data_4J90 # _model_server_result.job_id 7hcEfea_bRwfTrOeiuJqrA _model_server_result.datetime_utc '2024-10-13 22:22:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4J90 # _exptl.entry_id 4J90 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J90 _cell.length_a 122.838 _cell.length_b 122.838 _cell.length_c 84.123 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4J90 _atom_sites.fract_transf_matrix[1][1] 0.008141 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 601 601 ATP ATP . D 2 ATP B 1 301 602 ATP ATP . E 3 HOH A 1 701 1 HOH HOH . E 3 HOH A 2 702 2 HOH HOH . E 3 HOH A 3 703 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 2 21.739 -10.577 -3.874 1 97.52 ? PG ATP 301 B 1 HETATM 2 O O1G ATP . . . D 2 22.512 -9.972 -2.727 1 92.69 ? O1G ATP 301 B 1 HETATM 3 O O2G ATP . . . D 2 20.99 -11.834 -3.526 1 89.84 ? O2G ATP 301 B 1 HETATM 4 O O3G ATP . . . D 2 22.484 -10.658 -5.182 1 100.66 ? O3G ATP 301 B 1 HETATM 5 P PB ATP . . . D 2 20.858 -8.086 -4.827 1 100.43 ? PB ATP 301 B 1 HETATM 6 O O1B ATP . . . D 2 21.951 -7.445 -4.011 1 106.97 ? O1B ATP 301 B 1 HETATM 7 O O2B ATP . . . D 2 21.054 -8.229 -6.315 1 99.19 ? O2B ATP 301 B 1 HETATM 8 O O3B ATP . . . D 2 20.562 -9.534 -4.194 1 97.86 ? O3B ATP 301 B 1 HETATM 9 P PA ATP . . . D 2 19.005 -6.414 -3.321 1 106.31 ? PA ATP 301 B 1 HETATM 10 O O1A ATP . . . D 2 17.53 -6.648 -3.117 1 103.94 ? O1A ATP 301 B 1 HETATM 11 O O2A ATP . . . D 2 19.52 -5.01 -3.553 1 100.77 ? O2A ATP 301 B 1 HETATM 12 O O3A ATP . . . D 2 19.446 -7.333 -4.584 1 103.31 ? O3A ATP 301 B 1 HETATM 13 O O5' ATP . . . D 2 19.71 -6.992 -1.994 1 102.95 ? O5' ATP 301 B 1 HETATM 14 C C5' ATP . . . D 2 20.097 -6.076 -0.973 1 98.17 ? C5' ATP 301 B 1 HETATM 15 C C4' ATP . . . D 2 19.49 -6.388 0.393 1 99.24 ? C4' ATP 301 B 1 HETATM 16 O O4' ATP . . . D 2 19.732 -5.251 1.216 1 103.64 ? O4' ATP 301 B 1 HETATM 17 C C3' ATP . . . D 2 17.983 -6.59 0.411 1 101.02 ? C3' ATP 301 B 1 HETATM 18 O O3' ATP . . . D 2 17.655 -7.547 1.424 1 102.23 ? O3' ATP 301 B 1 HETATM 19 C C2' ATP . . . D 2 17.399 -5.26 0.825 1 99.44 ? C2' ATP 301 B 1 HETATM 20 O O2' ATP . . . D 2 16.245 -5.419 1.653 1 102.18 ? O2' ATP 301 B 1 HETATM 21 C C1' ATP . . . D 2 18.513 -4.635 1.635 1 100.42 ? C1' ATP 301 B 1 HETATM 22 N N9 ATP . . . D 2 18.521 -3.157 1.48 1 100.73 ? N9 ATP 301 B 1 HETATM 23 C C8 ATP . . . D 2 18.185 -2.453 0.382 1 97.56 ? C8 ATP 301 B 1 HETATM 24 N N7 ATP . . . D 2 18.299 -1.121 0.614 1 98.48 ? N7 ATP 301 B 1 HETATM 25 C C5 ATP . . . D 2 18.711 -0.96 1.883 1 92.25 ? C5 ATP 301 B 1 HETATM 26 C C6 ATP . . . D 2 19.028 0.178 2.768 1 89.71 ? C6 ATP 301 B 1 HETATM 27 N N6 ATP . . . D 2 18.923 1.45 2.326 1 100.23 ? N6 ATP 301 B 1 HETATM 28 N N1 ATP . . . D 2 19.431 -0.087 4.026 1 88.17 ? N1 ATP 301 B 1 HETATM 29 C C2 ATP . . . D 2 19.545 -1.346 4.486 1 91.84 ? C2 ATP 301 B 1 HETATM 30 N N3 ATP . . . D 2 19.268 -2.429 3.743 1 93.28 ? N3 ATP 301 B 1 HETATM 31 C C4 ATP . . . D 2 18.856 -2.303 2.454 1 95.98 ? C4 ATP 301 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #