data_4J76 # _model_server_result.job_id W3IWrftlfoDuyq7KriK5Bw _model_server_result.datetime_utc '2024-10-19 07:25:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j76 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 4J76 # _exptl.entry_id 4J76 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J76 _cell.length_a 117.301 _cell.length_b 190.669 _cell.length_c 51.732 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J76 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4J76 _atom_sites.fract_transf_matrix[1][1] 0.008525 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 701 1 GOL GOL . D 2 GOL A 1 702 2 GOL GOL . E 2 GOL A 1 703 5 GOL GOL . F 2 GOL B 1 701 3 GOL GOL . G 3 HOH A 1 801 1 HOH HOH . G 3 HOH A 2 802 3 HOH HOH . G 3 HOH A 3 803 4 HOH HOH . G 3 HOH A 4 804 6 HOH HOH . G 3 HOH A 5 805 7 HOH HOH . G 3 HOH A 6 806 8 HOH HOH . G 3 HOH A 7 807 11 HOH HOH . G 3 HOH A 8 808 14 HOH HOH . G 3 HOH A 9 809 19 HOH HOH . G 3 HOH A 10 810 20 HOH HOH . G 3 HOH A 11 811 21 HOH HOH . G 3 HOH A 12 812 23 HOH HOH . G 3 HOH A 13 813 24 HOH HOH . G 3 HOH A 14 814 25 HOH HOH . G 3 HOH A 15 815 27 HOH HOH . G 3 HOH A 16 816 29 HOH HOH . G 3 HOH A 17 817 30 HOH HOH . G 3 HOH A 18 818 32 HOH HOH . G 3 HOH A 19 819 33 HOH HOH . G 3 HOH A 20 820 35 HOH HOH . G 3 HOH A 21 821 36 HOH HOH . G 3 HOH A 22 822 40 HOH HOH . G 3 HOH A 23 823 41 HOH HOH . G 3 HOH A 24 824 42 HOH HOH . G 3 HOH A 25 825 43 HOH HOH . G 3 HOH A 26 826 45 HOH HOH . G 3 HOH A 27 827 47 HOH HOH . G 3 HOH A 28 828 48 HOH HOH . G 3 HOH A 29 829 49 HOH HOH . G 3 HOH A 30 830 51 HOH HOH . G 3 HOH A 31 831 52 HOH HOH . G 3 HOH A 32 832 53 HOH HOH . G 3 HOH A 33 833 55 HOH HOH . G 3 HOH A 34 834 56 HOH HOH . G 3 HOH A 35 835 57 HOH HOH . G 3 HOH A 36 836 58 HOH HOH . G 3 HOH A 37 837 59 HOH HOH . G 3 HOH A 38 838 60 HOH HOH . G 3 HOH A 39 839 62 HOH HOH . G 3 HOH A 40 840 64 HOH HOH . G 3 HOH A 41 841 65 HOH HOH . G 3 HOH A 42 842 66 HOH HOH . G 3 HOH A 43 843 67 HOH HOH . G 3 HOH A 44 844 70 HOH HOH . G 3 HOH A 45 845 71 HOH HOH . G 3 HOH A 46 846 72 HOH HOH . G 3 HOH A 47 847 73 HOH HOH . G 3 HOH A 48 848 74 HOH HOH . G 3 HOH A 49 849 76 HOH HOH . G 3 HOH A 50 850 77 HOH HOH . G 3 HOH A 51 851 79 HOH HOH . G 3 HOH A 52 852 80 HOH HOH . G 3 HOH A 53 853 82 HOH HOH . G 3 HOH A 54 854 83 HOH HOH . G 3 HOH A 55 855 84 HOH HOH . G 3 HOH A 56 856 85 HOH HOH . G 3 HOH A 57 857 86 HOH HOH . G 3 HOH A 58 858 87 HOH HOH . G 3 HOH A 59 859 89 HOH HOH . G 3 HOH A 60 860 90 HOH HOH . G 3 HOH A 61 861 91 HOH HOH . G 3 HOH A 62 862 92 HOH HOH . G 3 HOH A 63 863 93 HOH HOH . G 3 HOH A 64 864 95 HOH HOH . G 3 HOH A 65 865 96 HOH HOH . G 3 HOH A 66 866 97 HOH HOH . G 3 HOH A 67 867 99 HOH HOH . G 3 HOH A 68 868 100 HOH HOH . G 3 HOH A 69 869 101 HOH HOH . G 3 HOH A 70 870 102 HOH HOH . G 3 HOH A 71 871 103 HOH HOH . G 3 HOH A 72 872 104 HOH HOH . G 3 HOH A 73 873 105 HOH HOH . G 3 HOH A 74 874 106 HOH HOH . G 3 HOH A 75 875 107 HOH HOH . G 3 HOH A 76 876 108 HOH HOH . G 3 HOH A 77 877 110 HOH HOH . G 3 HOH A 78 878 111 HOH HOH . G 3 HOH A 79 879 114 HOH HOH . G 3 HOH A 80 880 115 HOH HOH . G 3 HOH A 81 881 117 HOH HOH . G 3 HOH A 82 882 118 HOH HOH . G 3 HOH A 83 883 119 HOH HOH . G 3 HOH A 84 884 120 HOH HOH . G 3 HOH A 85 885 121 HOH HOH . G 3 HOH A 86 886 123 HOH HOH . G 3 HOH A 87 887 124 HOH HOH . G 3 HOH A 88 888 125 HOH HOH . G 3 HOH A 89 889 126 HOH HOH . G 3 HOH A 90 890 127 HOH HOH . G 3 HOH A 91 891 129 HOH HOH . G 3 HOH A 92 892 130 HOH HOH . G 3 HOH A 93 893 133 HOH HOH . G 3 HOH A 94 894 134 HOH HOH . G 3 HOH A 95 895 137 HOH HOH . G 3 HOH A 96 896 138 HOH HOH . G 3 HOH A 97 897 139 HOH HOH . G 3 HOH A 98 898 140 HOH HOH . G 3 HOH A 99 899 142 HOH HOH . G 3 HOH A 100 900 146 HOH HOH . G 3 HOH A 101 901 147 HOH HOH . G 3 HOH A 102 902 149 HOH HOH . G 3 HOH A 103 903 150 HOH HOH . G 3 HOH A 104 904 151 HOH HOH . G 3 HOH A 105 905 153 HOH HOH . G 3 HOH A 106 906 154 HOH HOH . G 3 HOH A 107 907 155 HOH HOH . G 3 HOH A 108 908 156 HOH HOH . G 3 HOH A 109 909 157 HOH HOH . G 3 HOH A 110 910 158 HOH HOH . G 3 HOH A 111 911 159 HOH HOH . G 3 HOH A 112 912 160 HOH HOH . G 3 HOH A 113 913 162 HOH HOH . G 3 HOH A 114 914 163 HOH HOH . G 3 HOH A 115 915 164 HOH HOH . G 3 HOH A 116 916 165 HOH HOH . G 3 HOH A 117 917 169 HOH HOH . G 3 HOH A 118 918 170 HOH HOH . G 3 HOH A 119 919 172 HOH HOH . G 3 HOH A 120 920 174 HOH HOH . G 3 HOH A 121 921 175 HOH HOH . G 3 HOH A 122 922 176 HOH HOH . G 3 HOH A 123 923 179 HOH HOH . G 3 HOH A 124 924 180 HOH HOH . G 3 HOH A 125 925 181 HOH HOH . G 3 HOH A 126 926 182 HOH HOH . G 3 HOH A 127 927 184 HOH HOH . G 3 HOH A 128 928 187 HOH HOH . G 3 HOH A 129 929 189 HOH HOH . G 3 HOH A 130 930 190 HOH HOH . G 3 HOH A 131 931 192 HOH HOH . G 3 HOH A 132 932 193 HOH HOH . G 3 HOH A 133 933 195 HOH HOH . G 3 HOH A 134 934 197 HOH HOH . G 3 HOH A 135 935 199 HOH HOH . G 3 HOH A 136 936 200 HOH HOH . G 3 HOH A 137 937 203 HOH HOH . G 3 HOH A 138 938 204 HOH HOH . G 3 HOH A 139 939 205 HOH HOH . G 3 HOH A 140 940 206 HOH HOH . G 3 HOH A 141 941 207 HOH HOH . G 3 HOH A 142 942 208 HOH HOH . G 3 HOH A 143 943 209 HOH HOH . G 3 HOH A 144 944 213 HOH HOH . G 3 HOH A 145 945 214 HOH HOH . G 3 HOH A 146 946 217 HOH HOH . G 3 HOH A 147 947 218 HOH HOH . G 3 HOH A 148 948 219 HOH HOH . G 3 HOH A 149 949 220 HOH HOH . G 3 HOH A 150 950 221 HOH HOH . G 3 HOH A 151 951 222 HOH HOH . G 3 HOH A 152 952 224 HOH HOH . G 3 HOH A 153 953 225 HOH HOH . G 3 HOH A 154 954 230 HOH HOH . G 3 HOH A 155 955 231 HOH HOH . G 3 HOH A 156 956 232 HOH HOH . G 3 HOH A 157 957 233 HOH HOH . G 3 HOH A 158 958 234 HOH HOH . G 3 HOH A 159 959 235 HOH HOH . G 3 HOH A 160 960 236 HOH HOH . G 3 HOH A 161 961 237 HOH HOH . G 3 HOH A 162 962 238 HOH HOH . G 3 HOH A 163 963 239 HOH HOH . G 3 HOH A 164 964 240 HOH HOH . G 3 HOH A 165 965 241 HOH HOH . G 3 HOH A 166 966 245 HOH HOH . G 3 HOH A 167 967 247 HOH HOH . G 3 HOH A 168 968 248 HOH HOH . G 3 HOH A 169 969 249 HOH HOH . G 3 HOH A 170 970 254 HOH HOH . G 3 HOH A 171 971 255 HOH HOH . G 3 HOH A 172 972 256 HOH HOH . G 3 HOH A 173 973 270 HOH HOH . G 3 HOH A 174 974 271 HOH HOH . G 3 HOH A 175 975 272 HOH HOH . G 3 HOH A 176 976 273 HOH HOH . G 3 HOH A 177 977 274 HOH HOH . G 3 HOH A 178 978 275 HOH HOH . G 3 HOH A 179 979 276 HOH HOH . G 3 HOH A 180 980 277 HOH HOH . G 3 HOH A 181 981 278 HOH HOH . G 3 HOH A 182 982 279 HOH HOH . G 3 HOH A 183 983 282 HOH HOH . G 3 HOH A 184 984 283 HOH HOH . G 3 HOH A 185 985 285 HOH HOH . G 3 HOH A 186 986 286 HOH HOH . G 3 HOH A 187 987 287 HOH HOH . G 3 HOH A 188 988 289 HOH HOH . G 3 HOH A 189 989 290 HOH HOH . G 3 HOH A 190 990 291 HOH HOH . G 3 HOH A 191 991 294 HOH HOH . G 3 HOH A 192 992 295 HOH HOH . G 3 HOH A 193 993 296 HOH HOH . G 3 HOH A 194 994 301 HOH HOH . G 3 HOH A 195 995 302 HOH HOH . G 3 HOH A 196 996 306 HOH HOH . G 3 HOH A 197 997 307 HOH HOH . G 3 HOH A 198 998 309 HOH HOH . G 3 HOH A 199 999 310 HOH HOH . G 3 HOH A 200 1000 315 HOH HOH . G 3 HOH A 201 1001 317 HOH HOH . G 3 HOH A 202 1002 318 HOH HOH . G 3 HOH A 203 1003 319 HOH HOH . G 3 HOH A 204 1004 320 HOH HOH . G 3 HOH A 205 1005 321 HOH HOH . G 3 HOH A 206 1006 324 HOH HOH . H 3 HOH B 1 801 2 HOH HOH . H 3 HOH B 2 802 5 HOH HOH . H 3 HOH B 3 803 9 HOH HOH . H 3 HOH B 4 804 10 HOH HOH . H 3 HOH B 5 805 12 HOH HOH . H 3 HOH B 6 806 13 HOH HOH . H 3 HOH B 7 807 15 HOH HOH . H 3 HOH B 8 808 16 HOH HOH . H 3 HOH B 9 809 17 HOH HOH . H 3 HOH B 10 810 18 HOH HOH . H 3 HOH B 11 811 22 HOH HOH . H 3 HOH B 12 812 26 HOH HOH . H 3 HOH B 13 813 28 HOH HOH . H 3 HOH B 14 814 31 HOH HOH . H 3 HOH B 15 815 34 HOH HOH . H 3 HOH B 16 816 37 HOH HOH . H 3 HOH B 17 817 38 HOH HOH . H 3 HOH B 18 818 39 HOH HOH . H 3 HOH B 19 819 44 HOH HOH . H 3 HOH B 20 820 46 HOH HOH . H 3 HOH B 21 821 50 HOH HOH . H 3 HOH B 22 822 54 HOH HOH . H 3 HOH B 23 823 61 HOH HOH . H 3 HOH B 24 824 63 HOH HOH . H 3 HOH B 25 825 68 HOH HOH . H 3 HOH B 26 826 69 HOH HOH . H 3 HOH B 27 827 75 HOH HOH . H 3 HOH B 28 828 78 HOH HOH . H 3 HOH B 29 829 81 HOH HOH . H 3 HOH B 30 830 88 HOH HOH . H 3 HOH B 31 831 94 HOH HOH . H 3 HOH B 32 832 98 HOH HOH . H 3 HOH B 33 833 109 HOH HOH . H 3 HOH B 34 834 112 HOH HOH . H 3 HOH B 35 835 113 HOH HOH . H 3 HOH B 36 836 116 HOH HOH . H 3 HOH B 37 837 122 HOH HOH . H 3 HOH B 38 838 128 HOH HOH . H 3 HOH B 39 839 131 HOH HOH . H 3 HOH B 40 840 132 HOH HOH . H 3 HOH B 41 841 135 HOH HOH . H 3 HOH B 42 842 136 HOH HOH . H 3 HOH B 43 843 141 HOH HOH . H 3 HOH B 44 844 143 HOH HOH . H 3 HOH B 45 845 144 HOH HOH . H 3 HOH B 46 846 145 HOH HOH . H 3 HOH B 47 847 148 HOH HOH . H 3 HOH B 48 848 152 HOH HOH . H 3 HOH B 49 849 161 HOH HOH . H 3 HOH B 50 850 166 HOH HOH . H 3 HOH B 51 851 167 HOH HOH . H 3 HOH B 52 852 168 HOH HOH . H 3 HOH B 53 853 171 HOH HOH . H 3 HOH B 54 854 173 HOH HOH . H 3 HOH B 55 855 177 HOH HOH . H 3 HOH B 56 856 178 HOH HOH . H 3 HOH B 57 857 183 HOH HOH . H 3 HOH B 58 858 185 HOH HOH . H 3 HOH B 59 859 186 HOH HOH . H 3 HOH B 60 860 188 HOH HOH . H 3 HOH B 61 861 191 HOH HOH . H 3 HOH B 62 862 194 HOH HOH . H 3 HOH B 63 863 196 HOH HOH . H 3 HOH B 64 864 198 HOH HOH . H 3 HOH B 65 865 201 HOH HOH . H 3 HOH B 66 866 202 HOH HOH . H 3 HOH B 67 867 210 HOH HOH . H 3 HOH B 68 868 211 HOH HOH . H 3 HOH B 69 869 212 HOH HOH . H 3 HOH B 70 870 215 HOH HOH . H 3 HOH B 71 871 216 HOH HOH . H 3 HOH B 72 872 223 HOH HOH . H 3 HOH B 73 873 226 HOH HOH . H 3 HOH B 74 874 227 HOH HOH . H 3 HOH B 75 875 228 HOH HOH . H 3 HOH B 76 876 229 HOH HOH . H 3 HOH B 77 877 242 HOH HOH . H 3 HOH B 78 878 243 HOH HOH . H 3 HOH B 79 879 244 HOH HOH . H 3 HOH B 80 880 246 HOH HOH . H 3 HOH B 81 881 250 HOH HOH . H 3 HOH B 82 882 251 HOH HOH . H 3 HOH B 83 883 252 HOH HOH . H 3 HOH B 84 884 253 HOH HOH . H 3 HOH B 85 885 258 HOH HOH . H 3 HOH B 86 886 259 HOH HOH . H 3 HOH B 87 887 260 HOH HOH . H 3 HOH B 88 888 261 HOH HOH . H 3 HOH B 89 889 262 HOH HOH . H 3 HOH B 90 890 263 HOH HOH . H 3 HOH B 91 891 264 HOH HOH . H 3 HOH B 92 892 265 HOH HOH . H 3 HOH B 93 893 266 HOH HOH . H 3 HOH B 94 894 267 HOH HOH . H 3 HOH B 95 895 268 HOH HOH . H 3 HOH B 96 896 269 HOH HOH . H 3 HOH B 97 897 280 HOH HOH . H 3 HOH B 98 898 281 HOH HOH . H 3 HOH B 99 899 284 HOH HOH . H 3 HOH B 100 900 288 HOH HOH . H 3 HOH B 101 901 292 HOH HOH . H 3 HOH B 102 902 293 HOH HOH . H 3 HOH B 103 903 297 HOH HOH . H 3 HOH B 104 904 298 HOH HOH . H 3 HOH B 105 905 299 HOH HOH . H 3 HOH B 106 906 300 HOH HOH . H 3 HOH B 107 907 303 HOH HOH . H 3 HOH B 108 908 304 HOH HOH . H 3 HOH B 109 909 305 HOH HOH . H 3 HOH B 110 910 308 HOH HOH . H 3 HOH B 111 911 311 HOH HOH . H 3 HOH B 112 912 312 HOH HOH . H 3 HOH B 113 913 313 HOH HOH . H 3 HOH B 114 914 314 HOH HOH . H 3 HOH B 115 915 316 HOH HOH . H 3 HOH B 116 916 322 HOH HOH . H 3 HOH B 117 917 323 HOH HOH . H 3 HOH B 118 918 325 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 34.91 6.252 21.793 1 72.36 ? C1 GOL 703 A 1 HETATM 2 O O1 GOL . . . E 2 35.905 5.23 21.628 1 72.59 ? O1 GOL 703 A 1 HETATM 3 C C2 GOL . . . E 2 35.481 7.633 21.469 1 70.12 ? C2 GOL 703 A 1 HETATM 4 O O2 GOL . . . E 2 36.789 7.516 20.9 1 72.34 ? O2 GOL 703 A 1 HETATM 5 C C3 GOL . . . E 2 34.607 8.375 20.463 1 69.68 ? C3 GOL 703 A 1 HETATM 6 O O3 GOL . . . E 2 33.271 8.548 20.951 1 69.32 ? O3 GOL 703 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #