data_4J61 # _model_server_result.job_id WimgIQSmS-wg8kAVp4lOPQ _model_server_result.datetime_utc '2024-10-12 10:20:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j61 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 4J61 # _exptl.entry_id 4J61 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 84.116 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description cyclopentanone _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4J61 _cell.length_a 63.462 _cell.length_b 63.462 _cell.length_c 63.927 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J61 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 21.309 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C5 H8 O' _chem_comp.formula_weight 84.116 _chem_comp.id MFW _chem_comp.mon_nstd_flag . _chem_comp.name cyclopentanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C1 MFW sing 237 n n C5 C4 MFW sing 238 n n O1 C4 MFW doub 239 n n C1 C2 MFW sing 240 n n C4 C3 MFW sing 241 n n C3 C2 MFW sing 242 n n C1 H1 MFW sing 243 n n C1 H2 MFW sing 244 n n C2 H4 MFW sing 245 n n C2 H5 MFW sing 246 n n C3 H6 MFW sing 247 n n C3 H7 MFW sing 248 n n C5 H9 MFW sing 249 n n C5 H10 MFW sing 250 n n # _atom_sites.entry_id 4J61 _atom_sites.fract_transf_matrix[1][1] 0.015757 _atom_sites.fract_transf_matrix[1][2] 0.009098 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018195 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 201 SO4 SO4 . C 3 MFW A 1 202 202 MFW MFW . D 3 MFW A 1 203 203 MFW MFW . E 3 MFW A 1 204 204 MFW MFW . F 3 MFW A 1 205 205 MFW MFW . G 4 HOH A 1 301 301 HOH HOH . G 4 HOH A 2 302 302 HOH HOH . G 4 HOH A 3 303 303 HOH HOH . G 4 HOH A 4 304 304 HOH HOH . G 4 HOH A 5 305 305 HOH HOH . G 4 HOH A 6 306 306 HOH HOH . G 4 HOH A 7 307 307 HOH HOH . G 4 HOH A 8 308 308 HOH HOH . G 4 HOH A 9 309 309 HOH HOH . G 4 HOH A 10 310 310 HOH HOH . G 4 HOH A 11 311 311 HOH HOH . G 4 HOH A 12 312 312 HOH HOH . G 4 HOH A 13 313 313 HOH HOH . G 4 HOH A 14 314 314 HOH HOH . G 4 HOH A 15 315 315 HOH HOH . G 4 HOH A 16 316 316 HOH HOH . G 4 HOH A 17 317 317 HOH HOH . G 4 HOH A 18 318 318 HOH HOH . G 4 HOH A 19 319 319 HOH HOH . G 4 HOH A 20 320 320 HOH HOH . G 4 HOH A 21 321 321 HOH HOH . G 4 HOH A 22 322 322 HOH HOH . G 4 HOH A 23 323 323 HOH HOH . G 4 HOH A 24 324 324 HOH HOH . G 4 HOH A 25 325 325 HOH HOH . G 4 HOH A 26 326 326 HOH HOH . G 4 HOH A 27 327 327 HOH HOH . G 4 HOH A 28 328 328 HOH HOH . G 4 HOH A 29 329 329 HOH HOH . G 4 HOH A 30 330 330 HOH HOH . G 4 HOH A 31 331 331 HOH HOH . G 4 HOH A 32 332 332 HOH HOH . G 4 HOH A 33 333 333 HOH HOH . G 4 HOH A 34 334 334 HOH HOH . G 4 HOH A 35 335 335 HOH HOH . G 4 HOH A 36 336 336 HOH HOH . G 4 HOH A 37 337 337 HOH HOH . G 4 HOH A 38 338 338 HOH HOH . G 4 HOH A 39 339 339 HOH HOH . G 4 HOH A 40 340 340 HOH HOH . G 4 HOH A 41 341 341 HOH HOH . G 4 HOH A 42 342 342 HOH HOH . G 4 HOH A 43 343 343 HOH HOH . G 4 HOH A 44 344 344 HOH HOH . G 4 HOH A 45 345 345 HOH HOH . G 4 HOH A 46 346 346 HOH HOH . G 4 HOH A 47 347 347 HOH HOH . G 4 HOH A 48 348 348 HOH HOH . G 4 HOH A 49 349 349 HOH HOH . G 4 HOH A 50 350 350 HOH HOH . G 4 HOH A 51 351 351 HOH HOH . G 4 HOH A 52 352 352 HOH HOH . G 4 HOH A 53 353 353 HOH HOH . G 4 HOH A 54 354 354 HOH HOH . G 4 HOH A 55 355 355 HOH HOH . G 4 HOH A 56 356 356 HOH HOH . G 4 HOH A 57 357 357 HOH HOH . G 4 HOH A 58 358 358 HOH HOH . G 4 HOH A 59 359 359 HOH HOH . G 4 HOH A 60 360 360 HOH HOH . G 4 HOH A 61 361 361 HOH HOH . G 4 HOH A 62 362 362 HOH HOH . G 4 HOH A 63 363 363 HOH HOH . G 4 HOH A 64 364 364 HOH HOH . G 4 HOH A 65 365 365 HOH HOH . G 4 HOH A 66 366 366 HOH HOH . G 4 HOH A 67 367 367 HOH HOH . G 4 HOH A 68 368 368 HOH HOH . G 4 HOH A 69 369 369 HOH HOH . G 4 HOH A 70 370 370 HOH HOH . G 4 HOH A 71 371 371 HOH HOH . G 4 HOH A 72 376 376 HOH HOH . G 4 HOH A 73 377 377 HOH HOH . G 4 HOH A 74 378 378 HOH HOH . G 4 HOH A 75 379 379 HOH HOH . G 4 HOH A 76 380 380 HOH HOH . G 4 HOH A 77 382 382 HOH HOH . G 4 HOH A 78 384 384 HOH HOH . G 4 HOH A 79 385 385 HOH HOH . G 4 HOH A 80 386 386 HOH HOH . G 4 HOH A 81 387 387 HOH HOH . G 4 HOH A 82 389 389 HOH HOH . G 4 HOH A 83 392 392 HOH HOH . G 4 HOH A 84 393 393 HOH HOH . G 4 HOH A 85 394 394 HOH HOH . G 4 HOH A 86 397 397 HOH HOH . G 4 HOH A 87 400 400 HOH HOH . G 4 HOH A 88 401 401 HOH HOH . G 4 HOH A 89 402 402 HOH HOH . G 4 HOH A 90 405 405 HOH HOH . G 4 HOH A 91 406 406 HOH HOH . G 4 HOH A 92 407 407 HOH HOH . G 4 HOH A 93 408 408 HOH HOH . G 4 HOH A 94 410 410 HOH HOH . G 4 HOH A 95 413 413 HOH HOH . G 4 HOH A 96 414 414 HOH HOH . G 4 HOH A 97 419 419 HOH HOH . G 4 HOH A 98 421 421 HOH HOH . G 4 HOH A 99 426 426 HOH HOH . G 4 HOH A 100 428 428 HOH HOH . G 4 HOH A 101 437 437 HOH HOH . G 4 HOH A 102 465 465 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MFW . . . F 3 -40.005 2.255 -5.228 1 39.96 ? C1 MFW 205 A 1 HETATM 2 O O1 MFW . . . F 3 -37.476 1.912 -2.906 1 37.63 ? O1 MFW 205 A 1 HETATM 3 C C2 MFW . . . F 3 -40.528 2.723 -3.897 1 39.41 ? C2 MFW 205 A 1 HETATM 4 C C3 MFW . . . F 3 -39.817 1.89 -2.862 1 40.44 ? C3 MFW 205 A 1 HETATM 5 C C4 MFW . . . F 3 -38.587 1.351 -3.511 1 37.75 ? C4 MFW 205 A 1 HETATM 6 C C5 MFW . . . F 3 -38.592 1.7 -4.928 1 37.34 ? C5 MFW 205 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #