data_4J8T # _model_server_result.job_id jpM-7Z9_RJ4yIRfD_Gg3Ng _model_server_result.datetime_utc '2024-11-15 07:31:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j8t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 4J8T # _exptl.entry_id 4J8T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.513 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DIGOXIGENIN _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4J8T _cell.length_a 74.368 _cell.length_b 74.368 _cell.length_c 161.097 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J8T _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA tetrameric 4 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 D,H,L 5 2 C,G,K 5 3 A,B,E,F,I,J 5 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_445 -x-1,-y-1,z+1/2 -1 0 0 0 -1 0 0 0 1 -37.184 -64.404577 80.5485 3 'crystal symmetry operation' 5_545 y,-x+y-1,z+1/6 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 37.184 -64.404577 26.8495 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C23 H34 O5' _chem_comp.formula_weight 390.513 _chem_comp.id DOG _chem_comp.mon_nstd_flag . _chem_comp.name DIGOXIGENIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(3,12,14-TRIHYDROXY-10,13-DIMETHYL-HEXADECAHYDRO-CYCLOPENTA[A]PHENANTHREN-17-YL)-5H-FURAN-2-ONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C23 DOG doub 83 n n C23 C22 DOG sing 84 n n C23 O21 DOG sing 85 n n C22 C20 DOG doub 86 n n C22 H22 DOG sing 87 n n O21 C21 DOG sing 88 n n C21 C20 DOG sing 89 n n C21 H211 DOG sing 90 n n C21 H212 DOG sing 91 n n C20 C17 DOG sing 92 n n C17 C16 DOG sing 93 n n C17 C13 DOG sing 94 n n C17 H17 DOG sing 95 n n C16 C15 DOG sing 96 n n C16 H161 DOG sing 97 n n C16 H162 DOG sing 98 n n C13 C18 DOG sing 99 n n C13 C12 DOG sing 100 n n C13 C14 DOG sing 101 n n C18 H181 DOG sing 102 n n C18 H182 DOG sing 103 n n C18 H183 DOG sing 104 n n C12 O12 DOG sing 105 n n C12 C11 DOG sing 106 n n C12 H12 DOG sing 107 n n O12 H12O DOG sing 108 n n C14 C15 DOG sing 109 n n C14 O14 DOG sing 110 n n C14 C8 DOG sing 111 n n C15 H151 DOG sing 112 n n C15 H152 DOG sing 113 n n O14 H14O DOG sing 114 n n C8 C7 DOG sing 115 n n C8 C9 DOG sing 116 n n C8 HC8 DOG sing 117 n n C7 C6 DOG sing 118 n n C7 HC71 DOG sing 119 n n C7 HC72 DOG sing 120 n n C9 C11 DOG sing 121 n n C9 C10 DOG sing 122 n n C9 HC9 DOG sing 123 n n C11 H111 DOG sing 124 n n C11 H112 DOG sing 125 n n C10 C19 DOG sing 126 n n C10 C5 DOG sing 127 n n C10 C1 DOG sing 128 n n C19 H191 DOG sing 129 n n C19 H192 DOG sing 130 n n C19 H193 DOG sing 131 n n C5 C6 DOG sing 132 n n C5 C4 DOG sing 133 n n C5 HC5 DOG sing 134 n n C6 HC61 DOG sing 135 n n C6 HC62 DOG sing 136 n n C4 C3 DOG sing 137 n n C4 HC41 DOG sing 138 n n C4 HC42 DOG sing 139 n n C3 O32 DOG sing 140 n n C3 C2 DOG sing 141 n n C3 HC3 DOG sing 142 n n O32 H32O DOG sing 143 n n C2 C1 DOG sing 144 n n C2 HC21 DOG sing 145 n n C2 HC22 DOG sing 146 n n C1 HC11 DOG sing 147 n n C1 HC12 DOG sing 148 n n # _atom_sites.entry_id 4J8T _atom_sites.fract_transf_matrix[1][1] 0.013447 _atom_sites.fract_transf_matrix[1][2] 0.007763 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006207 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 DOG A 1 201 201 DOG DOG . F 2 DOG B 1 201 201 DOG DOG . G 2 DOG C 1 201 201 DOG DOG . H 2 DOG D 1 201 201 DOG DOG . I 3 HOH A 1 301 301 HOH HOH . I 3 HOH A 2 302 302 HOH HOH . I 3 HOH A 3 303 303 HOH HOH . I 3 HOH A 4 304 304 HOH HOH . I 3 HOH A 5 305 305 HOH HOH . I 3 HOH A 6 306 307 HOH HOH . I 3 HOH A 7 307 308 HOH HOH . I 3 HOH A 8 308 309 HOH HOH . I 3 HOH A 9 309 310 HOH HOH . I 3 HOH A 10 310 311 HOH HOH . I 3 HOH A 11 311 312 HOH HOH . I 3 HOH A 12 312 313 HOH HOH . I 3 HOH A 13 313 314 HOH HOH . I 3 HOH A 14 314 315 HOH HOH . I 3 HOH A 15 315 316 HOH HOH . I 3 HOH A 16 316 317 HOH HOH . I 3 HOH A 17 317 318 HOH HOH . I 3 HOH A 18 318 319 HOH HOH . I 3 HOH A 19 319 320 HOH HOH . I 3 HOH A 20 320 321 HOH HOH . I 3 HOH A 21 321 311 HOH HOH . I 3 HOH A 22 322 317 HOH HOH . J 3 HOH B 1 301 301 HOH HOH . J 3 HOH B 2 302 302 HOH HOH . J 3 HOH B 3 303 303 HOH HOH . J 3 HOH B 4 304 304 HOH HOH . J 3 HOH B 5 305 305 HOH HOH . J 3 HOH B 6 306 306 HOH HOH . J 3 HOH B 7 307 307 HOH HOH . J 3 HOH B 8 308 308 HOH HOH . J 3 HOH B 9 309 309 HOH HOH . J 3 HOH B 10 310 310 HOH HOH . J 3 HOH B 11 311 312 HOH HOH . J 3 HOH B 12 312 313 HOH HOH . J 3 HOH B 13 313 314 HOH HOH . J 3 HOH B 14 314 315 HOH HOH . J 3 HOH B 15 315 316 HOH HOH . J 3 HOH B 16 316 317 HOH HOH . J 3 HOH B 17 317 318 HOH HOH . J 3 HOH B 18 318 319 HOH HOH . J 3 HOH B 19 319 320 HOH HOH . J 3 HOH B 20 320 321 HOH HOH . J 3 HOH B 21 321 322 HOH HOH . J 3 HOH B 22 322 323 HOH HOH . K 3 HOH C 1 301 306 HOH HOH . K 3 HOH C 2 302 301 HOH HOH . K 3 HOH C 3 303 302 HOH HOH . K 3 HOH C 4 304 303 HOH HOH . K 3 HOH C 5 305 304 HOH HOH . K 3 HOH C 6 306 305 HOH HOH . K 3 HOH C 7 307 306 HOH HOH . K 3 HOH C 8 308 307 HOH HOH . K 3 HOH C 9 309 308 HOH HOH . K 3 HOH C 10 310 309 HOH HOH . K 3 HOH C 11 311 310 HOH HOH . K 3 HOH C 12 312 311 HOH HOH . K 3 HOH C 13 313 312 HOH HOH . K 3 HOH C 14 314 313 HOH HOH . K 3 HOH C 15 315 314 HOH HOH . K 3 HOH C 16 316 315 HOH HOH . K 3 HOH C 17 317 316 HOH HOH . K 3 HOH C 18 318 317 HOH HOH . K 3 HOH C 19 319 318 HOH HOH . K 3 HOH C 20 320 319 HOH HOH . K 3 HOH C 21 321 320 HOH HOH . K 3 HOH C 22 322 321 HOH HOH . K 3 HOH C 23 323 322 HOH HOH . K 3 HOH C 24 324 323 HOH HOH . L 3 HOH D 1 301 301 HOH HOH . L 3 HOH D 2 302 302 HOH HOH . L 3 HOH D 3 303 303 HOH HOH . L 3 HOH D 4 304 304 HOH HOH . L 3 HOH D 5 305 305 HOH HOH . L 3 HOH D 6 306 306 HOH HOH . L 3 HOH D 7 307 307 HOH HOH . L 3 HOH D 8 308 308 HOH HOH . L 3 HOH D 9 309 309 HOH HOH . L 3 HOH D 10 310 310 HOH HOH . L 3 HOH D 11 311 311 HOH HOH . L 3 HOH D 12 312 312 HOH HOH . L 3 HOH D 13 313 313 HOH HOH . L 3 HOH D 14 314 314 HOH HOH . L 3 HOH D 15 315 315 HOH HOH . L 3 HOH D 16 316 316 HOH HOH . L 3 HOH D 17 317 318 HOH HOH . L 3 HOH D 18 318 319 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 DOG . . . G 2 -37.457 -39.883 16.266 1 27.59 ? O23 DOG 201 C 1 HETATM 2 C C23 DOG . . . G 2 -37.566 -38.902 15.556 1 25.96 ? C23 DOG 201 C 1 HETATM 3 C C22 DOG . . . G 2 -37.008 -37.549 15.67 1 21.29 ? C22 DOG 201 C 1 HETATM 4 O O21 DOG . . . G 2 -38.39 -38.984 14.461 1 25.56 ? O21 DOG 201 C 1 HETATM 5 C C21 DOG . . . G 2 -38.262 -37.75 13.734 1 26.05 ? C21 DOG 201 C 1 HETATM 6 C C20 DOG . . . G 2 -37.45 -36.837 14.631 1 24.27 ? C20 DOG 201 C 1 HETATM 7 C C17 DOG . . . G 2 -37.04 -35.432 14.341 1 25.74 ? C17 DOG 201 C 1 HETATM 8 C C16 DOG . . . G 2 -36.443 -35.307 12.907 1 27.55 ? C16 DOG 201 C 1 HETATM 9 C C13 DOG . . . G 2 -38.207 -34.376 14.431 1 25.78 ? C13 DOG 201 C 1 HETATM 10 C C18 DOG . . . G 2 -39.407 -34.802 15.282 1 23.09 ? C18 DOG 201 C 1 HETATM 11 C C12 DOG . . . G 2 -37.542 -33.074 14.988 1 27.76 ? C12 DOG 201 C 1 HETATM 12 O O12 DOG . . . G 2 -37.234 -33.3 16.334 1 29.35 ? O12 DOG 201 C 1 HETATM 13 C C14 DOG . . . G 2 -38.571 -34.158 12.951 1 25.99 ? C14 DOG 201 C 1 HETATM 14 C C15 DOG . . . G 2 -37.184 -34.155 12.228 1 28.22 ? C15 DOG 201 C 1 HETATM 15 O O14 DOG . . . G 2 -39.327 -35.257 12.543 1 27.6 ? O14 DOG 201 C 1 HETATM 16 C C8 DOG . . . G 2 -39.422 -32.946 12.674 1 30.06 ? C8 DOG 201 C 1 HETATM 17 C C7 DOG . . . G 2 -39.366 -32.629 11.174 1 33.65 ? C7 DOG 201 C 1 HETATM 18 C C9 DOG . . . G 2 -39.02 -31.651 13.5 1 29.37 ? C9 DOG 201 C 1 HETATM 19 C C11 DOG . . . G 2 -38.439 -31.884 14.939 1 29.83 ? C11 DOG 201 C 1 HETATM 20 C C10 DOG . . . G 2 -39.559 -30.264 13.063 1 33.4 ? C10 DOG 201 C 1 HETATM 21 C C19 DOG . . . G 2 -40.95 -30.17 13.697 1 33.72 ? C19 DOG 201 C 1 HETATM 22 C C5 DOG . . . G 2 -39.716 -30.136 11.513 1 32.42 ? C5 DOG 201 C 1 HETATM 23 C C6 DOG . . . G 2 -40.289 -31.449 10.913 1 32.47 ? C6 DOG 201 C 1 HETATM 24 C C4 DOG . . . G 2 -38.396 -29.817 10.795 1 37.56 ? C4 DOG 201 C 1 HETATM 25 C C3 DOG . . . G 2 -37.674 -28.636 11.405 1 44.13 ? C3 DOG 201 C 1 HETATM 26 O O32 DOG . . . G 2 -38.52 -27.521 11.316 1 48.58 ? O32 DOG 201 C 1 HETATM 27 C C2 DOG . . . G 2 -37.358 -28.982 12.851 1 39.82 ? C2 DOG 201 C 1 HETATM 28 C C1 DOG . . . G 2 -38.653 -29.138 13.628 1 36.81 ? C1 DOG 201 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 28 #