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            cyclopentanol 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4J60 
_cell.length_a            63.506 
_cell.length_b            63.506 
_cell.length_c            63.877 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J60 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_645 y+1,x-1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 95.259 -54.997809 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
#
_chem_comp.formula           'C5 H10 O' 
_chem_comp.formula_weight    86.132 
_chem_comp.id                YEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              cyclopentanol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C02 C01 YEG sing 352 n n 
C05 C01 YEG sing 353 n n 
C01 H01 YEG sing 354 n n 
C01 H01A YEG sing 355 n n 
C03 C02 YEG sing 356 n n 
C02 H02 YEG sing 357 n n 
C02 H02A YEG sing 358 n n 
C04 C03 YEG sing 359 n n 
C03 H03 YEG sing 360 n n 
C03 H03A YEG sing 361 n n 
C04 O06 YEG sing 362 n n 
C04 C05 YEG sing 363 n n 
C04 H04 YEG sing 364 n n 
C05 H05 YEG sing 365 n n 
C05 H05A YEG sing 366 n n 
O06 HO06 YEG sing 367 n n 
#
_atom_sites.entry_id                     4J60 
_atom_sites.fract_transf_matrix[1][1]    0.015747 
_atom_sites.fract_transf_matrix[1][2]    0.009091 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018183 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015655 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 201 201 SO4 SO4 . 
C 3 YEG A 1 203 203 YEG YEG . 
D 3 YEG A 1 204 204 YEG YEG . 
E 3 YEG A 1 206 206 YEG YEG . 
F 4 HOH A 1 301 301 HOH HOH . 
F 4 HOH A 2 302 302 HOH HOH . 
F 4 HOH A 3 303 303 HOH HOH . 
F 4 HOH A 4 304 304 HOH HOH . 
F 4 HOH A 5 305 305 HOH HOH . 
F 4 HOH A 6 306 306 HOH HOH . 
F 4 HOH A 7 307 307 HOH HOH . 
F 4 HOH A 8 308 308 HOH HOH . 
F 4 HOH A 9 309 309 HOH HOH . 
F 4 HOH A 10 310 310 HOH HOH . 
F 4 HOH A 11 311 311 HOH HOH . 
F 4 HOH A 12 312 312 HOH HOH . 
F 4 HOH A 13 313 313 HOH HOH . 
F 4 HOH A 14 314 314 HOH HOH . 
F 4 HOH A 15 315 315 HOH HOH . 
F 4 HOH A 16 316 316 HOH HOH . 
F 4 HOH A 17 317 317 HOH HOH . 
F 4 HOH A 18 318 318 HOH HOH . 
F 4 HOH A 19 319 319 HOH HOH . 
F 4 HOH A 20 320 320 HOH HOH . 
F 4 HOH A 21 321 321 HOH HOH . 
F 4 HOH A 22 322 322 HOH HOH . 
F 4 HOH A 23 323 323 HOH HOH . 
F 4 HOH A 24 324 324 HOH HOH . 
F 4 HOH A 25 325 325 HOH HOH . 
F 4 HOH A 26 326 326 HOH HOH . 
F 4 HOH A 27 327 327 HOH HOH . 
F 4 HOH A 28 328 328 HOH HOH . 
F 4 HOH A 29 329 329 HOH HOH . 
F 4 HOH A 30 330 330 HOH HOH . 
F 4 HOH A 31 331 331 HOH HOH . 
F 4 HOH A 32 332 332 HOH HOH . 
F 4 HOH A 33 333 333 HOH HOH . 
F 4 HOH A 34 334 334 HOH HOH . 
F 4 HOH A 35 335 335 HOH HOH . 
F 4 HOH A 36 336 336 HOH HOH . 
F 4 HOH A 37 337 337 HOH HOH . 
F 4 HOH A 38 338 338 HOH HOH . 
F 4 HOH A 39 339 339 HOH HOH . 
F 4 HOH A 40 340 340 HOH HOH . 
F 4 HOH A 41 341 341 HOH HOH . 
F 4 HOH A 42 342 342 HOH HOH . 
F 4 HOH A 43 343 343 HOH HOH . 
F 4 HOH A 44 344 344 HOH HOH . 
F 4 HOH A 45 345 345 HOH HOH . 
F 4 HOH A 46 346 346 HOH HOH . 
F 4 HOH A 47 347 347 HOH HOH . 
F 4 HOH A 48 348 348 HOH HOH . 
F 4 HOH A 49 349 349 HOH HOH . 
F 4 HOH A 50 350 350 HOH HOH . 
F 4 HOH A 51 351 351 HOH HOH . 
F 4 HOH A 52 352 352 HOH HOH . 
F 4 HOH A 53 353 353 HOH HOH . 
F 4 HOH A 54 354 354 HOH HOH . 
F 4 HOH A 55 355 355 HOH HOH . 
F 4 HOH A 56 356 356 HOH HOH . 
F 4 HOH A 57 357 357 HOH HOH . 
F 4 HOH A 58 358 358 HOH HOH . 
F 4 HOH A 59 359 359 HOH HOH . 
F 4 HOH A 60 360 360 HOH HOH . 
F 4 HOH A 61 361 361 HOH HOH . 
F 4 HOH A 62 362 362 HOH HOH . 
F 4 HOH A 63 363 363 HOH HOH . 
F 4 HOH A 64 364 364 HOH HOH . 
F 4 HOH A 65 365 365 HOH HOH . 
F 4 HOH A 66 366 366 HOH HOH . 
F 4 HOH A 67 367 367 HOH HOH . 
F 4 HOH A 68 368 368 HOH HOH . 
F 4 HOH A 69 369 369 HOH HOH . 
F 4 HOH A 70 370 370 HOH HOH . 
F 4 HOH A 71 372 372 HOH HOH . 
F 4 HOH A 72 373 373 HOH HOH . 
F 4 HOH A 73 375 375 HOH HOH . 
F 4 HOH A 74 380 380 HOH HOH . 
F 4 HOH A 75 386 386 HOH HOH . 
F 4 HOH A 76 388 388 HOH HOH . 
F 4 HOH A 77 389 389 HOH HOH . 
F 4 HOH A 78 391 391 HOH HOH . 
F 4 HOH A 79 393 393 HOH HOH . 
F 4 HOH A 80 396 396 HOH HOH . 
F 4 HOH A 81 398 398 HOH HOH . 
F 4 HOH A 82 401 401 HOH HOH . 
F 4 HOH A 83 402 402 HOH HOH . 
F 4 HOH A 84 403 403 HOH HOH . 
F 4 HOH A 85 404 404 HOH HOH . 
F 4 HOH A 86 405 405 HOH HOH . 
F 4 HOH A 87 412 412 HOH HOH . 
F 4 HOH A 88 413 413 HOH HOH . 
F 4 HOH A 89 414 414 HOH HOH . 
F 4 HOH A 90 415 415 HOH HOH . 
F 4 HOH A 91 416 416 HOH HOH . 
F 4 HOH A 92 417 417 HOH HOH . 
F 4 HOH A 93 418 418 HOH HOH . 
F 4 HOH A 94 419 419 HOH HOH . 
F 4 HOH A 95 421 421 HOH HOH . 
F 4 HOH A 96 428 428 HOH HOH . 
F 4 HOH A 97 434 434 HOH HOH . 
F 4 HOH A 98 435 435 HOH HOH . 
F 4 HOH A 99 436 436 HOH HOH . 
F 4 HOH A 100 451 451 HOH HOH . 
F 4 HOH A 101 452 452 HOH HOH . 
F 4 HOH A 102 453 453 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 YEG . . . E 3 26.758 -14.303 1.96 1 38.86 ? C01 YEG 206 A 1 
HETATM 2 C C02 YEG . . . E 3 28.264 -14.221 2.192 1 35.44 ? C02 YEG 206 A 1 
HETATM 3 C C03 YEG . . . E 3 28.623 -15.424 3.017 1 30.69 ? C03 YEG 206 A 1 
HETATM 4 C C04 YEG . . . E 3 27.353 -16.137 3.232 1 35.01 ? C04 YEG 206 A 1 
HETATM 5 C C05 YEG . . . E 3 26.281 -15.548 2.66 1 37.48 ? C05 YEG 206 A 1 
HETATM 6 O O06 YEG . . . E 3 27.055 -17.306 3.912 1 39.21 ? O06 YEG 206 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#