data_4J6G # _model_server_result.job_id FrdYVbUnuWqvdZ11dkAQ0Q _model_server_result.datetime_utc '2024-10-12 23:24:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j6g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":302}' # _entry.id 4J6G # _exptl.entry_id 4J6G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J6G _cell.length_a 149.058 _cell.length_b 149.058 _cell.length_c 149.058 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J6G _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dodecameric 12 software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,H,K,M 1 1,2,3 B,D,G,I,J,L,N 1 4,5,6 A,C,E,F,H,K,M 2 1,2,3 B,D,G,I,J,L,N 3 1,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 4_545 x+1/2,-y-1/2,-z 1 0 0 0 -1 0 0 0 -1 74.529 -74.529 0 5 'crystal symmetry operation' 8_554 -z,x+1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 0 74.529 -74.529 6 'crystal symmetry operation' 12_455 -y-1/2,-z,x+1/2 0 -1 0 0 0 -1 1 0 0 -74.529 0 74.529 7 'crystal symmetry operation' 7_445 -z-1/2,-x-1,y+1/2 0 0 -1 -1 0 0 0 1 0 -74.529 -149.058 74.529 8 'crystal symmetry operation' 10_444 -y-1,z-1/2,-x-1/2 0 -1 0 0 0 1 -1 0 0 -149.058 -74.529 -74.529 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 J N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG E 301 NAG 3 n E NAG 2 E 2 NAG E 302 NAG 3 n E BMA 3 E 3 BMA E 303 BMA 3 n E MAN 4 E 4 MAN E 304 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 79 A CYS 154 1_555 A SG CYS 112 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 B SG CYS 79 B CYS 154 1_555 B SG CYS 112 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf3 C SG CYS 20 C CYS 49 1_555 C SG CYS 33 C CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 C SG CYS 23 C CYS 52 1_555 C SG CYS 41 C CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? disulf ? disulf5 C SG CYS 44 C CYS 73 1_555 C SG CYS 59 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? disulf ? disulf6 C SG CYS 62 C CYS 91 1_555 C SG CYS 76 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? disulf ? disulf7 C SG CYS 66 C CYS 95 1_555 C SG CYS 84 C CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf8 C SG CYS 86 C CYS 115 1_555 C SG CYS 97 C CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? disulf ? disulf9 C SG CYS 103 C CYS 132 1_555 C SG CYS 121 C CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf10 C SG CYS 124 C CYS 153 1_555 C SG CYS 139 C CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf11 C SG CYS 145 C CYS 174 1_555 C SG CYS 164 C CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf12 D SG CYS 20 D CYS 49 1_555 D SG CYS 33 D CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf13 D SG CYS 23 D CYS 52 1_555 D SG CYS 41 D CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf14 D SG CYS 44 D CYS 73 1_555 D SG CYS 59 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf15 D SG CYS 62 D CYS 91 1_555 D SG CYS 76 D CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? disulf ? disulf16 D SG CYS 66 D CYS 95 1_555 D SG CYS 84 D CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf17 D SG CYS 86 D CYS 115 1_555 D SG CYS 97 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf18 D SG CYS 103 D CYS 132 1_555 D SG CYS 121 D CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf19 D SG CYS 124 D CYS 153 1_555 D SG CYS 139 D CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf20 D SG CYS 145 D CYS 174 1_555 D SG CYS 164 D CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? covale ? covale1 C ND2 ASN 144 C ASN 173 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 D ND2 ASN 144 D ASN 173 1_555 I C1 NAG . D NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.505 ? covale ? covale3 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale5 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 C O CYS 103 C CYS 132 1_555 H MG MG . C MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc2 C O PRO 104 C PRO 133 1_555 H MG MG . C MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc3 C O ALA 107 C ALA 136 1_555 H MG MG . C MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc4 C OG SER 130 C SER 159 1_555 H MG MG . C MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc5 C O SER 132 C SER 161 1_555 H MG MG . C MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc6 H MG MG . C MG 305 1_555 M O HOH . C HOH 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc7 D O CYS 103 D CYS 132 1_555 J MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc8 D O PRO 104 D PRO 133 1_555 J MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc9 D O ALA 107 D ALA 136 1_555 J MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc10 D OG SER 130 D SER 159 1_555 J MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc11 D O SER 132 D SER 161 1_555 J MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc12 J MG MG . D MG 302 1_555 N O HOH . D HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4J6G _atom_sites.fract_transf_matrix[1][1] 0.006709 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 CL A 1 301 301 CL CL . G 4 CL B 1 301 301 CL CL . H 5 MG C 1 305 605 MG MG . I 6 NAG D 1 301 201 NAG NAG . J 5 MG D 1 302 202 MG MG . K 7 HOH A 1 401 401 HOH HOH . K 7 HOH A 2 402 402 HOH HOH . K 7 HOH A 3 403 403 HOH HOH . K 7 HOH A 4 404 404 HOH HOH . K 7 HOH A 5 405 405 HOH HOH . K 7 HOH A 6 406 406 HOH HOH . K 7 HOH A 7 407 407 HOH HOH . K 7 HOH A 8 408 408 HOH HOH . K 7 HOH A 9 409 409 HOH HOH . K 7 HOH A 10 410 410 HOH HOH . K 7 HOH A 11 411 411 HOH HOH . K 7 HOH A 12 412 412 HOH HOH . K 7 HOH A 13 413 413 HOH HOH . K 7 HOH A 14 414 414 HOH HOH . K 7 HOH A 15 415 415 HOH HOH . K 7 HOH A 16 416 416 HOH HOH . K 7 HOH A 17 417 417 HOH HOH . K 7 HOH A 18 418 418 HOH HOH . L 7 HOH B 1 401 401 HOH HOH . L 7 HOH B 2 402 402 HOH HOH . L 7 HOH B 3 403 403 HOH HOH . L 7 HOH B 4 404 404 HOH HOH . L 7 HOH B 5 405 405 HOH HOH . L 7 HOH B 6 406 406 HOH HOH . L 7 HOH B 7 407 407 HOH HOH . L 7 HOH B 8 408 408 HOH HOH . L 7 HOH B 9 409 409 HOH HOH . L 7 HOH B 10 410 410 HOH HOH . L 7 HOH B 11 411 411 HOH HOH . L 7 HOH B 12 412 412 HOH HOH . L 7 HOH B 13 413 413 HOH HOH . L 7 HOH B 14 414 414 HOH HOH . L 7 HOH B 15 415 415 HOH HOH . M 7 HOH C 1 701 701 HOH HOH . M 7 HOH C 2 702 702 HOH HOH . M 7 HOH C 3 703 703 HOH HOH . M 7 HOH C 4 704 704 HOH HOH . M 7 HOH C 5 705 705 HOH HOH . M 7 HOH C 6 706 706 HOH HOH . M 7 HOH C 7 707 707 HOH HOH . N 7 HOH D 1 401 301 HOH HOH . N 7 HOH D 2 402 302 HOH HOH . N 7 HOH D 3 403 303 HOH HOH . N 7 HOH D 4 404 304 HOH HOH . N 7 HOH D 5 405 305 HOH HOH . N 7 HOH D 6 406 306 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 5 _atom_site.Cartn_x -73.238 _atom_site.Cartn_y -53.983 _atom_site.Cartn_z 34.567 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #