data_4J7X # _model_server_result.job_id jXYD4ACmL5kPer5V-9_uFA _model_server_result.datetime_utc '2024-11-28 16:19:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 4J7X # _exptl.entry_id 4J7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4J7X _cell.length_a 149.194 _cell.length_b 149.194 _cell.length_c 180.552 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,P,Q,EA,FA 1 1 C,D,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,GA,HA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 L N N ? 2 R N N ? 2 Y N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 250 n n PA O2A NAP sing 251 n n PA O5B NAP sing 252 n n PA O3 NAP sing 253 n n O2A HOA2 NAP sing 254 n n O5B C5B NAP sing 255 n n C5B C4B NAP sing 256 n n C5B H51A NAP sing 257 n n C5B H52A NAP sing 258 n n C4B O4B NAP sing 259 n n C4B C3B NAP sing 260 n n C4B H4B NAP sing 261 n n O4B C1B NAP sing 262 n n C3B O3B NAP sing 263 n n C3B C2B NAP sing 264 n n C3B H3B NAP sing 265 n n O3B HO3A NAP sing 266 n n C2B O2B NAP sing 267 n n C2B C1B NAP sing 268 n n C2B H2B NAP sing 269 n n O2B P2B NAP sing 270 n n C1B N9A NAP sing 271 n n C1B H1B NAP sing 272 n n N9A C8A NAP sing 273 n y N9A C4A NAP sing 274 n y C8A N7A NAP doub 275 n y C8A H8A NAP sing 276 n n N7A C5A NAP sing 277 n y C5A C6A NAP sing 278 n y C5A C4A NAP doub 279 n y C6A N6A NAP sing 280 n n C6A N1A NAP doub 281 n y N6A H61A NAP sing 282 n n N6A H62A NAP sing 283 n n N1A C2A NAP sing 284 n y C2A N3A NAP doub 285 n y C2A H2A NAP sing 286 n n N3A C4A NAP sing 287 n y O3 PN NAP sing 288 n n PN O1N NAP doub 289 n n PN O2N NAP sing 290 n n PN O5D NAP sing 291 n n O5D C5D NAP sing 292 n n C5D C4D NAP sing 293 n n C5D H51N NAP sing 294 n n C5D H52N NAP sing 295 n n C4D O4D NAP sing 296 n n C4D C3D NAP sing 297 n n C4D H4D NAP sing 298 n n O4D C1D NAP sing 299 n n C3D O3D NAP sing 300 n n C3D C2D NAP sing 301 n n C3D H3D NAP sing 302 n n O3D HO3N NAP sing 303 n n C2D O2D NAP sing 304 n n C2D C1D NAP sing 305 n n C2D H2D NAP sing 306 n n O2D HO2N NAP sing 307 n n C1D N1N NAP sing 308 n n C1D H1D NAP sing 309 n n N1N C2N NAP sing 310 n y N1N C6N NAP doub 311 n y C2N C3N NAP doub 312 n y C2N H2N NAP sing 313 n n C3N C7N NAP sing 314 n n C3N C4N NAP sing 315 n y C7N O7N NAP doub 316 n n C7N N7N NAP sing 317 n n N7N H71N NAP sing 318 n n N7N H72N NAP sing 319 n n C4N C5N NAP doub 320 n y C4N H4N NAP sing 321 n n C5N C6N NAP sing 322 n y C5N H5N NAP sing 323 n n C6N H6N NAP sing 324 n n P2B O1X NAP doub 325 n n P2B O2X NAP sing 326 n n P2B O3X NAP sing 327 n n O2X HOP2 NAP sing 328 n n O3X HOP3 NAP sing 329 n n # _atom_sites.entry_id 4J7X _atom_sites.fract_transf_matrix[1][1] 0.006703 _atom_sites.fract_transf_matrix[1][2] 0.00387 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005539 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 801 801 NAP NAP . F 3 SO4 A 1 802 1 SO4 SO4 . G 3 SO4 A 1 803 5 SO4 SO4 . H 3 SO4 A 1 804 7 SO4 SO4 . I 3 SO4 A 1 805 8 SO4 SO4 . J 4 SAS A 1 806 210 SAS SAS . K 5 PEG A 1 807 1 PEG PEG . L 2 NAP B 1 801 801 NAP NAP . M 3 SO4 B 1 802 2 SO4 SO4 . N 3 SO4 B 1 803 10 SO4 SO4 . O 4 SAS B 1 804 210 SAS SAS . P 3 SO4 B 1 805 1 SO4 SO4 . Q 5 PEG B 1 806 1 PEG PEG . R 2 NAP F 1 801 801 NAP NAP . S 3 SO4 F 1 802 3 SO4 SO4 . T 3 SO4 F 1 803 6 SO4 SO4 . U 6 GOL F 1 804 1 GOL GOL . V 4 SAS F 1 805 210 SAS SAS . W 5 PEG F 1 806 1 PEG PEG . X 5 PEG F 1 807 1 PEG PEG . Y 2 NAP J 1 801 801 NAP NAP . Z 3 SO4 J 1 802 4 SO4 SO4 . AA 6 GOL J 1 803 1 GOL GOL . BA 4 SAS J 1 804 210 SAS SAS . CA 5 PEG J 1 805 1 PEG PEG . DA 5 PEG J 1 806 1 PEG PEG . EA 7 HOH A 1 901 1 HOH HOH . EA 7 HOH A 2 902 5 HOH HOH . EA 7 HOH A 3 903 21 HOH HOH . EA 7 HOH A 4 904 26 HOH HOH . EA 7 HOH A 5 905 29 HOH HOH . EA 7 HOH A 6 906 33 HOH HOH . EA 7 HOH A 7 907 38 HOH HOH . EA 7 HOH A 8 908 46 HOH HOH . EA 7 HOH A 9 909 54 HOH HOH . EA 7 HOH A 10 910 73 HOH HOH . EA 7 HOH A 11 911 80 HOH HOH . EA 7 HOH A 12 912 127 HOH HOH . EA 7 HOH A 13 913 148 HOH HOH . EA 7 HOH A 14 914 155 HOH HOH . EA 7 HOH A 15 915 179 HOH HOH . EA 7 HOH A 16 916 182 HOH HOH . EA 7 HOH A 17 917 415 HOH HOH . EA 7 HOH A 18 918 427 HOH HOH . EA 7 HOH A 19 919 428 HOH HOH . EA 7 HOH A 20 920 430 HOH HOH . EA 7 HOH A 21 921 435 HOH HOH . EA 7 HOH A 22 922 451 HOH HOH . EA 7 HOH A 23 923 452 HOH HOH . EA 7 HOH A 24 924 453 HOH HOH . EA 7 HOH A 25 925 454 HOH HOH . EA 7 HOH A 26 926 464 HOH HOH . EA 7 HOH A 27 927 485 HOH HOH . EA 7 HOH A 28 928 486 HOH HOH . EA 7 HOH A 29 929 493 HOH HOH . EA 7 HOH A 30 930 494 HOH HOH . EA 7 HOH A 31 931 1 HOH HOH . EA 7 HOH A 32 932 2 HOH HOH . EA 7 HOH A 33 933 3 HOH HOH . FA 7 HOH B 1 901 11 HOH HOH . FA 7 HOH B 2 902 17 HOH HOH . FA 7 HOH B 3 903 20 HOH HOH . FA 7 HOH B 4 904 25 HOH HOH . FA 7 HOH B 5 905 27 HOH HOH . FA 7 HOH B 6 906 31 HOH HOH . FA 7 HOH B 7 907 43 HOH HOH . FA 7 HOH B 8 908 59 HOH HOH . FA 7 HOH B 9 909 66 HOH HOH . FA 7 HOH B 10 910 69 HOH HOH . FA 7 HOH B 11 911 75 HOH HOH . FA 7 HOH B 12 912 109 HOH HOH . FA 7 HOH B 13 913 111 HOH HOH . FA 7 HOH B 14 914 123 HOH HOH . FA 7 HOH B 15 915 146 HOH HOH . FA 7 HOH B 16 916 403 HOH HOH . FA 7 HOH B 17 917 426 HOH HOH . FA 7 HOH B 18 918 429 HOH HOH . FA 7 HOH B 19 919 433 HOH HOH . FA 7 HOH B 20 920 434 HOH HOH . FA 7 HOH B 21 921 446 HOH HOH . FA 7 HOH B 22 922 455 HOH HOH . FA 7 HOH B 23 923 460 HOH HOH . FA 7 HOH B 24 924 461 HOH HOH . FA 7 HOH B 25 925 479 HOH HOH . FA 7 HOH B 26 926 482 HOH HOH . FA 7 HOH B 27 927 488 HOH HOH . FA 7 HOH B 28 928 492 HOH HOH . FA 7 HOH B 29 929 66 HOH HOH . FA 7 HOH B 30 930 93 HOH HOH . FA 7 HOH B 31 931 131 HOH HOH . GA 7 HOH F 1 901 9 HOH HOH . GA 7 HOH F 2 902 16 HOH HOH . GA 7 HOH F 3 903 28 HOH HOH . GA 7 HOH F 4 904 30 HOH HOH . GA 7 HOH F 5 905 36 HOH HOH . GA 7 HOH F 6 906 42 HOH HOH . GA 7 HOH F 7 907 55 HOH HOH . GA 7 HOH F 8 908 56 HOH HOH . GA 7 HOH F 9 909 93 HOH HOH . GA 7 HOH F 10 910 264 HOH HOH . GA 7 HOH F 11 911 334 HOH HOH . GA 7 HOH F 12 912 338 HOH HOH . GA 7 HOH F 13 913 418 HOH HOH . GA 7 HOH F 14 914 423 HOH HOH . GA 7 HOH F 15 915 425 HOH HOH . GA 7 HOH F 16 916 437 HOH HOH . GA 7 HOH F 17 917 438 HOH HOH . GA 7 HOH F 18 918 440 HOH HOH . GA 7 HOH F 19 919 447 HOH HOH . GA 7 HOH F 20 920 450 HOH HOH . GA 7 HOH F 21 921 462 HOH HOH . GA 7 HOH F 22 922 484 HOH HOH . GA 7 HOH F 23 923 182 HOH HOH . GA 7 HOH F 24 924 224 HOH HOH . GA 7 HOH F 25 925 358 HOH HOH . HA 7 HOH J 1 901 14 HOH HOH . HA 7 HOH J 2 902 115 HOH HOH . HA 7 HOH J 3 903 125 HOH HOH . HA 7 HOH J 4 904 246 HOH HOH . HA 7 HOH J 5 905 416 HOH HOH . HA 7 HOH J 6 906 417 HOH HOH . HA 7 HOH J 7 907 424 HOH HOH . HA 7 HOH J 8 908 431 HOH HOH . HA 7 HOH J 9 909 458 HOH HOH . HA 7 HOH J 10 910 459 HOH HOH . HA 7 HOH J 11 911 489 HOH HOH . HA 7 HOH J 12 912 491 HOH HOH . HA 7 HOH J 13 913 82 HOH HOH . HA 7 HOH J 14 914 193 HOH HOH . HA 7 HOH J 15 915 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 2 -39.175 -49.225 12.65 1 30.8 ? PA NAP 801 A 1 HETATM 2 O O1A NAP . . . E 2 -39.621 -50.105 13.753 1 30.75 ? O1A NAP 801 A 1 HETATM 3 O O2A NAP . . . E 2 -40.172 -48.388 11.953 1 33 ? O2A NAP 801 A 1 HETATM 4 O O5B NAP . . . E 2 -38.449 -50.139 11.577 1 31.61 ? O5B NAP 801 A 1 HETATM 5 C C5B NAP . . . E 2 -37.996 -51.432 11.952 1 30.29 ? C5B NAP 801 A 1 HETATM 6 C C4B NAP . . . E 2 -37.532 -52.181 10.726 1 29.79 ? C4B NAP 801 A 1 HETATM 7 O O4B NAP . . . E 2 -36.62 -53.216 11.164 1 30.41 ? O4B NAP 801 A 1 HETATM 8 C C3B NAP . . . E 2 -38.773 -52.864 10.159 1 29.82 ? C3B NAP 801 A 1 HETATM 9 O O3B NAP . . . E 2 -38.678 -52.982 8.732 1 28.25 ? O3B NAP 801 A 1 HETATM 10 C C2B NAP . . . E 2 -38.712 -54.238 10.78 1 29.93 ? C2B NAP 801 A 1 HETATM 11 O O2B NAP . . . E 2 -39.352 -55.14 9.882 1 30.54 ? O2B NAP 801 A 1 HETATM 12 C C1B NAP . . . E 2 -37.195 -54.502 10.865 1 30.02 ? C1B NAP 801 A 1 HETATM 13 N N9A NAP . . . E 2 -36.965 -55.489 11.962 1 29.93 ? N9A NAP 801 A 1 HETATM 14 C C8A NAP . . . E 2 -37.254 -55.304 13.253 1 29.31 ? C8A NAP 801 A 1 HETATM 15 N N7A NAP . . . E 2 -36.939 -56.403 13.94 1 29.15 ? N7A NAP 801 A 1 HETATM 16 C C5A NAP . . . E 2 -36.454 -57.292 13.084 1 29.47 ? C5A NAP 801 A 1 HETATM 17 C C6A NAP . . . E 2 -35.977 -58.589 13.221 1 30.28 ? C6A NAP 801 A 1 HETATM 18 N N6A NAP . . . E 2 -35.953 -59.175 14.421 1 30.35 ? N6A NAP 801 A 1 HETATM 19 N N1A NAP . . . E 2 -35.543 -59.246 12.13 1 30.27 ? N1A NAP 801 A 1 HETATM 20 C C2A NAP . . . E 2 -35.567 -58.662 10.939 1 30.65 ? C2A NAP 801 A 1 HETATM 21 N N3A NAP . . . E 2 -36.022 -57.424 10.779 1 30.45 ? N3A NAP 801 A 1 HETATM 22 C C4A NAP . . . E 2 -36.468 -56.716 11.828 1 29.71 ? C4A NAP 801 A 1 HETATM 23 O O3 NAP . . . E 2 -37.978 -48.302 13.143 1 28.11 ? O3 NAP 801 A 1 HETATM 24 P PN NAP . . . E 2 -37.248 -47.205 12.231 1 27.59 ? PN NAP 801 A 1 HETATM 25 O O1N NAP . . . E 2 -37.334 -45.89 12.914 1 27.47 ? O1N NAP 801 A 1 HETATM 26 O O2N NAP . . . E 2 -37.642 -47.319 10.813 1 26.89 ? O2N NAP 801 A 1 HETATM 27 O O5D NAP . . . E 2 -35.748 -47.717 12.451 1 27.5 ? O5D NAP 801 A 1 HETATM 28 C C5D NAP . . . E 2 -34.804 -47.879 11.405 1 26.34 ? C5D NAP 801 A 1 HETATM 29 C C4D NAP . . . E 2 -33.395 -47.644 11.943 1 25.86 ? C4D NAP 801 A 1 HETATM 30 O O4D NAP . . . E 2 -33.264 -46.236 12.236 1 25.52 ? O4D NAP 801 A 1 HETATM 31 C C3D NAP . . . E 2 -33.13 -48.402 13.257 1 25.34 ? C3D NAP 801 A 1 HETATM 32 O O3D NAP . . . E 2 -31.801 -48.923 13.224 1 25.59 ? O3D NAP 801 A 1 HETATM 33 C C2D NAP . . . E 2 -33.236 -47.32 14.313 1 25.15 ? C2D NAP 801 A 1 HETATM 34 O O2D NAP . . . E 2 -32.424 -47.624 15.448 1 24.6 ? O2D NAP 801 A 1 HETATM 35 C C1D NAP . . . E 2 -32.671 -46.136 13.553 1 25.21 ? C1D NAP 801 A 1 HETATM 36 N N1N NAP . . . E 2 -33.15 -44.863 14.105 1 25.16 ? N1N NAP 801 A 1 HETATM 37 C C2N NAP . . . E 2 -34.523 -44.57 14.155 1 25.32 ? C2N NAP 801 A 1 HETATM 38 C C3N NAP . . . E 2 -34.926 -43.341 14.679 1 25.85 ? C3N NAP 801 A 1 HETATM 39 C C7N NAP . . . E 2 -36.397 -42.946 14.778 1 25.41 ? C7N NAP 801 A 1 HETATM 40 O O7N NAP . . . E 2 -36.723 -41.788 15.389 1 25.67 ? O7N NAP 801 A 1 HETATM 41 N N7N NAP . . . E 2 -37.317 -43.774 14.272 1 25.28 ? N7N NAP 801 A 1 HETATM 42 C C4N NAP . . . E 2 -33.974 -42.431 15.135 1 26.25 ? C4N NAP 801 A 1 HETATM 43 C C5N NAP . . . E 2 -32.613 -42.72 15.083 1 25.64 ? C5N NAP 801 A 1 HETATM 44 C C6N NAP . . . E 2 -32.205 -43.94 14.567 1 25.34 ? C6N NAP 801 A 1 HETATM 45 P P2B NAP . . . E 2 -40.195 -56.393 10.425 1 31.53 ? P2B NAP 801 A 1 HETATM 46 O O1X NAP . . . E 2 -40.927 -55.895 11.766 1 32.13 ? O1X NAP 801 A 1 HETATM 47 O O2X NAP . . . E 2 -41.36 -56.618 9.33 1 33 ? O2X NAP 801 A 1 HETATM 48 O O3X NAP . . . E 2 -39.386 -57.6 10.664 1 32.83 ? O3X NAP 801 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #