data_4J6Y
#
_model_server_result.job_id            KtZEY9RRP1o_VBL3zc9uxA 
_model_server_result.datetime_utc      '2024-10-18 17:17:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j6y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":102}' 
#
_entry.id    4J6Y 
#
_exptl.entry_id    4J6Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4J6Y 
_cell.length_a            61.562 
_cell.length_b            72.863 
_cell.length_c            107.275 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J6Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 H CD CD . A CD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc2 A ND1 HIS 57 A HIS 57 1_555 G CD CD . A CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc3 G CD CD . A CD 101 1_555 T O HOH . B HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc4 S O HOH . A HOH 211 1_555 Q CD CD . F CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
metalc ? metalc5 B OD2 ASP 9 B ASP 9 1_555 J CD CD . B CD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc6 B ND1 HIS 57 B HIS 57 1_555 I CD CD . B CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc7 I CD CD . B CD 101 1_555 U O HOH . C HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? 
metalc ? metalc8 C OD2 ASP 9 C ASP 9 1_555 L CD CD . C CD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? 
metalc ? metalc9 C OD1 ASP 9 C ASP 9 1_555 L CD CD . C CD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
metalc ? metalc10 C ND1 HIS 57 C HIS 57 1_555 K CD CD . C CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
metalc ? metalc11 K CD CD . C CD 101 1_555 U O HOH . C HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? 
metalc ? metalc12 K CD CD . C CD 101 1_555 V O HOH . D HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc13 K CD CD . C CD 101 1_555 V O HOH . D HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
metalc ? metalc14 L CD CD . C CD 102 1_555 U O HOH . C HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? 
metalc ? metalc15 D OD1 ASP 9 D ASP 9 1_555 N CD CD . D CD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc16 D ND1 HIS 57 D HIS 57 1_555 M CD CD . D CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc17 M CD CD . D CD 101 1_555 W O HOH . E HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc18 E OD2 ASP 9 E ASP 9 1_555 P CD CD . E CD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc19 E ND1 HIS 57 E HIS 57 1_555 O CD CD . E CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc20 O CD CD . E CD 101 1_555 X O HOH . F HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc21 O CD CD . E CD 101 1_555 X O HOH . F HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc22 F OD2 ASP 9 F ASP 9 1_555 R CD CD . F CD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc23 F ND1 HIS 57 F HIS 57 1_555 Q CD CD . F CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4J6Y 
_atom_sites.fract_transf_matrix[1][1]    0.016244 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013724 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009322 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 CD A 1 101 1 CD CD . 
H 2 CD A 1 102 11 CD CD . 
I 2 CD B 1 101 2 CD CD . 
J 2 CD B 1 102 7 CD CD . 
K 2 CD C 1 101 6 CD CD . 
L 2 CD C 1 102 8 CD CD . 
M 2 CD D 1 101 5 CD CD . 
N 2 CD D 1 102 12 CD CD . 
O 2 CD E 1 101 4 CD CD . 
P 2 CD E 1 102 9 CD CD . 
Q 2 CD F 1 101 3 CD CD . 
R 2 CD F 1 102 10 CD CD . 
S 3 HOH A 1 201 12 HOH HOH . 
S 3 HOH A 2 202 19 HOH HOH . 
S 3 HOH A 3 203 22 HOH HOH . 
S 3 HOH A 4 204 32 HOH HOH . 
S 3 HOH A 5 205 34 HOH HOH . 
S 3 HOH A 6 206 43 HOH HOH . 
S 3 HOH A 7 207 44 HOH HOH . 
S 3 HOH A 8 208 47 HOH HOH . 
S 3 HOH A 9 209 48 HOH HOH . 
S 3 HOH A 10 210 54 HOH HOH . 
S 3 HOH A 11 211 58 HOH HOH . 
S 3 HOH A 12 212 64 HOH HOH . 
S 3 HOH A 13 213 82 HOH HOH . 
S 3 HOH A 14 214 84 HOH HOH . 
S 3 HOH A 15 215 103 HOH HOH . 
S 3 HOH A 16 216 104 HOH HOH . 
S 3 HOH A 17 217 107 HOH HOH . 
S 3 HOH A 18 218 108 HOH HOH . 
S 3 HOH A 19 219 110 HOH HOH . 
S 3 HOH A 20 220 111 HOH HOH . 
S 3 HOH A 21 221 118 HOH HOH . 
T 3 HOH B 1 201 7 HOH HOH . 
T 3 HOH B 2 202 8 HOH HOH . 
T 3 HOH B 3 203 27 HOH HOH . 
T 3 HOH B 4 204 39 HOH HOH . 
T 3 HOH B 5 205 41 HOH HOH . 
T 3 HOH B 6 206 51 HOH HOH . 
T 3 HOH B 7 207 52 HOH HOH . 
T 3 HOH B 8 208 55 HOH HOH . 
T 3 HOH B 9 209 63 HOH HOH . 
T 3 HOH B 10 210 67 HOH HOH . 
T 3 HOH B 11 211 73 HOH HOH . 
T 3 HOH B 12 212 74 HOH HOH . 
T 3 HOH B 13 213 75 HOH HOH . 
T 3 HOH B 14 214 83 HOH HOH . 
T 3 HOH B 15 215 87 HOH HOH . 
T 3 HOH B 16 216 88 HOH HOH . 
T 3 HOH B 17 217 92 HOH HOH . 
T 3 HOH B 18 218 94 HOH HOH . 
T 3 HOH B 19 219 101 HOH HOH . 
T 3 HOH B 20 220 109 HOH HOH . 
T 3 HOH B 21 221 117 HOH HOH . 
T 3 HOH B 22 222 120 HOH HOH . 
U 3 HOH C 1 201 5 HOH HOH . 
U 3 HOH C 2 202 11 HOH HOH . 
U 3 HOH C 3 203 16 HOH HOH . 
U 3 HOH C 4 204 23 HOH HOH . 
U 3 HOH C 5 205 28 HOH HOH . 
U 3 HOH C 6 206 30 HOH HOH . 
U 3 HOH C 7 207 36 HOH HOH . 
U 3 HOH C 8 208 37 HOH HOH . 
U 3 HOH C 9 209 49 HOH HOH . 
U 3 HOH C 10 210 56 HOH HOH . 
U 3 HOH C 11 211 57 HOH HOH . 
U 3 HOH C 12 212 62 HOH HOH . 
U 3 HOH C 13 213 77 HOH HOH . 
U 3 HOH C 14 214 79 HOH HOH . 
U 3 HOH C 15 215 86 HOH HOH . 
U 3 HOH C 16 216 97 HOH HOH . 
U 3 HOH C 17 217 115 HOH HOH . 
U 3 HOH C 18 218 116 HOH HOH . 
U 3 HOH C 19 219 126 HOH HOH . 
U 3 HOH C 20 220 127 HOH HOH . 
V 3 HOH D 1 201 1 HOH HOH . 
V 3 HOH D 2 202 2 HOH HOH . 
V 3 HOH D 3 203 15 HOH HOH . 
V 3 HOH D 4 204 21 HOH HOH . 
V 3 HOH D 5 205 24 HOH HOH . 
V 3 HOH D 6 206 26 HOH HOH . 
V 3 HOH D 7 207 29 HOH HOH . 
V 3 HOH D 8 208 31 HOH HOH . 
V 3 HOH D 9 209 35 HOH HOH . 
V 3 HOH D 10 210 40 HOH HOH . 
V 3 HOH D 11 211 61 HOH HOH . 
V 3 HOH D 12 212 65 HOH HOH . 
V 3 HOH D 13 213 68 HOH HOH . 
V 3 HOH D 14 214 71 HOH HOH . 
V 3 HOH D 15 215 76 HOH HOH . 
V 3 HOH D 16 216 89 HOH HOH . 
V 3 HOH D 17 217 90 HOH HOH . 
V 3 HOH D 18 218 99 HOH HOH . 
V 3 HOH D 19 219 100 HOH HOH . 
V 3 HOH D 20 220 114 HOH HOH . 
V 3 HOH D 21 221 121 HOH HOH . 
V 3 HOH D 22 222 123 HOH HOH . 
V 3 HOH D 23 223 124 HOH HOH . 
V 3 HOH D 24 224 129 HOH HOH . 
W 3 HOH E 1 201 3 HOH HOH . 
W 3 HOH E 2 202 6 HOH HOH . 
W 3 HOH E 3 203 14 HOH HOH . 
W 3 HOH E 4 204 18 HOH HOH . 
W 3 HOH E 5 205 20 HOH HOH . 
W 3 HOH E 6 206 33 HOH HOH . 
W 3 HOH E 7 207 42 HOH HOH . 
W 3 HOH E 8 208 45 HOH HOH . 
W 3 HOH E 9 209 46 HOH HOH . 
W 3 HOH E 10 210 50 HOH HOH . 
W 3 HOH E 11 211 53 HOH HOH . 
W 3 HOH E 12 212 66 HOH HOH . 
W 3 HOH E 13 213 69 HOH HOH . 
W 3 HOH E 14 214 72 HOH HOH . 
W 3 HOH E 15 215 78 HOH HOH . 
W 3 HOH E 16 216 95 HOH HOH . 
W 3 HOH E 17 217 98 HOH HOH . 
W 3 HOH E 18 218 105 HOH HOH . 
W 3 HOH E 19 219 113 HOH HOH . 
W 3 HOH E 20 220 119 HOH HOH . 
X 3 HOH F 1 201 4 HOH HOH . 
X 3 HOH F 2 202 9 HOH HOH . 
X 3 HOH F 3 203 10 HOH HOH . 
X 3 HOH F 4 204 13 HOH HOH . 
X 3 HOH F 5 205 17 HOH HOH . 
X 3 HOH F 6 206 25 HOH HOH . 
X 3 HOH F 7 207 38 HOH HOH . 
X 3 HOH F 8 208 59 HOH HOH . 
X 3 HOH F 9 209 60 HOH HOH . 
X 3 HOH F 10 210 70 HOH HOH . 
X 3 HOH F 11 211 80 HOH HOH . 
X 3 HOH F 12 212 81 HOH HOH . 
X 3 HOH F 13 213 85 HOH HOH . 
X 3 HOH F 14 214 91 HOH HOH . 
X 3 HOH F 15 215 93 HOH HOH . 
X 3 HOH F 16 216 96 HOH HOH . 
X 3 HOH F 17 217 102 HOH HOH . 
X 3 HOH F 18 218 106 HOH HOH . 
X 3 HOH F 19 219 112 HOH HOH . 
X 3 HOH F 20 220 122 HOH HOH . 
X 3 HOH F 21 221 125 HOH HOH . 
X 3 HOH F 22 222 128 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         P 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -2.088 
_atom_site.Cartn_y               -1.098 
_atom_site.Cartn_z               -6.291 
_atom_site.occupancy             0.6 
_atom_site.B_iso_or_equiv        62.66 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           102 
_atom_site.auth_asym_id          E 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#