data_4J71 # _model_server_result.job_id Gh6esFX2DmXZjQaQcE31bw _model_server_result.datetime_utc '2024-11-04 23:02:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j71 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4J71 # _exptl.entry_id 4J71 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 163.177 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-methyl-1,4-dihydropyrido[2,3-b]pyrazin-3(2H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 99.8 _cell.angle_beta 102.94 _cell.angle_gamma 89.94 _cell.entry_id 4J71 _cell.length_a 63.38 _cell.length_b 67.116 _cell.length_c 67.44 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J71 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 219 A SER 215 1_555 A N PTR 220 A PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C PTR 220 A PTR 216 1_555 A N ILE 221 A ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C SER 219 B SER 215 1_555 B N PTR 220 B PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C PTR 220 B PTR 216 1_555 B N ILE 221 B ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C8 H9 N3 O' _chem_comp.formula_weight 163.177 _chem_comp.id 1JX _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-methyl-1,4-dihydropyrido[2,3-b]pyrazin-3(2H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD CAC 1JX doub 1 n y CAD NAF 1JX sing 2 n y CAC CAE 1JX sing 3 n y NAF CAK 1JX doub 4 n y CAK CAJ 1JX sing 5 n y CAK NAG 1JX sing 6 n n CAE CAJ 1JX doub 7 n y CAJ N 1JX sing 8 n n NAG C 1JX sing 9 n n N CA 1JX sing 10 n n C O 1JX doub 11 n n C CA 1JX sing 12 n n CA CB 1JX sing 13 n n NAG H1 1JX sing 14 n n CAD H2 1JX sing 15 n n CAC H3 1JX sing 16 n n CAE H4 1JX sing 17 n n N H5 1JX sing 18 n n CA H6 1JX sing 19 n n CB H7 1JX sing 20 n n CB H8 1JX sing 21 n n CB H9 1JX sing 22 n n # _atom_sites.entry_id 4J71 _atom_sites.fract_transf_matrix[1][1] 0.015778 _atom_sites.fract_transf_matrix[1][2] -0.000016 _atom_sites.fract_transf_matrix[1][3] 0.003679 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0149 _atom_sites.fract_transf_matrix[2][3] 0.00264 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1JX A 1 501 1 1JX 1JX . D 3 SO4 A 1 502 2 SO4 SO4 . E 3 SO4 A 1 503 4 SO4 SO4 . F 4 CL A 1 504 1 CL CL . G 2 1JX B 1 501 1 1JX 1JX . H 3 SO4 B 1 502 1 SO4 SO4 . I 5 HOH A 1 601 4 HOH HOH . I 5 HOH A 2 602 7 HOH HOH . I 5 HOH A 3 603 9 HOH HOH . I 5 HOH A 4 604 11 HOH HOH . I 5 HOH A 5 605 13 HOH HOH . I 5 HOH A 6 606 15 HOH HOH . I 5 HOH A 7 607 16 HOH HOH . I 5 HOH A 8 608 19 HOH HOH . I 5 HOH A 9 609 25 HOH HOH . I 5 HOH A 10 610 29 HOH HOH . I 5 HOH A 11 611 31 HOH HOH . I 5 HOH A 12 612 36 HOH HOH . I 5 HOH A 13 613 37 HOH HOH . I 5 HOH A 14 614 42 HOH HOH . I 5 HOH A 15 615 47 HOH HOH . I 5 HOH A 16 616 48 HOH HOH . I 5 HOH A 17 617 55 HOH HOH . I 5 HOH A 18 618 57 HOH HOH . I 5 HOH A 19 619 61 HOH HOH . I 5 HOH A 20 620 63 HOH HOH . I 5 HOH A 21 621 74 HOH HOH . I 5 HOH A 22 622 76 HOH HOH . I 5 HOH A 23 623 92 HOH HOH . I 5 HOH A 24 624 93 HOH HOH . I 5 HOH A 25 625 94 HOH HOH . I 5 HOH A 26 626 95 HOH HOH . I 5 HOH A 27 627 96 HOH HOH . I 5 HOH A 28 628 97 HOH HOH . I 5 HOH A 29 629 98 HOH HOH . I 5 HOH A 30 630 100 HOH HOH . I 5 HOH A 31 631 101 HOH HOH . I 5 HOH A 32 632 103 HOH HOH . I 5 HOH A 33 633 114 HOH HOH . I 5 HOH A 34 634 115 HOH HOH . I 5 HOH A 35 635 116 HOH HOH . I 5 HOH A 36 636 117 HOH HOH . I 5 HOH A 37 637 119 HOH HOH . I 5 HOH A 38 638 120 HOH HOH . I 5 HOH A 39 639 121 HOH HOH . I 5 HOH A 40 640 122 HOH HOH . I 5 HOH A 41 641 123 HOH HOH . I 5 HOH A 42 642 124 HOH HOH . I 5 HOH A 43 643 125 HOH HOH . I 5 HOH A 44 644 126 HOH HOH . I 5 HOH A 45 645 127 HOH HOH . I 5 HOH A 46 646 128 HOH HOH . I 5 HOH A 47 647 129 HOH HOH . I 5 HOH A 48 648 130 HOH HOH . I 5 HOH A 49 649 131 HOH HOH . I 5 HOH A 50 650 133 HOH HOH . I 5 HOH A 51 651 134 HOH HOH . I 5 HOH A 52 652 136 HOH HOH . I 5 HOH A 53 653 137 HOH HOH . I 5 HOH A 54 654 138 HOH HOH . I 5 HOH A 55 655 139 HOH HOH . I 5 HOH A 56 656 143 HOH HOH . I 5 HOH A 57 657 144 HOH HOH . I 5 HOH A 58 658 145 HOH HOH . I 5 HOH A 59 659 146 HOH HOH . I 5 HOH A 60 660 147 HOH HOH . I 5 HOH A 61 661 148 HOH HOH . I 5 HOH A 62 662 157 HOH HOH . I 5 HOH A 63 663 160 HOH HOH . I 5 HOH A 64 664 161 HOH HOH . I 5 HOH A 65 665 176 HOH HOH . I 5 HOH A 66 666 177 HOH HOH . I 5 HOH A 67 667 178 HOH HOH . I 5 HOH A 68 668 179 HOH HOH . I 5 HOH A 69 669 180 HOH HOH . I 5 HOH A 70 670 181 HOH HOH . I 5 HOH A 71 671 182 HOH HOH . I 5 HOH A 72 672 183 HOH HOH . I 5 HOH A 73 673 184 HOH HOH . I 5 HOH A 74 674 185 HOH HOH . I 5 HOH A 75 675 186 HOH HOH . I 5 HOH A 76 676 187 HOH HOH . I 5 HOH A 77 677 189 HOH HOH . I 5 HOH A 78 678 190 HOH HOH . I 5 HOH A 79 679 192 HOH HOH . I 5 HOH A 80 680 193 HOH HOH . I 5 HOH A 81 681 194 HOH HOH . I 5 HOH A 82 682 195 HOH HOH . I 5 HOH A 83 683 198 HOH HOH . I 5 HOH A 84 684 200 HOH HOH . I 5 HOH A 85 685 202 HOH HOH . I 5 HOH A 86 686 203 HOH HOH . I 5 HOH A 87 687 204 HOH HOH . I 5 HOH A 88 688 205 HOH HOH . I 5 HOH A 89 689 206 HOH HOH . I 5 HOH A 90 690 208 HOH HOH . I 5 HOH A 91 691 209 HOH HOH . I 5 HOH A 92 692 210 HOH HOH . I 5 HOH A 93 693 211 HOH HOH . I 5 HOH A 94 694 212 HOH HOH . I 5 HOH A 95 695 213 HOH HOH . I 5 HOH A 96 696 216 HOH HOH . I 5 HOH A 97 697 217 HOH HOH . I 5 HOH A 98 698 218 HOH HOH . I 5 HOH A 99 699 256 HOH HOH . I 5 HOH A 100 700 258 HOH HOH . J 5 HOH B 1 601 1 HOH HOH . J 5 HOH B 2 602 5 HOH HOH . J 5 HOH B 3 603 6 HOH HOH . J 5 HOH B 4 604 8 HOH HOH . J 5 HOH B 5 605 10 HOH HOH . J 5 HOH B 6 606 12 HOH HOH . J 5 HOH B 7 607 14 HOH HOH . J 5 HOH B 8 608 20 HOH HOH . J 5 HOH B 9 609 22 HOH HOH . J 5 HOH B 10 610 27 HOH HOH . J 5 HOH B 11 611 30 HOH HOH . J 5 HOH B 12 612 34 HOH HOH . J 5 HOH B 13 613 35 HOH HOH . J 5 HOH B 14 614 40 HOH HOH . J 5 HOH B 15 615 41 HOH HOH . J 5 HOH B 16 616 43 HOH HOH . J 5 HOH B 17 617 44 HOH HOH . J 5 HOH B 18 618 45 HOH HOH . J 5 HOH B 19 619 46 HOH HOH . J 5 HOH B 20 620 50 HOH HOH . J 5 HOH B 21 621 54 HOH HOH . J 5 HOH B 22 622 56 HOH HOH . J 5 HOH B 23 623 59 HOH HOH . J 5 HOH B 24 624 64 HOH HOH . J 5 HOH B 25 625 66 HOH HOH . J 5 HOH B 26 626 73 HOH HOH . J 5 HOH B 27 627 78 HOH HOH . J 5 HOH B 28 628 79 HOH HOH . J 5 HOH B 29 629 81 HOH HOH . J 5 HOH B 30 630 83 HOH HOH . J 5 HOH B 31 631 84 HOH HOH . J 5 HOH B 32 632 87 HOH HOH . J 5 HOH B 33 633 88 HOH HOH . J 5 HOH B 34 634 89 HOH HOH . J 5 HOH B 35 635 90 HOH HOH . J 5 HOH B 36 636 91 HOH HOH . J 5 HOH B 37 637 104 HOH HOH . J 5 HOH B 38 638 105 HOH HOH . J 5 HOH B 39 639 106 HOH HOH . J 5 HOH B 40 640 107 HOH HOH . J 5 HOH B 41 641 108 HOH HOH . J 5 HOH B 42 642 109 HOH HOH . J 5 HOH B 43 643 110 HOH HOH . J 5 HOH B 44 644 111 HOH HOH . J 5 HOH B 45 645 112 HOH HOH . J 5 HOH B 46 646 113 HOH HOH . J 5 HOH B 47 647 118 HOH HOH . J 5 HOH B 48 648 132 HOH HOH . J 5 HOH B 49 649 140 HOH HOH . J 5 HOH B 50 650 142 HOH HOH . J 5 HOH B 51 651 150 HOH HOH . J 5 HOH B 52 652 151 HOH HOH . J 5 HOH B 53 653 152 HOH HOH . J 5 HOH B 54 654 153 HOH HOH . J 5 HOH B 55 655 158 HOH HOH . J 5 HOH B 56 656 162 HOH HOH . J 5 HOH B 57 657 163 HOH HOH . J 5 HOH B 58 658 164 HOH HOH . J 5 HOH B 59 659 165 HOH HOH . J 5 HOH B 60 660 166 HOH HOH . J 5 HOH B 61 661 167 HOH HOH . J 5 HOH B 62 662 168 HOH HOH . J 5 HOH B 63 663 169 HOH HOH . J 5 HOH B 64 664 170 HOH HOH . J 5 HOH B 65 665 171 HOH HOH . J 5 HOH B 66 666 172 HOH HOH . J 5 HOH B 67 667 173 HOH HOH . J 5 HOH B 68 668 174 HOH HOH . J 5 HOH B 69 669 175 HOH HOH . J 5 HOH B 70 670 191 HOH HOH . J 5 HOH B 71 671 201 HOH HOH . J 5 HOH B 72 672 214 HOH HOH . J 5 HOH B 73 673 215 HOH HOH . J 5 HOH B 74 674 220 HOH HOH . J 5 HOH B 75 675 221 HOH HOH . J 5 HOH B 76 676 222 HOH HOH . J 5 HOH B 77 677 223 HOH HOH . J 5 HOH B 78 678 224 HOH HOH . J 5 HOH B 79 679 225 HOH HOH . J 5 HOH B 80 680 226 HOH HOH . J 5 HOH B 81 681 227 HOH HOH . J 5 HOH B 82 682 228 HOH HOH . J 5 HOH B 83 683 229 HOH HOH . J 5 HOH B 84 684 230 HOH HOH . J 5 HOH B 85 685 231 HOH HOH . J 5 HOH B 86 686 234 HOH HOH . J 5 HOH B 87 687 236 HOH HOH . J 5 HOH B 88 688 238 HOH HOH . J 5 HOH B 89 689 239 HOH HOH . J 5 HOH B 90 690 240 HOH HOH . J 5 HOH B 91 691 242 HOH HOH . J 5 HOH B 92 692 243 HOH HOH . J 5 HOH B 93 693 244 HOH HOH . J 5 HOH B 94 694 245 HOH HOH . J 5 HOH B 95 695 246 HOH HOH . J 5 HOH B 96 696 247 HOH HOH . J 5 HOH B 97 697 248 HOH HOH . J 5 HOH B 98 698 249 HOH HOH . J 5 HOH B 99 699 250 HOH HOH . J 5 HOH B 100 700 251 HOH HOH . J 5 HOH B 101 701 252 HOH HOH . J 5 HOH B 102 702 253 HOH HOH . J 5 HOH B 103 703 254 HOH HOH . J 5 HOH B 104 704 255 HOH HOH . J 5 HOH B 105 705 257 HOH HOH . J 5 HOH B 106 706 259 HOH HOH . J 5 HOH B 107 707 260 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 1JX . . . C 2 -35.249 30.283 20.231 1 61.89 ? O 1JX 501 A 1 HETATM 2 C C 1JX . . . C 2 -35.889 29.41 19.648 1 65.18 ? C 1JX 501 A 1 HETATM 3 N NAG 1JX . . . C 2 -36.106 29.555 18.268 1 58.13 ? NAG 1JX 501 A 1 HETATM 4 C CAK 1JX . . . C 2 -36.826 28.591 17.553 1 68.46 ? CAK 1JX 501 A 1 HETATM 5 N NAF 1JX . . . C 2 -36.847 28.617 16.214 1 61.32 ? NAF 1JX 501 A 1 HETATM 6 C CAD 1JX . . . C 2 -37.57 27.649 15.507 1 61.41 ? CAD 1JX 501 A 1 HETATM 7 C CAC 1JX . . . C 2 -38.269 26.659 16.187 1 76.07 ? CAC 1JX 501 A 1 HETATM 8 C CAE 1JX . . . C 2 -38.244 26.637 17.574 1 65.05 ? CAE 1JX 501 A 1 HETATM 9 C CAJ 1JX . . . C 2 -37.518 27.61 18.251 1 62.15 ? CAJ 1JX 501 A 1 HETATM 10 N N 1JX . . . C 2 -37.474 27.616 19.645 1 62.99 ? N 1JX 501 A 1 HETATM 11 C CA 1JX . . . C 2 -36.375 28.306 20.361 1 68.57 ? CA 1JX 501 A 1 HETATM 12 C CB 1JX . . . C 2 -36.846 28.767 21.743 1 75.42 ? CB 1JX 501 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 28 _model_server_stats.element_count 12 #