data_4J8T
#
_model_server_result.job_id            9AdJQ0ReIrw-hOvGu-wiZg 
_model_server_result.datetime_utc      '2024-11-15 08:01:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j8t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    4J8T 
#
_exptl.entry_id    4J8T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              390.513 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DIGOXIGENIN 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4J8T 
_cell.length_a            74.368 
_cell.length_b            74.368 
_cell.length_c            161.097 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J8T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
PISA tetrameric 4 software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
D,H,L 5 2 
C,G,K 5 3 
A,B,E,F,I,J 5 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_445 -x-1,-y-1,z+1/2 -1 0 0 0 -1 0 0 0 1 -37.184 -64.404577 80.5485 
3 'crystal symmetry operation' 5_545 y,-x+y-1,z+1/6 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 37.184 -64.404577 26.8495 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C23 H34 O5' 
_chem_comp.formula_weight    390.513 
_chem_comp.id                DOG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DIGOXIGENIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     4-(3,12,14-TRIHYDROXY-10,13-DIMETHYL-HEXADECAHYDRO-CYCLOPENTA[A]PHENANTHREN-17-YL)-5H-FURAN-2-ONE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O23 C23 DOG doub 83 n n 
C23 C22 DOG sing 84 n n 
C23 O21 DOG sing 85 n n 
C22 C20 DOG doub 86 n n 
C22 H22 DOG sing 87 n n 
O21 C21 DOG sing 88 n n 
C21 C20 DOG sing 89 n n 
C21 H211 DOG sing 90 n n 
C21 H212 DOG sing 91 n n 
C20 C17 DOG sing 92 n n 
C17 C16 DOG sing 93 n n 
C17 C13 DOG sing 94 n n 
C17 H17 DOG sing 95 n n 
C16 C15 DOG sing 96 n n 
C16 H161 DOG sing 97 n n 
C16 H162 DOG sing 98 n n 
C13 C18 DOG sing 99 n n 
C13 C12 DOG sing 100 n n 
C13 C14 DOG sing 101 n n 
C18 H181 DOG sing 102 n n 
C18 H182 DOG sing 103 n n 
C18 H183 DOG sing 104 n n 
C12 O12 DOG sing 105 n n 
C12 C11 DOG sing 106 n n 
C12 H12 DOG sing 107 n n 
O12 H12O DOG sing 108 n n 
C14 C15 DOG sing 109 n n 
C14 O14 DOG sing 110 n n 
C14 C8 DOG sing 111 n n 
C15 H151 DOG sing 112 n n 
C15 H152 DOG sing 113 n n 
O14 H14O DOG sing 114 n n 
C8 C7 DOG sing 115 n n 
C8 C9 DOG sing 116 n n 
C8 HC8 DOG sing 117 n n 
C7 C6 DOG sing 118 n n 
C7 HC71 DOG sing 119 n n 
C7 HC72 DOG sing 120 n n 
C9 C11 DOG sing 121 n n 
C9 C10 DOG sing 122 n n 
C9 HC9 DOG sing 123 n n 
C11 H111 DOG sing 124 n n 
C11 H112 DOG sing 125 n n 
C10 C19 DOG sing 126 n n 
C10 C5 DOG sing 127 n n 
C10 C1 DOG sing 128 n n 
C19 H191 DOG sing 129 n n 
C19 H192 DOG sing 130 n n 
C19 H193 DOG sing 131 n n 
C5 C6 DOG sing 132 n n 
C5 C4 DOG sing 133 n n 
C5 HC5 DOG sing 134 n n 
C6 HC61 DOG sing 135 n n 
C6 HC62 DOG sing 136 n n 
C4 C3 DOG sing 137 n n 
C4 HC41 DOG sing 138 n n 
C4 HC42 DOG sing 139 n n 
C3 O32 DOG sing 140 n n 
C3 C2 DOG sing 141 n n 
C3 HC3 DOG sing 142 n n 
O32 H32O DOG sing 143 n n 
C2 C1 DOG sing 144 n n 
C2 HC21 DOG sing 145 n n 
C2 HC22 DOG sing 146 n n 
C1 HC11 DOG sing 147 n n 
C1 HC12 DOG sing 148 n n 
#
_atom_sites.entry_id                     4J8T 
_atom_sites.fract_transf_matrix[1][1]    0.013447 
_atom_sites.fract_transf_matrix[1][2]    0.007763 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015527 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006207 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 DOG A 1 201 201 DOG DOG . 
F 2 DOG B 1 201 201 DOG DOG . 
G 2 DOG C 1 201 201 DOG DOG . 
H 2 DOG D 1 201 201 DOG DOG . 
I 3 HOH A 1 301 301 HOH HOH . 
I 3 HOH A 2 302 302 HOH HOH . 
I 3 HOH A 3 303 303 HOH HOH . 
I 3 HOH A 4 304 304 HOH HOH . 
I 3 HOH A 5 305 305 HOH HOH . 
I 3 HOH A 6 306 307 HOH HOH . 
I 3 HOH A 7 307 308 HOH HOH . 
I 3 HOH A 8 308 309 HOH HOH . 
I 3 HOH A 9 309 310 HOH HOH . 
I 3 HOH A 10 310 311 HOH HOH . 
I 3 HOH A 11 311 312 HOH HOH . 
I 3 HOH A 12 312 313 HOH HOH . 
I 3 HOH A 13 313 314 HOH HOH . 
I 3 HOH A 14 314 315 HOH HOH . 
I 3 HOH A 15 315 316 HOH HOH . 
I 3 HOH A 16 316 317 HOH HOH . 
I 3 HOH A 17 317 318 HOH HOH . 
I 3 HOH A 18 318 319 HOH HOH . 
I 3 HOH A 19 319 320 HOH HOH . 
I 3 HOH A 20 320 321 HOH HOH . 
I 3 HOH A 21 321 311 HOH HOH . 
I 3 HOH A 22 322 317 HOH HOH . 
J 3 HOH B 1 301 301 HOH HOH . 
J 3 HOH B 2 302 302 HOH HOH . 
J 3 HOH B 3 303 303 HOH HOH . 
J 3 HOH B 4 304 304 HOH HOH . 
J 3 HOH B 5 305 305 HOH HOH . 
J 3 HOH B 6 306 306 HOH HOH . 
J 3 HOH B 7 307 307 HOH HOH . 
J 3 HOH B 8 308 308 HOH HOH . 
J 3 HOH B 9 309 309 HOH HOH . 
J 3 HOH B 10 310 310 HOH HOH . 
J 3 HOH B 11 311 312 HOH HOH . 
J 3 HOH B 12 312 313 HOH HOH . 
J 3 HOH B 13 313 314 HOH HOH . 
J 3 HOH B 14 314 315 HOH HOH . 
J 3 HOH B 15 315 316 HOH HOH . 
J 3 HOH B 16 316 317 HOH HOH . 
J 3 HOH B 17 317 318 HOH HOH . 
J 3 HOH B 18 318 319 HOH HOH . 
J 3 HOH B 19 319 320 HOH HOH . 
J 3 HOH B 20 320 321 HOH HOH . 
J 3 HOH B 21 321 322 HOH HOH . 
J 3 HOH B 22 322 323 HOH HOH . 
K 3 HOH C 1 301 306 HOH HOH . 
K 3 HOH C 2 302 301 HOH HOH . 
K 3 HOH C 3 303 302 HOH HOH . 
K 3 HOH C 4 304 303 HOH HOH . 
K 3 HOH C 5 305 304 HOH HOH . 
K 3 HOH C 6 306 305 HOH HOH . 
K 3 HOH C 7 307 306 HOH HOH . 
K 3 HOH C 8 308 307 HOH HOH . 
K 3 HOH C 9 309 308 HOH HOH . 
K 3 HOH C 10 310 309 HOH HOH . 
K 3 HOH C 11 311 310 HOH HOH . 
K 3 HOH C 12 312 311 HOH HOH . 
K 3 HOH C 13 313 312 HOH HOH . 
K 3 HOH C 14 314 313 HOH HOH . 
K 3 HOH C 15 315 314 HOH HOH . 
K 3 HOH C 16 316 315 HOH HOH . 
K 3 HOH C 17 317 316 HOH HOH . 
K 3 HOH C 18 318 317 HOH HOH . 
K 3 HOH C 19 319 318 HOH HOH . 
K 3 HOH C 20 320 319 HOH HOH . 
K 3 HOH C 21 321 320 HOH HOH . 
K 3 HOH C 22 322 321 HOH HOH . 
K 3 HOH C 23 323 322 HOH HOH . 
K 3 HOH C 24 324 323 HOH HOH . 
L 3 HOH D 1 301 301 HOH HOH . 
L 3 HOH D 2 302 302 HOH HOH . 
L 3 HOH D 3 303 303 HOH HOH . 
L 3 HOH D 4 304 304 HOH HOH . 
L 3 HOH D 5 305 305 HOH HOH . 
L 3 HOH D 6 306 306 HOH HOH . 
L 3 HOH D 7 307 307 HOH HOH . 
L 3 HOH D 8 308 308 HOH HOH . 
L 3 HOH D 9 309 309 HOH HOH . 
L 3 HOH D 10 310 310 HOH HOH . 
L 3 HOH D 11 311 311 HOH HOH . 
L 3 HOH D 12 312 312 HOH HOH . 
L 3 HOH D 13 313 313 HOH HOH . 
L 3 HOH D 14 314 314 HOH HOH . 
L 3 HOH D 15 315 315 HOH HOH . 
L 3 HOH D 16 316 316 HOH HOH . 
L 3 HOH D 17 317 318 HOH HOH . 
L 3 HOH D 18 318 319 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O23 DOG . . . E 2 -12.024 -30.551 9.619 1 27.23 ? O23 DOG 201 A 1 
HETATM 2 C C23 DOG . . . E 2 -11.726 -31.709 9.527 1 25.16 ? C23 DOG 201 A 1 
HETATM 3 C C22 DOG . . . E 2 -12.298 -32.833 10.197 1 23.7 ? C22 DOG 201 A 1 
HETATM 4 O O21 DOG . . . E 2 -11.027 -32.086 8.549 1 20.08 ? O21 DOG 201 A 1 
HETATM 5 C C21 DOG . . . E 2 -10.814 -33.365 8.667 1 21.45 ? C21 DOG 201 A 1 
HETATM 6 C C20 DOG . . . E 2 -11.717 -33.853 9.714 1 25.73 ? C20 DOG 201 A 1 
HETATM 7 C C17 DOG . . . E 2 -12.132 -35.214 10.006 1 24.29 ? C17 DOG 201 A 1 
HETATM 8 C C16 DOG . . . E 2 -12.558 -35.895 8.784 1 25.34 ? C16 DOG 201 A 1 
HETATM 9 C C13 DOG . . . E 2 -10.982 -36.077 10.605 1 24.33 ? C13 DOG 201 A 1 
HETATM 10 C C18 DOG . . . E 2 -9.822 -35.287 11.196 1 22.66 ? C18 DOG 201 A 1 
HETATM 11 C C12 DOG . . . E 2 -11.585 -37.011 11.705 1 27.42 ? C12 DOG 201 A 1 
HETATM 12 O O12 DOG . . . E 2 -11.898 -36.256 12.756 1 27.31 ? O12 DOG 201 A 1 
HETATM 13 C C14 DOG . . . E 2 -10.589 -36.924 9.415 1 24.48 ? C14 DOG 201 A 1 
HETATM 14 C C15 DOG . . . E 2 -11.893 -37.228 8.807 1 27.83 ? C15 DOG 201 A 1 
HETATM 15 O O14 DOG . . . E 2 -9.929 -36.199 8.566 1 23.1 ? O14 DOG 201 A 1 
HETATM 16 C C8 DOG . . . E 2 -9.696 -38.145 9.823 1 27.12 ? C8 DOG 201 A 1 
HETATM 17 C C7 DOG . . . E 2 -9.428 -39.014 8.631 1 26.68 ? C7 DOG 201 A 1 
HETATM 18 C C9 DOG . . . E 2 -10.271 -38.942 10.973 1 25.78 ? C9 DOG 201 A 1 
HETATM 19 C C11 DOG . . . E 2 -10.602 -38.05 12.128 1 24.88 ? C11 DOG 201 A 1 
HETATM 20 C C10 DOG . . . E 2 -9.333 -40.101 11.367 1 31.2 ? C10 DOG 201 A 1 
HETATM 21 C C19 DOG . . . E 2 -8.101 -39.598 11.909 1 30.51 ? C19 DOG 201 A 1 
HETATM 22 C C5 DOG . . . E 2 -8.994 -40.949 10.144 1 33.91 ? C5 DOG 201 A 1 
HETATM 23 C C6 DOG . . . E 2 -8.506 -40.095 8.964 1 30.85 ? C6 DOG 201 A 1 
HETATM 24 C C4 DOG . . . E 2 -10.161 -41.78 9.696 1 30.08 ? C4 DOG 201 A 1 
HETATM 25 C C3 DOG . . . E 2 -10.825 -42.56 10.819 1 39.41 ? C3 DOG 201 A 1 
HETATM 26 O O32 DOG . . . E 2 -9.982 -43.584 11.27 1 41.51 ? O32 DOG 201 A 1 
HETATM 27 C C2 DOG . . . E 2 -11.191 -41.609 11.893 1 29.52 ? C2 DOG 201 A 1 
HETATM 28 C C1 DOG . . . E 2 -9.993 -40.976 12.406 1 33.64 ? C1 DOG 201 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           28 
#