data_4J7T # _model_server_result.job_id VMQS-SM8MNEVN4HJhRCtyg _model_server_result.datetime_utc '2024-11-25 10:44:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j7t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4J7T # _exptl.entry_id 4J7T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 439.526 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-gamma-glutamyl-S-(4-phenylbutyl)-L-cysteinylglycine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J7T _cell.length_a 168.392 _cell.length_b 168.392 _cell.length_c 168.392 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J7T _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA dodecameric 12 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2,3 A,B,C,D 2 1,4,5,6,7,8,2,9,10,3,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 4 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 10 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 7 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id NI _struct_conn.ptnr2_label_comp_id NI _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NI _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.114 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H29 N3 O6 S' _chem_comp.formula_weight 439.526 _chem_comp.id 1JO _chem_comp.mon_nstd_flag . _chem_comp.name D-gamma-glutamyl-S-(4-phenylbutyl)-L-cysteinylglycine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAI CAH 1JO doub 1 n y CAI CAK 1JO sing 2 n y CAH CAJ 1JO sing 3 n y CAK CBB 1JO doub 4 n y CAJ CAL 1JO doub 5 n y CBB CAL 1JO sing 6 n y CBB CAR 1JO sing 7 n n CAR CAN 1JO sing 8 n n CB CG 1JO sing 9 n n CB CA 1JO sing 10 n n CG CD 1JO sing 11 n n N CA 1JO sing 12 n n OAE CBA 1JO doub 13 n n OXT C 1JO doub 14 n n CBA CBD 1JO sing 15 n n CBA NAU 1JO sing 16 n n CA C 1JO sing 17 n n OAF CAX 1JO doub 18 n n CBD CAT 1JO sing 19 n n CBD NE2 1JO sing 20 n n CAQ NAU 1JO sing 21 n n CAQ CAX 1JO sing 22 n n CAN CAM 1JO sing 23 n n C O 1JO sing 24 n n CD NE2 1JO sing 25 n n CD OE1 1JO doub 26 n n CAT SAW 1JO sing 27 n n CAX OAB 1JO sing 28 n n SAW CAO 1JO sing 29 n n CAM CAO 1JO sing 30 n n O H1 1JO sing 31 n n CA H2 1JO sing 32 n n N H3 1JO sing 33 n n N H4 1JO sing 34 n n CB H6 1JO sing 35 n n CB H7 1JO sing 36 n n CG H8 1JO sing 37 n n CG H9 1JO sing 38 n n NE2 H10 1JO sing 39 n n CBD H11 1JO sing 40 n n NAU H12 1JO sing 41 n n CAQ H13 1JO sing 42 n n CAQ H14 1JO sing 43 n n OAB H15 1JO sing 44 n n CAT H16 1JO sing 45 n n CAT H17 1JO sing 46 n n CAO H18 1JO sing 47 n n CAO H19 1JO sing 48 n n CAM H20 1JO sing 49 n n CAM H21 1JO sing 50 n n CAN H22 1JO sing 51 n n CAN H23 1JO sing 52 n n CAR H24 1JO sing 53 n n CAR H25 1JO sing 54 n n CAK H26 1JO sing 55 n n CAI H27 1JO sing 56 n n CAH H28 1JO sing 57 n n CAJ H29 1JO sing 58 n n CAL H30 1JO sing 59 n n # _atom_sites.entry_id 4J7T _atom_sites.fract_transf_matrix[1][1] 0.005939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 201 1151 NI NI . C 3 SO4 A 1 202 1164 SO4 SO4 . D 4 1JO A 1 203 1 1JO DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 1JO . . . D 4 13.786 -18.707 -4.036 1 83.19 ? O 1JO 203 A 1 HETATM 2 C C 1JO . . . D 4 14.057 -18.583 -5.238 1 91.98 ? C 1JO 203 A 1 HETATM 3 O OXT 1JO . . . D 4 13.169 -18.232 -6.049 1 106.94 ? OXT 1JO 203 A 1 HETATM 4 C CA 1JO . . . D 4 15.437 -18.856 -5.719 1 86.61 ? CA 1JO 203 A 1 HETATM 5 N N 1JO . . . D 4 15.968 -17.686 -6.383 1 84.36 ? N 1JO 203 A 1 HETATM 6 C CB 1JO . . . D 4 15.422 -20.012 -6.668 1 81.27 ? CB 1JO 203 A 1 HETATM 7 C CG 1JO . . . D 4 16.55 -21.016 -6.599 1 62.37 ? CG 1JO 203 A 1 HETATM 8 C CD 1JO . . . D 4 17.028 -21.453 -5.229 1 57.33 ? CD 1JO 203 A 1 HETATM 9 O OE1 1JO . . . D 4 17.649 -20.661 -4.526 1 67.45 ? OE1 1JO 203 A 1 HETATM 10 N NE2 1JO . . . D 4 16.765 -22.799 -4.732 1 67.64 ? NE2 1JO 203 A 1 HETATM 11 C CBD 1JO . . . D 4 16.376 -23.86 -5.593 1 74.86 ? CBD 1JO 203 A 1 HETATM 12 C CBA 1JO . . . D 4 14.892 -23.842 -5.775 1 71.16 ? CBA 1JO 203 A 1 HETATM 13 O OAE 1JO . . . D 4 14.317 -24.762 -6.361 1 70.11 ? OAE 1JO 203 A 1 HETATM 14 N NAU 1JO . . . D 4 14.153 -22.713 -5.259 1 76.95 ? NAU 1JO 203 A 1 HETATM 15 C CAQ 1JO . . . D 4 12.75 -22.564 -5.487 1 67.11 ? CAQ 1JO 203 A 1 HETATM 16 C CAX 1JO . . . D 4 11.885 -23.679 -4.914 1 73.01 ? CAX 1JO 203 A 1 HETATM 17 O OAF 1JO . . . D 4 10.997 -24.227 -5.651 1 66.44 ? OAF 1JO 203 A 1 HETATM 18 O OAB 1JO . . . D 4 12.061 -24.082 -3.704 1 82.5 ? OAB 1JO 203 A 1 HETATM 19 C CAT 1JO . . . D 4 16.859 -25.167 -4.997 1 84.09 ? CAT 1JO 203 A 1 HETATM 20 S SAW 1JO . . . D 4 18.503 -25.09 -4.202 1 86.98 ? SAW 1JO 203 A 1 HETATM 21 C CAO 1JO . . . D 4 19.122 -26.683 -3.82 1 104.66 ? CAO 1JO 203 A 1 HETATM 22 C CAM 1JO . . . D 4 20.545 -26.956 -4.195 1 101.3 ? CAM 1JO 203 A 1 HETATM 23 C CAN 1JO . . . D 4 21.065 -26.254 -5.411 1 70.07 ? CAN 1JO 203 A 1 HETATM 24 C CAR 1JO . . . D 4 20.454 -26.668 -6.785 1 79.55 ? CAR 1JO 203 A 1 HETATM 25 C CBB 1JO . . . D 4 21.405 -27.106 -7.88 1 88.51 ? CBB 1JO 203 A 1 HETATM 26 C CAK 1JO . . . D 4 21.375 -26.457 -9.108 1 95.99 ? CAK 1JO 203 A 1 HETATM 27 C CAI 1JO . . . D 4 22.384 -26.668 -10.022 1 91.57 ? CAI 1JO 203 A 1 HETATM 28 C CAH 1JO . . . D 4 23.4 -27.55 -9.737 1 75.58 ? CAH 1JO 203 A 1 HETATM 29 C CAJ 1JO . . . D 4 23.504 -28.094 -8.467 1 73.4 ? CAJ 1JO 203 A 1 HETATM 30 C CAL 1JO . . . D 4 22.529 -27.813 -7.536 1 85.04 ? CAL 1JO 203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 30 #