data_4J83 # _model_server_result.job_id nT7NF_VRvQzRWVRCG-YYNw _model_server_result.datetime_utc '2024-11-23 12:28:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j83 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4J83 # _exptl.entry_id 4J83 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4J83 _cell.length_a 83.475 _cell.length_b 83.475 _cell.length_c 95.785 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J83 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -31.928333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 283 n n N HN1 SAM sing 284 n n N HN2 SAM sing 285 n n CA C SAM sing 286 n n CA CB SAM sing 287 n n CA HA SAM sing 288 n n C O SAM doub 289 n n C OXT SAM sing 290 n n CB CG SAM sing 291 n n CB HB1 SAM sing 292 n n CB HB2 SAM sing 293 n n CG SD SAM sing 294 n n CG HG1 SAM sing 295 n n CG HG2 SAM sing 296 n n SD CE SAM sing 297 n n SD C5' SAM sing 298 n n CE HE1 SAM sing 299 n n CE HE2 SAM sing 300 n n CE HE3 SAM sing 301 n n C5' C4' SAM sing 302 n n C5' "H5'1" SAM sing 303 n n C5' "H5'2" SAM sing 304 n n C4' O4' SAM sing 305 n n C4' C3' SAM sing 306 n n C4' H4' SAM sing 307 n n O4' C1' SAM sing 308 n n C3' O3' SAM sing 309 n n C3' C2' SAM sing 310 n n C3' H3' SAM sing 311 n n O3' HO3' SAM sing 312 n n C2' O2' SAM sing 313 n n C2' C1' SAM sing 314 n n C2' H2' SAM sing 315 n n O2' HO2' SAM sing 316 n n C1' N9 SAM sing 317 n n C1' H1' SAM sing 318 n n N9 C8 SAM sing 319 n y N9 C4 SAM sing 320 n y C8 N7 SAM doub 321 n y C8 H8 SAM sing 322 n n N7 C5 SAM sing 323 n y C5 C6 SAM sing 324 n y C5 C4 SAM doub 325 n y C6 N6 SAM sing 326 n n C6 N1 SAM doub 327 n y N6 HN61 SAM sing 328 n n N6 HN62 SAM sing 329 n n N1 C2 SAM sing 330 n y C2 N3 SAM doub 331 n y C2 H2 SAM sing 332 n n N3 C4 SAM sing 333 n y # _atom_sites.entry_id 4J83 _atom_sites.fract_transf_matrix[1][1] 0.01198 _atom_sites.fract_transf_matrix[1][2] 0.006916 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAM A 1 401 402 SAM SAM . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 5 HOH HOH . D 4 HOH A 4 504 6 HOH HOH . D 4 HOH A 5 505 7 HOH HOH . D 4 HOH A 6 506 8 HOH HOH . D 4 HOH A 7 507 1 HOH HOH . D 4 HOH A 8 508 2 HOH HOH . D 4 HOH A 9 509 3 HOH HOH . D 4 HOH A 10 510 4 HOH HOH . D 4 HOH A 11 511 6 HOH HOH . D 4 HOH A 12 512 7 HOH HOH . D 4 HOH A 13 513 8 HOH HOH . D 4 HOH A 14 514 9 HOH HOH . D 4 HOH A 15 515 10 HOH HOH . D 4 HOH A 16 516 11 HOH HOH . D 4 HOH A 17 517 12 HOH HOH . D 4 HOH A 18 518 14 HOH HOH . D 4 HOH A 19 519 15 HOH HOH . D 4 HOH A 20 520 16 HOH HOH . D 4 HOH A 21 521 17 HOH HOH . D 4 HOH A 22 522 19 HOH HOH . D 4 HOH A 23 523 20 HOH HOH . D 4 HOH A 24 524 21 HOH HOH . D 4 HOH A 25 525 22 HOH HOH . D 4 HOH A 26 526 23 HOH HOH . D 4 HOH A 27 527 24 HOH HOH . D 4 HOH A 28 528 25 HOH HOH . D 4 HOH A 29 529 26 HOH HOH . D 4 HOH A 30 530 27 HOH HOH . D 4 HOH A 31 531 28 HOH HOH . D 4 HOH A 32 532 29 HOH HOH . D 4 HOH A 33 533 30 HOH HOH . D 4 HOH A 34 534 31 HOH HOH . D 4 HOH A 35 535 32 HOH HOH . D 4 HOH A 36 536 33 HOH HOH . D 4 HOH A 37 537 34 HOH HOH . D 4 HOH A 38 538 35 HOH HOH . D 4 HOH A 39 539 36 HOH HOH . D 4 HOH A 40 540 37 HOH HOH . D 4 HOH A 41 541 38 HOH HOH . D 4 HOH A 42 542 39 HOH HOH . D 4 HOH A 43 543 40 HOH HOH . D 4 HOH A 44 544 41 HOH HOH . D 4 HOH A 45 545 42 HOH HOH . D 4 HOH A 46 546 43 HOH HOH . D 4 HOH A 47 547 44 HOH HOH . D 4 HOH A 48 548 45 HOH HOH . D 4 HOH A 49 549 46 HOH HOH . D 4 HOH A 50 550 47 HOH HOH . D 4 HOH A 51 551 48 HOH HOH . D 4 HOH A 52 552 49 HOH HOH . D 4 HOH A 53 553 50 HOH HOH . D 4 HOH A 54 554 51 HOH HOH . D 4 HOH A 55 555 52 HOH HOH . D 4 HOH A 56 556 53 HOH HOH . D 4 HOH A 57 557 54 HOH HOH . D 4 HOH A 58 558 55 HOH HOH . D 4 HOH A 59 559 56 HOH HOH . D 4 HOH A 60 560 57 HOH HOH . D 4 HOH A 61 561 58 HOH HOH . D 4 HOH A 62 562 59 HOH HOH . D 4 HOH A 63 563 60 HOH HOH . D 4 HOH A 64 564 61 HOH HOH . D 4 HOH A 65 565 62 HOH HOH . D 4 HOH A 66 566 63 HOH HOH . D 4 HOH A 67 567 64 HOH HOH . D 4 HOH A 68 568 65 HOH HOH . D 4 HOH A 69 569 66 HOH HOH . D 4 HOH A 70 570 67 HOH HOH . D 4 HOH A 71 571 69 HOH HOH . D 4 HOH A 72 572 70 HOH HOH . D 4 HOH A 73 573 71 HOH HOH . D 4 HOH A 74 574 72 HOH HOH . D 4 HOH A 75 575 74 HOH HOH . D 4 HOH A 76 576 75 HOH HOH . D 4 HOH A 77 577 76 HOH HOH . D 4 HOH A 78 578 77 HOH HOH . D 4 HOH A 79 579 78 HOH HOH . D 4 HOH A 80 580 80 HOH HOH . D 4 HOH A 81 581 81 HOH HOH . D 4 HOH A 82 582 82 HOH HOH . D 4 HOH A 83 583 83 HOH HOH . D 4 HOH A 84 584 84 HOH HOH . D 4 HOH A 85 585 85 HOH HOH . D 4 HOH A 86 586 86 HOH HOH . D 4 HOH A 87 587 87 HOH HOH . D 4 HOH A 88 588 88 HOH HOH . D 4 HOH A 89 589 89 HOH HOH . D 4 HOH A 90 590 90 HOH HOH . D 4 HOH A 91 591 91 HOH HOH . D 4 HOH A 92 592 92 HOH HOH . D 4 HOH A 93 593 93 HOH HOH . D 4 HOH A 94 594 94 HOH HOH . D 4 HOH A 95 595 95 HOH HOH . D 4 HOH A 96 596 96 HOH HOH . D 4 HOH A 97 597 97 HOH HOH . D 4 HOH A 98 598 98 HOH HOH . D 4 HOH A 99 599 100 HOH HOH . D 4 HOH A 100 600 101 HOH HOH . D 4 HOH A 101 601 4 HOH HOH . D 4 HOH A 102 602 6 HOH HOH . D 4 HOH A 103 603 7 HOH HOH . D 4 HOH A 104 604 9 HOH HOH . D 4 HOH A 105 605 11 HOH HOH . D 4 HOH A 106 606 14 HOH HOH . D 4 HOH A 107 607 15 HOH HOH . D 4 HOH A 108 608 16 HOH HOH . D 4 HOH A 109 609 17 HOH HOH . D 4 HOH A 110 610 18 HOH HOH . D 4 HOH A 111 611 20 HOH HOH . D 4 HOH A 112 612 21 HOH HOH . D 4 HOH A 113 613 1 HOH HOH . D 4 HOH A 114 614 2 HOH HOH . D 4 HOH A 115 615 1 HOH HOH . D 4 HOH A 116 616 4 HOH HOH . D 4 HOH A 117 617 7 HOH HOH . D 4 HOH A 118 618 8 HOH HOH . D 4 HOH A 119 619 9 HOH HOH . D 4 HOH A 120 620 10 HOH HOH . D 4 HOH A 121 621 11 HOH HOH . D 4 HOH A 122 622 12 HOH HOH . D 4 HOH A 123 623 1 HOH HOH . D 4 HOH A 124 624 2 HOH HOH . D 4 HOH A 125 625 6 HOH HOH . D 4 HOH A 126 626 9 HOH HOH . D 4 HOH A 127 627 10 HOH HOH . D 4 HOH A 128 628 15 HOH HOH . D 4 HOH A 129 629 17 HOH HOH . D 4 HOH A 130 630 18 HOH HOH . D 4 HOH A 131 631 19 HOH HOH . D 4 HOH A 132 632 21 HOH HOH . D 4 HOH A 133 633 22 HOH HOH . D 4 HOH A 134 634 1 HOH HOH . D 4 HOH A 135 635 2 HOH HOH . D 4 HOH A 136 636 3 HOH HOH . D 4 HOH A 137 637 5 HOH HOH . D 4 HOH A 138 638 8 HOH HOH . D 4 HOH A 139 639 11 HOH HOH . D 4 HOH A 140 640 16 HOH HOH . D 4 HOH A 141 641 18 HOH HOH . D 4 HOH A 142 642 19 HOH HOH . D 4 HOH A 143 643 1 HOH HOH . D 4 HOH A 144 644 2 HOH HOH . D 4 HOH A 145 645 4 HOH HOH . E 4 HOH B 1 201 5 HOH HOH . E 4 HOH B 2 202 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 54.012 -20.111 -6.685 1 27.92 ? N SAM 401 A 1 HETATM 2 C CA SAM . . . C 3 52.903 -19.335 -6.127 1 31.67 ? CA SAM 401 A 1 HETATM 3 C C SAM . . . C 3 52.867 -19.42 -4.609 1 31.33 ? C SAM 401 A 1 HETATM 4 O O SAM . . . C 3 53.753 -20.077 -4.008 1 27.26 ? O SAM 401 A 1 HETATM 5 O OXT SAM . . . C 3 51.906 -18.878 -3.972 1 27.43 ? OXT SAM 401 A 1 HETATM 6 C CB SAM . . . C 3 51.562 -19.784 -6.769 1 26.52 ? CB SAM 401 A 1 HETATM 7 C CG SAM . . . C 3 51.305 -19.08 -8.107 1 25.25 ? CG SAM 401 A 1 HETATM 8 S SD SAM . . . C 3 50.92 -17.421 -7.979 1 26.46 ? SD SAM 401 A 1 HETATM 9 C CE SAM . . . C 3 49.528 -17.178 -8.904 1 32.99 ? CE SAM 401 A 1 HETATM 10 C C5' SAM . . . C 3 52.007 -16.539 -8.94 1 30.51 ? C5' SAM 401 A 1 HETATM 11 C C4' SAM . . . C 3 53.498 -16.552 -8.549 1 31.08 ? C4' SAM 401 A 1 HETATM 12 O O4' SAM . . . C 3 54.1 -17.827 -8.696 1 27.67 ? O4' SAM 401 A 1 HETATM 13 C C3' SAM . . . C 3 54.355 -15.64 -9.433 1 32.97 ? C3' SAM 401 A 1 HETATM 14 O O3' SAM . . . C 3 54.346 -14.325 -8.886 1 35.96 ? O3' SAM 401 A 1 HETATM 15 C C2' SAM . . . C 3 55.742 -16.267 -9.426 1 35.79 ? C2' SAM 401 A 1 HETATM 16 O O2' SAM . . . C 3 56.428 -15.96 -8.203 1 38.48 ? O2' SAM 401 A 1 HETATM 17 C C1' SAM . . . C 3 55.418 -17.73 -9.268 1 34.74 ? C1' SAM 401 A 1 HETATM 18 N N9 SAM . . . C 3 55.469 -18.472 -10.546 1 31.41 ? N9 SAM 401 A 1 HETATM 19 C C8 SAM . . . C 3 54.415 -18.968 -11.224 1 32.39 ? C8 SAM 401 A 1 HETATM 20 N N7 SAM . . . C 3 54.828 -19.663 -12.323 1 29.63 ? N7 SAM 401 A 1 HETATM 21 C C5 SAM . . . C 3 56.183 -19.608 -12.336 1 33.29 ? C5 SAM 401 A 1 HETATM 22 C C6 SAM . . . C 3 57.24 -20.128 -13.229 1 32.9 ? C6 SAM 401 A 1 HETATM 23 N N6 SAM . . . C 3 56.928 -20.85 -14.341 1 32.11 ? N6 SAM 401 A 1 HETATM 24 N N1 SAM . . . C 3 58.526 -19.831 -12.9 1 32.81 ? N1 SAM 401 A 1 HETATM 25 C C2 SAM . . . C 3 58.834 -19.129 -11.79 1 34.38 ? C2 SAM 401 A 1 HETATM 26 N N3 SAM . . . C 3 57.926 -18.597 -10.947 1 33.92 ? N3 SAM 401 A 1 HETATM 27 C C4 SAM . . . C 3 56.594 -18.829 -11.173 1 34.71 ? C4 SAM 401 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 27 #