data_4J7C # _model_server_result.job_id zdMmn8-GNbm9N7KR-SWwEA _model_server_result.datetime_utc '2024-11-16 13:26:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j7c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":601}' # _entry.id 4J7C # _exptl.entry_id 4J7C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.69 _cell.angle_gamma 90 _cell.entry_id 4J7C _cell.length_a 146.52 _cell.length_b 140.19 _cell.length_c 153.93 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J7C _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? decameric 10 author_defined_assembly 1 ? decameric 10 author_defined_assembly 2 PISA dodecameric 12 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,M,N,O,P,Q,R,S,T,U,V 1 1 A,B,C,D,E,F,G,H,K,L,M,N,O,P,Q,R,S,T,W,X 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I O VAL 80 I VAL 60 1_555 U K K . I K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc2 I O THR 81 I THR 61 1_555 U K K . I K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc3 I O ASN 195 I ASN 175 1_555 U K K . I K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc4 I O ALA 196 I ALA 176 1_555 U K K . I K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc5 I O THR 298 I THR 278 1_555 U K K . I K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc6 I O ALA 299 I ALA 279 1_555 U K K . I K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc7 I O THR 410 I THR 390 1_555 U K K . I K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc8 I O VAL 411 I VAL 391 1_555 U K K . I K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc9 J O VAL 80 J VAL 60 1_555 V K K . J K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc10 J O THR 81 J THR 61 1_555 V K K . J K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc11 J O ASN 195 J ASN 175 1_555 V K K . J K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc12 J O ALA 196 J ALA 176 1_555 V K K . J K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc13 J O THR 298 J THR 278 1_555 V K K . J K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc14 J O ALA 299 J ALA 279 1_555 V K K . J K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc15 J O THR 410 J THR 390 1_555 V K K . J K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc16 J O VAL 411 J VAL 391 1_555 V K K . J K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc17 K O VAL 80 K VAL 60 1_555 W K K . K K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc18 K O THR 81 K THR 61 1_555 W K K . K K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc19 K O ASN 195 K ASN 175 1_555 W K K . K K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc20 K O ALA 196 K ALA 176 1_555 W K K . K K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc21 K O THR 298 K THR 278 1_555 W K K . K K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc22 K O ALA 299 K ALA 279 1_555 W K K . K K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc23 K O THR 410 K THR 390 1_555 W K K . K K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc24 K O VAL 411 K VAL 391 1_555 W K K . K K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc25 L O VAL 80 L VAL 60 1_555 X K K . L K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc26 L O THR 81 L THR 61 1_555 X K K . L K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc27 L O ASN 195 L ASN 175 1_555 X K K . L K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc28 L O ALA 196 L ALA 176 1_555 X K K . L K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc29 L O THR 298 L THR 278 1_555 X K K . L K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc30 L O ALA 299 L ALA 279 1_555 X K K . L K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc31 L O THR 410 L THR 390 1_555 X K K . L K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc32 L O VAL 411 L VAL 391 1_555 X K K . L K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4J7C _atom_sites.fract_transf_matrix[1][1] 0.006825 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001917 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007133 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 ATP A 1 601 601 ATP ATP . N 3 ATP B 1 301 602 ATP ATP . O 3 ATP C 1 601 601 ATP ATP . P 3 ATP D 1 301 602 ATP ATP . Q 3 ATP E 1 601 601 ATP ATP . R 3 ATP F 1 301 602 ATP ATP . S 3 ATP G 1 601 601 ATP ATP . T 3 ATP H 1 301 602 ATP ATP . U 4 K I 1 501 4 K K . V 4 K J 1 501 3 K K . W 4 K K 1 501 1 K K . X 4 K L 1 501 2 K K . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . O 3 -0.385 4.9 38.902 1 37.32 ? PG ATP 601 C 1 HETATM 2 O O1G ATP . . . O 3 0.935 4.165 38.794 1 36.27 ? O1G ATP 601 C 1 HETATM 3 O O2G ATP . . . O 3 -1.479 3.916 39.199 1 37.47 ? O2G ATP 601 C 1 HETATM 4 O O3G ATP . . . O 3 -0.704 5.589 37.597 1 37.45 ? O3G ATP 601 C 1 HETATM 5 P PB ATP . . . O 3 0.708 7.034 40.275 1 43.71 ? PB ATP 601 C 1 HETATM 6 O O1B ATP . . . O 3 0.368 8.266 39.389 1 44.09 ? O1B ATP 601 C 1 HETATM 7 O O2B ATP . . . O 3 0.69 7.494 41.762 1 44.75 ? O2B ATP 601 C 1 HETATM 8 O O3B ATP . . . O 3 -0.39 5.931 40.076 1 40.4 ? O3B ATP 601 C 1 HETATM 9 P PA ATP . . . O 3 3.436 7.384 39.891 1 42.53 ? PA ATP 601 C 1 HETATM 10 O O1A ATP . . . O 3 3.82 6.211 38.932 1 42.88 ? O1A ATP 601 C 1 HETATM 11 O O2A ATP . . . O 3 4.784 6.952 40.573 1 43.21 ? O2A ATP 601 C 1 HETATM 12 O O3A ATP . . . O 3 2.137 6.484 39.933 1 43.36 ? O3A ATP 601 C 1 HETATM 13 O O5' ATP . . . O 3 3.596 8.424 38.72 1 41.78 ? O5' ATP 601 C 1 HETATM 14 C C5' ATP . . . O 3 4.842 8.667 38.179 1 39.96 ? C5' ATP 601 C 1 HETATM 15 C C4' ATP . . . O 3 4.884 8.195 36.757 1 38.2 ? C4' ATP 601 C 1 HETATM 16 O O4' ATP . . . O 3 5.356 9.224 35.953 1 37.43 ? O4' ATP 601 C 1 HETATM 17 C C3' ATP . . . O 3 5.783 7.028 36.588 1 37.57 ? C3' ATP 601 C 1 HETATM 18 O O3' ATP . . . O 3 5.364 6.233 35.542 1 35.97 ? O3' ATP 601 C 1 HETATM 19 C C2' ATP . . . O 3 7.073 7.662 36.313 1 37.47 ? C2' ATP 601 C 1 HETATM 20 O O2' ATP . . . O 3 7.859 6.851 35.535 1 38.03 ? O2' ATP 601 C 1 HETATM 21 C C1' ATP . . . O 3 6.663 8.895 35.599 1 37.52 ? C1' ATP 601 C 1 HETATM 22 N N9 ATP . . . O 3 7.457 10.041 35.899 1 37 ? N9 ATP 601 C 1 HETATM 23 C C8 ATP . . . O 3 7.901 10.431 37.094 1 36.8 ? C8 ATP 601 C 1 HETATM 24 N N7 ATP . . . O 3 8.58 11.551 36.977 1 37.12 ? N7 ATP 601 C 1 HETATM 25 C C5 ATP . . . O 3 8.596 11.939 35.708 1 37.75 ? C5 ATP 601 C 1 HETATM 26 C C6 ATP . . . O 3 9.139 13.007 35.008 1 37.99 ? C6 ATP 601 C 1 HETATM 27 N N6 ATP . . . O 3 9.896 14.02 35.677 1 38.04 ? N6 ATP 601 C 1 HETATM 28 N N1 ATP . . . O 3 8.954 13.094 33.68 1 38.29 ? N1 ATP 601 C 1 HETATM 29 C C2 ATP . . . O 3 8.251 12.168 32.994 1 38.34 ? C2 ATP 601 C 1 HETATM 30 N N3 ATP . . . O 3 7.716 11.112 33.649 1 38.4 ? N3 ATP 601 C 1 HETATM 31 C C4 ATP . . . O 3 7.867 10.974 34.989 1 37.97 ? C4 ATP 601 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 408 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 31 #