data_4J69 # _model_server_result.job_id hdLWWTofTFzrSQTnMk4piw _model_server_result.datetime_utc '2024-11-02 10:32:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j69 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":215}' # _entry.id 4J69 # _exptl.entry_id 4J69 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 130.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,3aR,6aS)-hexahydrofuro[2,3-b]furan-3-ol _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4J69 _cell.length_a 64.07 _cell.length_b 64.07 _cell.length_c 64.073 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J69 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C6 H10 O3' _chem_comp.formula_weight 130.142 _chem_comp.id RSG _chem_comp.mon_nstd_flag . _chem_comp.name (3S,3aR,6aS)-hexahydrofuro[2,3-b]furan-3-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C1 RSG sing 277 n n C1 O3 RSG sing 278 n n C1 C2 RSG sing 279 n n C1 H1 RSG sing 280 n n C4 O1 RSG sing 281 n n O1 C3 RSG sing 282 n n C2 C3 RSG sing 283 n n C2 C6 RSG sing 284 n n C2 H2 RSG sing 285 n n C3 O2 RSG sing 286 n n O2 C5 RSG sing 287 n n C3 H3 RSG sing 288 n n O3 HO3 RSG sing 289 n n C4 H4 RSG sing 290 n n C4 H4A RSG sing 291 n n C6 C5 RSG sing 292 n n C5 H5 RSG sing 293 n n C5 H5A RSG sing 294 n n C6 H6 RSG sing 295 n n C6 H6A RSG sing 296 n n # _atom_sites.entry_id 4J69 _atom_sites.fract_transf_matrix[1][1] 0.015608 _atom_sites.fract_transf_matrix[1][2] 0.009011 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015607 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 201 SO4 SO4 . C 2 SO4 A 1 202 202 SO4 SO4 . D 3 RSG A 1 204 204 RSG RSG . E 3 RSG A 1 205 205 RSG RSG . F 3 RSG A 1 206 206 RSG RSG . G 3 RSG A 1 212 212 RSG RSG . H 3 RSG A 1 213 213 RSG RSG . I 3 RSG A 1 214 214 RSG RSG . J 3 RSG A 1 215 215 RSG RSG . K 3 RSG A 1 211 211 RSG RSG . L 3 RSG A 1 216 216 RSG RSG . M 4 HOH A 1 301 301 HOH HOH . M 4 HOH A 2 302 302 HOH HOH . M 4 HOH A 3 303 303 HOH HOH . M 4 HOH A 4 304 304 HOH HOH . M 4 HOH A 5 305 305 HOH HOH . M 4 HOH A 6 306 306 HOH HOH . M 4 HOH A 7 307 307 HOH HOH . M 4 HOH A 8 308 308 HOH HOH . M 4 HOH A 9 309 309 HOH HOH . M 4 HOH A 10 310 310 HOH HOH . M 4 HOH A 11 311 311 HOH HOH . M 4 HOH A 12 312 312 HOH HOH . M 4 HOH A 13 313 313 HOH HOH . M 4 HOH A 14 314 314 HOH HOH . M 4 HOH A 15 315 315 HOH HOH . M 4 HOH A 16 316 316 HOH HOH . M 4 HOH A 17 317 317 HOH HOH . M 4 HOH A 18 318 318 HOH HOH . M 4 HOH A 19 319 319 HOH HOH . M 4 HOH A 20 320 320 HOH HOH . M 4 HOH A 21 321 321 HOH HOH . M 4 HOH A 22 322 322 HOH HOH . M 4 HOH A 23 323 323 HOH HOH . M 4 HOH A 24 324 324 HOH HOH . M 4 HOH A 25 325 325 HOH HOH . M 4 HOH A 26 326 326 HOH HOH . M 4 HOH A 27 327 327 HOH HOH . M 4 HOH A 28 328 328 HOH HOH . M 4 HOH A 29 329 329 HOH HOH . M 4 HOH A 30 330 330 HOH HOH . M 4 HOH A 31 331 331 HOH HOH . M 4 HOH A 32 332 332 HOH HOH . M 4 HOH A 33 333 333 HOH HOH . M 4 HOH A 34 334 334 HOH HOH . M 4 HOH A 35 335 335 HOH HOH . M 4 HOH A 36 336 336 HOH HOH . M 4 HOH A 37 337 337 HOH HOH . M 4 HOH A 38 338 338 HOH HOH . M 4 HOH A 39 339 339 HOH HOH . M 4 HOH A 40 341 341 HOH HOH . M 4 HOH A 41 342 342 HOH HOH . M 4 HOH A 42 343 343 HOH HOH . M 4 HOH A 43 344 344 HOH HOH . M 4 HOH A 44 345 345 HOH HOH . M 4 HOH A 45 346 346 HOH HOH . M 4 HOH A 46 347 347 HOH HOH . M 4 HOH A 47 348 348 HOH HOH . M 4 HOH A 48 349 349 HOH HOH . M 4 HOH A 49 350 350 HOH HOH . M 4 HOH A 50 351 351 HOH HOH . M 4 HOH A 51 352 352 HOH HOH . M 4 HOH A 52 353 353 HOH HOH . M 4 HOH A 53 357 357 HOH HOH . M 4 HOH A 54 358 358 HOH HOH . M 4 HOH A 55 361 361 HOH HOH . M 4 HOH A 56 363 363 HOH HOH . M 4 HOH A 57 364 364 HOH HOH . M 4 HOH A 58 366 366 HOH HOH . M 4 HOH A 59 367 367 HOH HOH . M 4 HOH A 60 370 370 HOH HOH . M 4 HOH A 61 371 371 HOH HOH . M 4 HOH A 62 375 375 HOH HOH . M 4 HOH A 63 377 377 HOH HOH . M 4 HOH A 64 379 379 HOH HOH . M 4 HOH A 65 381 381 HOH HOH . M 4 HOH A 66 385 385 HOH HOH . M 4 HOH A 67 391 391 HOH HOH . M 4 HOH A 68 392 392 HOH HOH . M 4 HOH A 69 393 393 HOH HOH . M 4 HOH A 70 394 394 HOH HOH . M 4 HOH A 71 405 405 HOH HOH . M 4 HOH A 72 407 407 HOH HOH . M 4 HOH A 73 409 409 HOH HOH . M 4 HOH A 74 411 411 HOH HOH . M 4 HOH A 75 415 415 HOH HOH . M 4 HOH A 76 416 416 HOH HOH . M 4 HOH A 77 429 429 HOH HOH . M 4 HOH A 78 431 431 HOH HOH . M 4 HOH A 79 438 438 HOH HOH . M 4 HOH A 80 466 466 HOH HOH . M 4 HOH A 81 467 467 HOH HOH . M 4 HOH A 82 468 468 HOH HOH . M 4 HOH A 83 469 469 HOH HOH . M 4 HOH A 84 470 470 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RSG . . . J 3 -27.572 -33.635 -14.228 1 63.78 ? C1 RSG 215 A 1 HETATM 2 O O1 RSG . . . J 3 -29.743 -33.349 -13.314 1 66.3 ? O1 RSG 215 A 1 HETATM 3 C C2 RSG . . . J 3 -27.881 -32.209 -14.069 1 58.02 ? C2 RSG 215 A 1 HETATM 4 O O2 RSG . . . J 3 -29.765 -31.012 -13.585 1 58.16 ? O2 RSG 215 A 1 HETATM 5 C C3 RSG . . . J 3 -28.989 -32.106 -13.203 1 58.74 ? C3 RSG 215 A 1 HETATM 6 O O3 RSG . . . J 3 -27.262 -33.934 -15.553 1 66.08 ? O3 RSG 215 A 1 HETATM 7 C C4 RSG . . . J 3 -28.756 -34.427 -13.777 1 64.25 ? C4 RSG 215 A 1 HETATM 8 C C5 RSG . . . J 3 -29.161 -30.394 -14.798 1 50.25 ? C5 RSG 215 A 1 HETATM 9 C C6 RSG . . . J 3 -28.282 -31.523 -15.355 1 54.39 ? C6 RSG 215 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #