data_4J7Y # _model_server_result.job_id 7qGtonO_7iemk25whjL6Pg _model_server_result.datetime_utc '2024-11-25 10:45:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j7y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4J7Y # _exptl.entry_id 4J7Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 453.509 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-gamma-glutamyl-(Z)-N-(carboxymethylidene)-S-[(2R)-2-hydroxy-4-phenylbutyl]-L-cysteinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J7Y _cell.length_a 169.275 _cell.length_b 169.275 _cell.length_c 169.275 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J7Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA dodecameric 12 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2,3 A,B,C,D 2 1,4,5,6,7,8,9,2,10,3,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 24_544 -y,-z-1/2,x-1/2 0 -1 0 0 0 -1 1 0 0 0 -84.6375 -84.6375 3 'crystal symmetry operation' 30_554 z+1/2,-x,-y-1/2 0 0 1 -1 0 0 0 -1 0 84.6375 0 -84.6375 4 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 3_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 0 0 -169.275 6 'crystal symmetry operation' 4_554 x,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -169.275 7 'crystal symmetry operation' 21_554 y,z+1/2,x-1/2 0 1 0 0 0 1 1 0 0 0 84.6375 -84.6375 8 'crystal symmetry operation' 22_554 -y,z+1/2,-x-1/2 0 -1 0 0 0 1 -1 0 0 0 84.6375 -84.6375 9 'crystal symmetry operation' 23_544 y,-z-1/2,-x-1/2 0 1 0 0 0 -1 -1 0 0 0 -84.6375 -84.6375 10 'crystal symmetry operation' 29_554 z+1/2,x,y-1/2 0 0 1 1 0 0 0 1 0 84.6375 0 -84.6375 11 'crystal symmetry operation' 31_454 -z-1/2,-x,y-1/2 0 0 -1 -1 0 0 0 1 0 -84.6375 0 -84.6375 12 'crystal symmetry operation' 32_454 -z-1/2,x,-y-1/2 0 0 -1 1 0 0 0 -1 0 -84.6375 0 -84.6375 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 7 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id NI _struct_conn.ptnr2_label_comp_id NI _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NI _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.251 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H27 N3 O7 S' _chem_comp.formula_weight 453.509 _chem_comp.id 1JP _chem_comp.mon_nstd_flag . _chem_comp.name D-gamma-glutamyl-(Z)-N-(carboxymethylidene)-S-[(2R)-2-hydroxy-4-phenylbutyl]-L-cysteinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 1JP sing 1 n n CA CB 1JP sing 2 n n CA C 1JP sing 3 n n O C 1JP doub 4 n n CB CG 1JP sing 5 n n C OXT 1JP sing 6 n n CG CD 1JP sing 7 n n CD OE1 1JP doub 8 n n CD NE2 1JP sing 9 n n NE2 CBE 1JP sing 10 n n OAB CAX 1JP doub 11 n n OAE CBA 1JP doub 12 n n CBE CBA 1JP sing 13 n n CBE CAT 1JP sing 14 n n CBA NAU 1JP sing 15 n n CAX CAO 1JP sing 16 n n CAX OAF 1JP sing 17 n n NAU CAO 1JP doub 18 n n CAT S1 1JP sing 19 n n S1 CAS 1JP sing 20 n n OAH CBD 1JP sing 21 n n CAL CAJ 1JP doub 22 n y CAL CBB 1JP sing 23 n y CAP CBB 1JP sing 24 n n CAP CAR 1JP sing 25 n n CAS CBD 1JP sing 26 n n CAJ CAI 1JP sing 27 n y CBB CAM 1JP doub 28 n y CBD CAR 1JP sing 29 n n CAI CAK 1JP doub 30 n y CAM CAK 1JP sing 31 n y OXT H1 1JP sing 32 n n CA H2 1JP sing 33 n n N H3 1JP sing 34 n n N H4 1JP sing 35 n n CB H6 1JP sing 36 n n CB H7 1JP sing 37 n n CG H8 1JP sing 38 n n CG H9 1JP sing 39 n n NE2 H10 1JP sing 40 n n CBE H11 1JP sing 41 n n CAO H12 1JP sing 42 n n OAF H13 1JP sing 43 n n CAT H14 1JP sing 44 n n CAT H15 1JP sing 45 n n CAS H16 1JP sing 46 n n CAS H17 1JP sing 47 n n CBD H18 1JP sing 48 n n OAH H19 1JP sing 49 n n CAR H20 1JP sing 50 n n CAR H21 1JP sing 51 n n CAP H22 1JP sing 52 n n CAP H23 1JP sing 53 n n CAL H24 1JP sing 54 n n CAJ H25 1JP sing 55 n n CAI H26 1JP sing 56 n n CAK H27 1JP sing 57 n n CAM H28 1JP sing 58 n n # _atom_sites.entry_id 4J7Y _atom_sites.fract_transf_matrix[1][1] 0.005908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005908 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 201 1151 NI NI . C 3 SO4 A 1 202 1164 SO4 SO4 . D 4 1JP A 1 203 1 1JP DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 1JP . . . D 4 12.992 -4.34 -66.048 1 96.56 ? O 1JP 203 A 1 HETATM 2 C C 1JP . . . D 4 14.183 -4.45 -65.646 1 97.46 ? C 1JP 203 A 1 HETATM 3 O OXT 1JP . . . D 4 14.516 -4.033 -64.512 1 91.87 -1 OXT 1JP 203 A 1 HETATM 4 C CA 1JP . . . D 4 15.176 -5.127 -66.531 1 101.58 ? CA 1JP 203 A 1 HETATM 5 N N 1JP . . . D 4 14.456 -6.077 -67.344 1 94.33 ? N 1JP 203 A 1 HETATM 6 C CB 1JP . . . D 4 16.214 -5.903 -65.785 1 80.57 ? CB 1JP 203 A 1 HETATM 7 C CG 1JP . . . D 4 17.077 -5.234 -64.777 1 61.03 ? CG 1JP 203 A 1 HETATM 8 C CD 1JP . . . D 4 16.865 -5.742 -63.387 1 59.83 ? CD 1JP 203 A 1 HETATM 9 O OE1 1JP . . . D 4 16.424 -6.878 -63.254 1 63.36 ? OE1 1JP 203 A 1 HETATM 10 N NE2 1JP . . . D 4 17.155 -4.938 -62.243 1 53.66 ? NE2 1JP 203 A 1 HETATM 11 C CBE 1JP . . . D 4 16.9 -5.487 -60.947 1 57.58 ? CBE 1JP 203 A 1 HETATM 12 C CBA 1JP . . . D 4 15.437 -5.675 -60.855 1 66.16 ? CBA 1JP 203 A 1 HETATM 13 O OAE 1JP . . . D 4 14.727 -4.786 -61.301 1 77.97 ? OAE 1JP 203 A 1 HETATM 14 N NAU 1JP . . . D 4 14.921 -6.887 -60.277 1 61.71 ? NAU 1JP 203 A 1 HETATM 15 C CAO 1JP . . . D 4 13.528 -7.186 -60.138 1 75.18 ? CAO 1JP 203 A 1 HETATM 16 C CAX 1JP . . . D 4 12.493 -6.292 -60.729 1 71.36 ? CAX 1JP 203 A 1 HETATM 17 O OAF 1JP . . . D 4 11.533 -5.874 -60.035 1 64.24 ? OAF 1JP 203 A 1 HETATM 18 O OAB 1JP . . . D 4 12.602 -5.935 -61.93 1 81.17 -1 OAB 1JP 203 A 1 HETATM 19 C CAT 1JP . . . D 4 17.273 -4.586 -59.821 1 52.41 ? CAT 1JP 203 A 1 HETATM 20 S S1 1JP . . . D 4 18.961 -4.125 -59.563 1 75.14 ? S1 1JP 203 A 1 HETATM 21 C CAS 1JP . . . D 4 19.248 -4.004 -57.831 1 71.06 ? CAS 1JP 203 A 1 HETATM 22 C CBD 1JP . . . D 4 20.475 -4.676 -57.34 1 83.73 ? CBD 1JP 203 A 1 HETATM 23 O OAH 1JP . . . D 4 21.424 -4.619 -58.342 1 85.9 ? OAH 1JP 203 A 1 HETATM 24 C CAR 1JP . . . D 4 20.164 -6.105 -57.048 1 65.05 ? CAR 1JP 203 A 1 HETATM 25 C CAP 1JP . . . D 4 20.697 -7.14 -57.973 1 68.37 ? CAP 1JP 203 A 1 HETATM 26 C CBB 1JP . . . D 4 21.76 -8.046 -57.445 1 69.94 ? CBB 1JP 203 A 1 HETATM 27 C CAL 1JP . . . D 4 22.373 -8.969 -58.274 1 59.13 ? CAL 1JP 203 A 1 HETATM 28 C CAJ 1JP . . . D 4 23.361 -9.801 -57.759 1 59.75 ? CAJ 1JP 203 A 1 HETATM 29 C CAI 1JP . . . D 4 23.727 -9.709 -56.424 1 68.24 ? CAI 1JP 203 A 1 HETATM 30 C CAK 1JP . . . D 4 23.107 -8.782 -55.598 1 62.49 ? CAK 1JP 203 A 1 HETATM 31 C CAM 1JP . . . D 4 22.118 -7.953 -56.112 1 74.87 ? CAM 1JP 203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #